Wall clock time and date at job start Wed Apr 1 2020 05:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34258 * 126.52226 * 2 1 4 4 C 1.34045 * 108.22335 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.37641 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49955 * 8.72081 * 5 4 3 7 7 C 1.53000 * 117.49679 * 300.06470 * 5 4 3 8 8 N 1.29939 * 109.24628 * 359.75007 * 4 3 2 9 9 C 1.36068 * 108.47559 * 0.40455 * 8 4 3 10 10 C 1.47416 * 126.44712 * 179.86289 * 9 8 4 11 11 O 1.21609 * 119.99532 * 179.69324 * 10 9 8 12 12 N 1.34773 * 120.00260 * 359.68189 * 10 9 8 13 13 C 1.46501 * 120.00256 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.46951 * 325.01200 * 13 12 10 15 15 C 1.53004 * 109.46718 * 85.00459 * 13 12 10 16 16 C 1.52993 * 109.47213 * 205.00527 * 13 12 10 17 17 H 1.08999 * 109.50168 * 299.93443 * 16 13 12 18 18 C 1.53051 * 109.52109 * 179.85583 * 16 13 12 19 19 C 1.53040 * 109.53536 * 178.66961 * 18 16 13 20 20 C 1.52759 * 109.38545 * 61.23641 * 19 18 16 21 21 N 1.46923 * 109.01237 * 305.59084 * 20 19 18 22 22 C 1.36935 * 120.62889 * 233.58434 * 21 20 19 23 23 H 1.07998 * 119.99964 * 152.10883 * 22 21 20 24 24 C 1.38806 * 119.99901 * 332.09815 * 22 21 20 25 25 N 1.31623 * 120.00510 * 335.27507 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 154.99824 * 24 22 21 27 27 H 1.48499 * 109.47244 * 89.99976 * 26 24 22 28 28 H 1.48497 * 109.47129 * 210.00254 * 26 24 22 29 29 H 1.48505 * 109.46806 * 330.00107 * 26 24 22 30 30 C 1.46923 * 118.73676 * 53.30433 * 21 20 19 31 31 H 1.09004 * 109.46743 * 269.95229 * 1 2 3 32 32 H 1.08997 * 109.47328 * 29.95150 * 1 2 3 33 33 H 1.08999 * 109.47076 * 149.95305 * 1 2 3 34 34 H 1.09003 * 115.54929 * 154.39817 * 5 4 3 35 35 H 1.09001 * 117.49993 * 0.02562 * 6 5 4 36 36 H 1.09004 * 117.50142 * 145.01822 * 6 5 4 37 37 H 1.09011 * 117.49466 * 214.98210 * 7 5 4 38 38 H 1.08994 * 117.50273 * 359.96893 * 7 5 4 39 39 H 0.96998 * 119.99849 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.46657 * 60.00116 * 15 13 12 41 41 H 1.08992 * 109.46989 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.46941 * 300.00436 * 15 13 12 43 43 H 1.08990 * 109.45897 * 298.68739 * 18 16 13 44 44 H 1.09000 * 109.45851 * 58.64847 * 18 16 13 45 45 H 1.08998 * 109.49326 * 181.31985 * 19 18 16 46 46 H 1.09008 * 109.49676 * 301.38061 * 19 18 16 47 47 H 1.09000 * 109.50763 * 185.70096 * 20 19 18 48 48 H 1.09006 * 109.42391 * 65.42647 * 20 19 18 49 49 H 0.97000 * 119.99468 * 353.97254 * 25 24 22 50 50 H 1.09006 * 109.58528 * 66.43357 * 30 21 20 51 51 H 1.09001 * 109.58720 * 186.85647 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6581 -0.0006 5 6 4.7929 1.5508 -0.0002 6 6 4.5675 3.0498 0.2066 7 6 4.9590 2.5178 -1.1742 8 7 3.6002 -0.6411 0.0044 9 6 2.3170 -1.0936 -0.0007 10 6 1.8854 -2.5032 -0.0006 11 8 0.7004 -2.7762 0.0001 12 7 2.8041 -3.4893 -0.0014 13 6 2.3752 -4.8901 -0.0007 14 1 1.4645 -4.9909 0.5896 15 6 2.1042 -5.3412 -1.4374 16 6 3.4765 -5.7604 0.6080 17 1 4.3872 -5.6608 0.0173 18 6 3.0281 -7.2237 0.6126 19 6 4.1427 -8.0986 1.1909 20 6 4.4248 -7.6744 2.6310 21 7 4.7126 -6.2339 2.6580 22 6 5.8606 -5.7626 3.2368 23 1 6.2987 -4.8375 2.8922 24 6 6.4610 -6.4736 4.2667 25 7 5.7423 -7.2866 5.0116 26 14 8.2908 -6.2824 4.5908 27 1 8.5093 -5.1781 5.5593 28 1 8.8288 -7.5473 5.1525 29 1 8.9888 -5.9697 3.3178 30 6 3.7483 -5.3093 2.0465 31 1 -0.3633 -0.0009 1.0277 32 1 -0.3634 0.8904 -0.5131 33 1 -0.3633 -0.8896 -0.5146 34 1 5.6971 1.1144 0.4242 35 1 3.5411 3.3904 0.3429 36 1 5.3235 3.5999 0.7670 37 1 5.9726 2.7180 -1.5218 38 1 4.1905 2.5080 -1.9470 39 1 3.7493 -3.2715 -0.0017 40 1 3.0150 -5.2403 -2.0277 41 1 1.7856 -6.3835 -1.4369 42 1 1.3197 -4.7211 -1.8710 43 1 2.1316 -7.3268 1.2237 44 1 2.8104 -7.5400 -0.4075 45 1 3.8318 -9.1432 1.1722 46 1 5.0469 -7.9774 0.5943 47 1 5.2845 -8.2261 3.0112 48 1 3.5512 -7.8842 3.2484 49 1 4.7796 -7.3238 4.8989 50 1 2.8185 -5.3222 2.6154 51 1 4.1618 -4.3008 2.0413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025582672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:34 Heat of formation + Delta-G solvation = -4.350948 kcal Electronic energy + Delta-G solvation = -31179.399709 eV Core-core repulsion = 27080.364258 eV Total energy + Delta-G solvation = -4099.035451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.62080 -41.06914 -39.59474 -38.19187 -36.98035 -36.05392 -34.85749 -33.33373 -32.54448 -32.25182 -29.96759 -28.67140 -27.09164 -25.85035 -24.72285 -23.90637 -23.74700 -23.33748 -22.55984 -21.62784 -21.35594 -20.60257 -19.40988 -18.86990 -18.14604 -17.52759 -17.23420 -16.54786 -16.34275 -16.15668 -15.90571 -15.58466 -15.46278 -15.36494 -15.14928 -14.92557 -14.67432 -14.28097 -14.10792 -14.02828 -13.81442 -13.58617 -13.50837 -13.29926 -12.94806 -12.73677 -12.68970 -12.60342 -12.47658 -12.36527 -11.97982 -11.93329 -11.88203 -11.77825 -11.74889 -11.65796 -11.58742 -11.46064 -11.19114 -11.07448 -10.49376 -10.22672 -9.76127 -8.95636 -8.26936 -5.42522 -0.08954 0.78772 1.28273 1.55994 1.64442 1.82263 1.97833 2.11679 2.60178 2.63421 2.86436 3.18414 3.40170 3.47167 3.55340 3.70990 3.77700 3.89460 3.92151 3.94194 4.05062 4.11556 4.20800 4.31769 4.36964 4.39381 4.48384 4.51031 4.60884 4.71547 4.71843 4.74411 4.75189 4.81561 4.86020 4.91130 4.96371 4.97945 5.01761 5.05438 5.10499 5.15172 5.16612 5.19480 5.24654 5.36589 5.43666 5.54083 5.80298 6.21410 6.36604 6.49544 6.99716 7.03619 7.76045 8.20035 8.97126 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009412 B = 0.003085 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.352124 B = 9073.222436 C =11236.999086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.044 3.956 3 O -0.194 6.194 4 C 0.228 3.772 5 C -0.100 4.100 6 C -0.148 4.148 7 C -0.143 4.143 8 N -0.482 5.482 9 C -0.105 4.105 10 C 0.602 3.398 11 O -0.558 6.558 12 N -0.701 5.701 13 C 0.154 3.846 14 H 0.074 0.926 15 C -0.152 4.152 16 C -0.094 4.094 17 H 0.072 0.928 18 C -0.096 4.096 19 C -0.126 4.126 20 C 0.152 3.848 21 N -0.616 5.616 22 C -0.356 4.356 23 H 0.047 0.953 24 C -0.075 4.075 25 N -0.942 5.942 26 Si 1.116 2.884 27 H -0.284 1.284 28 H -0.287 1.287 29 H -0.275 1.275 30 C 0.159 3.841 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.096 0.904 39 H 0.409 0.591 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.044 0.956 48 H -0.001 1.001 49 H 0.253 0.747 50 H -0.001 1.001 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 18.056 -16.575 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.013 4.013 3 O -0.081 6.081 4 C 0.019 3.981 5 C -0.119 4.119 6 C -0.185 4.185 7 C -0.181 4.181 8 N -0.211 5.211 9 C -0.224 4.224 10 C 0.388 3.612 11 O -0.438 6.438 12 N -0.350 5.350 13 C 0.050 3.950 14 H 0.092 0.908 15 C -0.210 4.210 16 C -0.114 4.114 17 H 0.090 0.910 18 C -0.134 4.134 19 C -0.165 4.165 20 C 0.026 3.974 21 N -0.340 5.340 22 C -0.486 4.486 23 H 0.065 0.935 24 C -0.271 4.271 25 N -0.584 5.584 26 Si 0.940 3.060 27 H -0.211 1.211 28 H -0.213 1.213 29 H -0.200 1.200 30 C 0.033 3.967 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.170 0.830 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.244 0.756 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.017 0.983 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.846 16.915 -15.644 23.770 hybrid contribution -1.403 0.804 -0.195 1.629 sum -7.250 17.718 -15.839 24.847 Atomic orbital electron populations 1.20703 0.80311 1.06197 1.05560 1.24241 0.96190 0.82782 0.98108 1.84292 1.17887 1.35973 1.69964 1.25711 0.83875 0.89467 0.99057 1.20553 0.91092 0.90390 1.09839 1.23252 1.04629 0.90960 0.99672 1.23269 1.05212 0.98335 0.91255 1.70679 1.21716 1.10048 1.18607 1.21543 0.89558 0.95718 1.15622 1.16829 0.85351 0.83079 0.75912 1.90728 1.16702 1.83701 1.52628 1.45925 1.10187 1.05997 1.72880 1.21015 0.97211 0.78728 0.98050 0.90782 1.22130 1.02048 1.02601 0.94177 1.21730 0.97634 0.95966 0.96107 0.90984 1.21451 0.97449 0.92547 1.01944 1.21856 0.98894 0.99477 0.96247 1.20792 0.97032 0.84535 0.95016 1.44339 1.21404 1.01433 1.66871 1.20220 1.02492 1.10841 1.15023 0.93488 1.27225 1.09828 0.98195 0.91882 1.70873 1.07220 1.42566 1.37722 0.82869 0.70790 0.76168 0.76164 1.21054 1.21329 1.19995 1.20903 0.90787 0.92723 0.92238 0.88045 0.87290 0.87885 0.83021 0.88110 0.84964 0.84879 0.88504 0.75593 0.91737 0.89338 0.92788 0.92542 0.88796 0.90332 0.92645 0.93769 0.98284 0.93750 0.98319 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.88 71.24 0.70 -0.57 16 2 C 0.04 1.09 7.44 25.19 0.19 1.28 16 3 O -0.19 -4.52 10.40 0.41 0.00 -4.52 16 4 C 0.23 5.54 7.80 88.39 0.69 6.23 16 5 C -0.10 -1.61 6.33 -11.54 -0.07 -1.69 16 6 C -0.15 -1.51 10.16 30.61 0.31 -1.20 16 7 C -0.14 -1.47 10.24 30.62 0.31 -1.16 16 8 N -0.48 -14.44 11.06 -293.04 -3.24 -17.68 16 9 C -0.11 -3.20 6.99 40.41 0.28 -2.91 16 10 C 0.60 19.53 7.78 86.66 0.67 20.21 16 11 O -0.56 -19.20 14.47 -4.06 -0.06 -19.26 16 12 N -0.70 -21.90 4.47 -445.82 -1.99 -23.89 16 13 C 0.15 4.59 2.16 44.99 0.10 4.69 16 14 H 0.07 2.43 7.58 -2.39 -0.02 2.42 16 15 C -0.15 -3.60 9.14 71.98 0.66 -2.94 16 16 C -0.09 -3.17 1.97 -10.72 -0.02 -3.19 16 17 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 18 C -0.10 -2.96 4.86 30.62 0.15 -2.81 16 19 C -0.13 -4.58 6.06 30.53 0.19 -4.39 16 20 C 0.15 7.37 4.66 86.22 0.40 7.78 16 21 N -0.62 -32.21 2.86 -699.94 -2.00 -34.21 16 22 C -0.36 -20.70 9.49 84.03 0.80 -19.91 16 23 H 0.05 2.75 7.94 -2.91 -0.02 2.73 16 24 C -0.08 -4.40 4.69 84.86 0.40 -4.00 16 25 N -0.94 -58.99 12.40 21.65 0.27 -58.72 16 26 Si 1.12 52.11 29.99 68.60 2.06 54.16 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 30 C 0.16 7.06 5.56 86.36 0.48 7.54 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 2.10 6.48 -2.39 -0.02 2.09 16 34 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.10 1.11 7.94 -2.39 -0.02 1.09 16 36 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.41 12.96 8.14 -92.71 -0.75 12.20 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.78 6.40 -2.39 -0.02 1.77 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 2.24 6.37 -2.39 -0.02 2.22 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.04 2.43 6.30 -2.39 -0.02 2.41 16 48 H 0.00 -0.04 7.87 -2.38 -0.02 -0.06 16 49 H 0.25 16.24 6.71 -92.71 -0.62 15.62 16 50 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 51 H 0.04 1.85 7.43 -2.39 -0.02 1.83 16 Total: -1.00 -75.17 407.18 1.60 -73.56 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.33 Total: 27.62 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.23 Total: 2.94 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -6.96 Total: -134.51 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.16 kcal Total: -75.17 1.60 -73.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025582672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.213 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds