Wall clock time and date at job start Wed Apr 1 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34262 * 126.52561 * 2 1 4 4 C 1.34051 * 108.22344 * 180.26831 * 3 2 1 5 5 C 1.50700 * 125.37927 * 179.76894 * 4 3 2 6 6 C 1.53006 * 109.46925 * 299.96338 * 5 4 3 7 7 C 1.52997 * 109.46923 * 59.95835 * 5 4 3 8 8 N 1.29934 * 109.24667 * 359.73652 * 4 3 2 9 9 C 1.36065 * 108.47616 * 359.97438 * 8 4 3 10 10 C 1.47423 * 126.45036 * 180.02562 * 9 8 4 11 11 O 1.21614 * 119.99762 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99666 * 0.02562 * 10 9 8 13 13 C 1.49210 * 126.06104 * 0.04938 * 12 10 9 14 14 C 1.50329 * 104.32910 * 172.12204 * 13 12 10 15 15 H 1.08998 * 110.85432 * 279.87271 * 14 13 12 16 16 C 1.51003 * 124.69414 * 145.19210 * 14 13 12 17 17 C 1.56685 * 101.58389 * 204.25561 * 16 14 13 18 18 C 1.55943 * 105.65259 * 25.14204 * 17 16 14 19 19 H 1.09003 * 110.49565 * 248.68734 * 18 17 16 20 20 N 1.46498 * 110.49637 * 126.15328 * 18 17 16 21 21 C 1.36943 * 119.99752 * 87.98606 * 20 18 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 18 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 18 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47213 * 60.00246 * 25 23 21 27 27 H 1.48502 * 109.47317 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47081 * 299.99875 * 25 23 21 29 29 C 1.50294 * 104.27297 * 7.41913 * 18 17 16 30 30 H 1.09000 * 109.99397 * 80.54555 * 29 18 17 31 31 C 1.49704 * 126.05647 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46791 * 270.18540 * 1 2 3 33 33 H 1.09001 * 109.47153 * 30.17923 * 1 2 3 34 34 H 1.08993 * 109.47644 * 150.18216 * 1 2 3 35 35 H 1.08999 * 109.47630 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.47374 * 60.00196 * 6 5 4 37 37 H 1.09005 * 109.46502 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47275 * 299.99328 * 6 5 4 39 39 H 1.09002 * 109.47682 * 300.00290 * 7 5 4 40 40 H 1.09006 * 109.47222 * 60.00566 * 7 5 4 41 41 H 1.08999 * 109.47269 * 180.02562 * 7 5 4 42 42 H 1.09000 * 110.35991 * 291.73714 * 13 12 10 43 43 H 1.08996 * 110.36577 * 53.94248 * 13 12 10 44 44 H 1.08990 * 111.00387 * 322.41965 * 16 14 13 45 45 H 1.09005 * 111.00203 * 86.26631 * 16 14 13 46 46 H 1.09002 * 110.30197 * 266.08387 * 17 16 14 47 47 H 1.09000 * 110.20971 * 144.15853 * 17 16 14 48 48 H 0.97001 * 120.00384 * 268.26962 * 20 18 17 49 49 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 50 50 H 1.08997 * 110.84268 * 36.70743 * 31 12 10 51 51 H 1.08998 * 111.01598 * 273.18128 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 -0.0060 5 6 4.7929 1.5505 -0.0130 6 6 4.7708 2.4318 -1.2636 7 6 4.7824 2.4357 1.2349 8 7 3.6002 -0.6412 -0.0040 9 6 2.3170 -1.0936 0.0040 10 6 1.8852 -2.5032 0.0092 11 8 0.7001 -2.7761 0.0158 12 7 2.8039 -3.4893 0.0066 13 6 4.2852 -3.3097 -0.0003 14 6 4.8291 -4.6969 0.1991 15 1 4.7945 -4.9797 1.2512 16 6 6.0989 -5.2206 -0.4282 17 6 5.8353 -6.7651 -0.4296 18 6 4.2843 -6.9273 -0.4316 19 1 3.9422 -7.3367 0.5189 20 7 3.8597 -7.7850 -1.5407 21 6 3.7996 -9.1427 -1.3721 22 1 4.0610 -9.5807 -0.4201 23 6 3.4028 -9.9560 -2.4247 24 7 3.0848 -9.4221 -3.5850 25 14 3.3202 -11.8078 -2.1945 26 1 2.3578 -12.1294 -1.1102 27 1 2.8725 -12.4444 -3.4592 28 1 4.6652 -12.3220 -1.8312 29 6 3.7659 -5.5292 -0.6193 30 1 3.8100 -5.2537 -1.6730 31 6 2.5191 -4.9590 0.0107 32 1 -0.3633 0.0033 1.0277 33 1 -0.3633 0.8884 -0.5166 34 1 -0.3634 -0.8915 -0.5110 35 1 5.6944 0.9378 -0.0164 36 1 3.8695 3.0446 -1.2604 37 1 5.6489 3.0777 -1.2684 38 1 4.7784 1.8012 -2.1526 39 1 3.8810 3.0486 1.2381 40 1 4.7982 1.8079 2.1258 41 1 5.6604 3.0816 1.2296 42 1 4.6119 -2.8898 -0.9516 43 1 4.5930 -2.6657 0.8234 44 1 6.2179 -4.8423 -1.4434 45 1 6.9671 -4.9743 0.1832 46 1 6.2601 -7.2221 0.4643 47 1 6.2622 -7.2192 -1.3239 48 1 3.6250 -7.3917 -2.3957 49 1 2.8071 -9.9904 -4.3205 50 1 1.6407 -5.1854 -0.5936 51 1 2.3941 -5.3301 1.0278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026267163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:43 Heat of formation + Delta-G solvation = -13.732109 kcal Electronic energy + Delta-G solvation = -31097.952025 eV Core-core repulsion = 26998.509776 eV Total energy + Delta-G solvation = -4099.442249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.57248 -41.69966 -39.84075 -36.91334 -36.67585 -35.86265 -35.05384 -32.99871 -32.67883 -31.07787 -29.87689 -28.23179 -28.09385 -27.02879 -25.38111 -24.88626 -23.96511 -23.30922 -21.90066 -21.45375 -20.48469 -20.15802 -19.12945 -18.39753 -18.07949 -17.63719 -17.11782 -16.57664 -16.40650 -16.14906 -15.97960 -15.58617 -15.37497 -15.20463 -14.94960 -14.56384 -14.44304 -14.33519 -14.06039 -13.80431 -13.64134 -13.49373 -13.20866 -13.13928 -13.04270 -13.01945 -12.61696 -12.56257 -12.51502 -12.44290 -12.24511 -12.16670 -12.13191 -11.97261 -11.86675 -11.79808 -11.62981 -11.38868 -11.17178 -10.97056 -10.87792 -10.04834 -9.67607 -8.98643 -7.92527 -5.20913 -0.04611 0.90817 1.35855 1.47343 1.50384 1.56159 1.70379 2.11764 2.57290 2.67936 2.94944 3.41299 3.43466 3.53928 3.68442 3.88469 3.91585 4.05021 4.06603 4.14225 4.21525 4.23551 4.25789 4.37721 4.43026 4.51540 4.52131 4.57257 4.66427 4.71323 4.75926 4.76924 4.77819 4.86206 4.91494 4.92094 4.93683 4.96885 5.04320 5.05962 5.12037 5.20349 5.21567 5.31399 5.32819 5.35624 5.48965 5.51163 5.63828 6.27491 6.29369 6.43560 6.90737 7.34892 8.11318 8.33884 9.30972 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002350 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.622301 B =11909.981522 C =12830.716644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.044 3.956 3 O -0.192 6.192 4 C 0.204 3.796 5 C 0.003 3.997 6 C -0.147 4.147 7 C -0.146 4.146 8 N -0.471 5.471 9 C -0.099 4.099 10 C 0.607 3.393 11 O -0.569 6.569 12 N -0.611 5.611 13 C 0.147 3.853 14 C -0.109 4.109 15 H 0.095 0.905 16 C -0.084 4.084 17 C -0.136 4.136 18 C 0.189 3.811 19 H 0.053 0.947 20 N -0.734 5.734 21 C -0.235 4.235 22 H 0.078 0.922 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.279 1.279 27 H -0.299 1.299 28 H -0.276 1.276 29 C -0.119 4.119 30 H 0.062 0.938 31 C 0.134 3.866 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.057 0.943 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 29.089 11.058 31.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.013 4.013 3 O -0.079 6.079 4 C -0.006 4.006 5 C -0.016 4.016 6 C -0.205 4.205 7 C -0.203 4.203 8 N -0.199 5.199 9 C -0.218 4.218 10 C 0.396 3.604 11 O -0.450 6.450 12 N -0.343 5.343 13 C 0.026 3.974 14 C -0.129 4.129 15 H 0.113 0.887 16 C -0.122 4.122 17 C -0.176 4.176 18 C 0.080 3.920 19 H 0.071 0.929 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.202 1.202 29 C -0.139 4.139 30 H 0.080 0.920 31 C 0.012 3.988 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.374 28.452 11.153 31.029 hybrid contribution -1.123 -1.065 -0.772 1.729 sum 4.252 27.387 10.381 29.595 Atomic orbital electron populations 1.20660 0.80963 1.05759 1.05596 1.24112 0.96046 0.82990 0.98200 1.84321 1.18208 1.35655 1.69711 1.27125 0.84690 0.90144 0.98634 1.20078 0.88271 0.94259 0.99008 1.21902 1.04275 0.99362 0.94960 1.21892 1.04244 0.99295 0.94907 1.70825 1.20927 1.09756 1.18406 1.21247 0.90118 0.94629 1.15776 1.16664 0.84368 0.82988 0.76356 1.90756 1.16928 1.83686 1.53587 1.49659 1.07957 1.05687 1.71044 1.21268 0.76980 0.96223 1.02937 1.22242 0.96164 0.93621 1.00844 0.88684 1.21719 0.96075 0.93763 1.00686 1.23650 0.96712 0.95925 1.01350 1.20352 0.93027 0.87604 0.91025 0.92861 1.42703 1.80055 1.03055 1.11540 1.19608 1.35902 0.84273 0.96946 0.90408 1.25558 1.03284 1.02330 0.95928 1.69825 1.53975 1.35432 1.03106 0.85238 0.78033 0.80471 0.76199 1.20526 1.22526 1.20204 1.22254 0.95251 0.96870 0.99501 0.91999 1.21402 0.97693 0.78562 1.01093 0.87682 0.87472 0.88776 0.85778 0.92037 0.88281 0.92955 0.92068 0.92605 0.88329 0.91222 0.89174 0.91824 0.88826 0.91051 0.93428 0.79804 0.94211 0.92469 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 9.87 71.23 0.70 -0.62 16 2 C 0.04 1.03 7.44 25.18 0.19 1.21 16 3 O -0.19 -3.95 10.73 0.33 0.00 -3.94 16 4 C 0.20 3.97 6.81 88.39 0.60 4.57 16 5 C 0.00 0.03 3.39 -11.54 -0.04 -0.01 16 6 C -0.15 -1.23 9.18 71.98 0.66 -0.57 16 7 C -0.15 -1.09 9.17 71.98 0.66 -0.43 16 8 N -0.47 -11.68 8.92 -293.03 -2.61 -14.30 16 9 C -0.10 -2.81 6.84 40.41 0.28 -2.53 16 10 C 0.61 20.34 7.87 86.66 0.68 21.02 16 11 O -0.57 -21.53 15.14 -4.07 -0.06 -21.60 16 12 N -0.61 -19.35 3.43 -819.05 -2.81 -22.16 16 13 C 0.15 3.81 5.42 84.99 0.46 4.27 16 14 C -0.11 -2.80 2.75 -10.57 -0.03 -2.83 16 15 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 16 C -0.08 -2.09 6.71 31.23 0.21 -1.88 16 17 C -0.14 -4.43 6.76 32.90 0.22 -4.21 16 18 C 0.19 7.32 3.39 45.14 0.15 7.47 16 19 H 0.05 2.07 8.10 -2.39 -0.02 2.05 16 20 N -0.73 -37.28 5.11 -322.24 -1.65 -38.93 16 21 C -0.24 -13.10 9.97 84.03 0.84 -12.26 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 24 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 25 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 29 C -0.12 -4.02 2.44 -10.62 -0.03 -4.05 16 30 H 0.06 2.36 7.92 -2.39 -0.02 2.34 16 31 C 0.13 4.53 6.77 85.07 0.58 5.11 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 2.13 6.49 -2.39 -0.02 2.12 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 43 H 0.09 2.15 7.37 -2.39 -0.02 2.13 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.05 1.82 7.98 -2.39 -0.02 1.80 16 48 H 0.37 20.60 7.66 -92.71 -0.71 19.89 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 50 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 51 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -72.82 409.36 2.01 -70.82 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.22 Total: 31.68 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.60 Total: 10.12 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -6.79 Total: -135.90 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -72.82 2.01 -70.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026267163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.085 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds