Wall clock time and date at job start Wed Apr 1 2020 04:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30012 * 127.33135 * 2 1 4 4 O 1.20655 * 112.30081 * 180.02562 * 3 2 1 5 5 C 1.33499 * 113.15483 * 359.75688 * 4 3 2 6 6 C 1.50706 * 126.82567 * 180.30027 * 5 4 3 7 7 C 1.52994 * 109.47012 * 300.10551 * 6 5 4 8 8 C 1.52996 * 109.47115 * 60.10886 * 6 5 4 9 9 C 1.37352 * 106.33961 * 0.38975 * 5 4 3 10 10 C 1.47406 * 128.56264 * 179.91128 * 9 5 4 11 11 O 1.21608 * 120.00189 * 269.70139 * 10 9 5 12 12 N 1.34780 * 119.99689 * 89.69888 * 10 9 5 13 13 C 1.47212 * 126.70525 * 359.97438 * 12 10 9 14 14 C 1.53774 * 106.37795 * 148.75614 * 13 12 10 15 15 H 1.08998 * 111.70693 * 256.37474 * 14 13 12 16 16 C 1.54318 * 109.06143 * 132.42811 * 14 13 12 17 17 C 1.55061 * 103.93850 * 221.16669 * 16 14 13 18 18 C 1.55049 * 102.10879 * 40.05325 * 17 16 14 19 19 H 1.09002 * 110.53554 * 78.70380 * 18 17 16 20 20 N 1.46499 * 110.53624 * 201.33419 * 18 17 16 21 21 C 1.36939 * 119.99547 * 273.54938 * 20 18 17 22 22 H 1.07993 * 120.00716 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99459 * 179.97438 * 21 20 18 24 24 N 1.31619 * 120.00154 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99635 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 269.99668 * 25 23 21 27 27 H 1.48503 * 109.47261 * 149.99848 * 25 23 21 28 28 H 1.48500 * 109.47454 * 29.99841 * 25 23 21 29 29 C 1.54325 * 103.93803 * 319.94817 * 18 17 16 30 30 H 1.09003 * 111.68602 * 262.78961 * 29 18 17 31 31 C 1.47218 * 126.69747 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.46982 * 269.99374 * 1 2 3 33 33 H 1.08995 * 109.47434 * 29.99923 * 1 2 3 34 34 H 1.09002 * 109.47084 * 150.00265 * 1 2 3 35 35 H 1.09002 * 109.46136 * 180.10433 * 6 5 4 36 36 H 1.08999 * 109.47517 * 299.99907 * 7 6 5 37 37 H 1.08997 * 109.47092 * 60.00672 * 7 6 5 38 38 H 1.09000 * 109.46957 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.47379 * 59.99580 * 8 6 5 40 40 H 1.08995 * 109.47253 * 179.97438 * 8 6 5 41 41 H 1.09002 * 109.46975 * 299.99787 * 8 6 5 42 42 H 1.09004 * 110.06922 * 29.52815 * 13 12 10 43 43 H 1.08992 * 110.12002 * 268.01298 * 13 12 10 44 44 H 1.09001 * 110.53873 * 102.55279 * 16 14 13 45 45 H 1.08996 * 110.65749 * 339.83857 * 16 14 13 46 46 H 1.08999 * 110.89694 * 281.85578 * 17 16 14 47 47 H 1.08997 * 110.93342 * 158.27232 * 17 16 14 48 48 H 0.96998 * 120.00185 * 93.54321 * 20 18 17 49 49 H 0.96993 * 120.00007 * 0.02562 * 24 23 21 50 50 H 1.08998 * 110.07384 * 330.47081 * 31 12 10 51 51 H 1.08993 * 110.07290 * 92.01552 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6007 0.0043 6 6 4.9713 -1.3244 0.0115 7 6 5.7707 -0.9386 -1.2346 8 6 5.7592 -0.9350 1.2638 9 6 2.3992 -1.1695 -0.0007 10 6 2.0402 -2.5992 -0.0003 11 8 1.8916 -3.1891 -1.0532 12 7 1.8766 -3.2525 1.1672 13 6 2.0195 -2.6877 2.5191 14 6 1.0372 -3.4581 3.4170 15 1 0.1469 -2.8696 3.6383 16 6 1.7673 -3.8941 4.7047 17 6 1.2584 -5.3378 4.9521 18 6 1.2271 -5.9221 3.5162 19 1 2.2299 -6.2064 3.1972 20 7 0.3226 -7.0725 3.4491 21 6 0.7819 -8.3238 3.7632 22 1 1.8109 -8.4626 4.0599 23 6 -0.0754 -9.4138 3.7001 24 7 -1.3297 -9.2445 3.3389 25 14 0.5512 -11.1207 4.1278 26 1 1.0750 -11.7771 2.9030 27 1 -0.5611 -11.9308 4.6864 28 1 1.6378 -11.0115 5.1341 29 6 0.6904 -4.7604 2.6538 30 1 -0.3812 -4.8521 2.4764 31 6 1.5210 -4.6707 1.3394 32 1 -0.3633 -0.0001 1.0277 33 1 -0.3634 0.8899 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 4.7963 -2.4003 0.0122 36 1 5.2094 -1.2161 -2.1268 37 1 5.9456 0.1373 -1.2353 38 1 6.7266 -1.4624 -1.2297 39 1 5.1896 -1.2098 2.1516 40 1 6.7150 -1.4587 1.2692 41 1 5.9340 0.1409 1.2630 42 1 1.7659 -1.6276 2.5104 43 1 3.0399 -2.8250 2.8768 44 1 1.4952 -3.2450 5.5370 45 1 2.8469 -3.8897 4.5549 46 1 0.2603 -5.3285 5.3900 47 1 1.9528 -5.8928 5.5828 48 1 -0.6016 -6.9479 3.1823 49 1 -1.6550 -8.3582 3.1165 50 1 0.9157 -5.0094 0.4985 51 1 2.4241 -5.2758 1.4187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:09 Heat of formation + Delta-G solvation = 6.019980 kcal Electronic energy + Delta-G solvation = -31758.697625 eV Core-core repulsion = 27660.111891 eV Total energy + Delta-G solvation = -4098.585734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.03350 -41.56178 -39.80298 -37.10247 -36.94617 -35.72325 -35.26745 -32.66825 -32.25009 -30.74864 -29.88623 -29.73958 -28.12753 -26.83738 -26.03248 -24.87546 -24.01072 -23.96240 -21.77438 -21.04508 -20.51986 -20.16916 -19.40475 -18.97656 -18.59451 -17.72107 -17.34917 -16.92870 -16.63410 -16.28466 -15.95440 -15.56256 -15.35614 -15.17129 -14.90843 -14.57789 -14.44488 -14.38313 -14.16886 -13.94687 -13.83721 -13.80573 -13.41699 -13.16519 -13.08990 -12.72363 -12.65623 -12.52625 -12.39404 -12.31278 -12.28386 -12.07903 -11.89446 -11.86633 -11.68131 -11.65097 -11.55070 -11.41443 -11.18001 -11.01472 -10.86294 -10.54794 -9.96394 -9.06463 -8.35988 -5.29501 0.17371 0.73793 1.10319 1.54769 1.58849 1.69096 1.82694 1.97566 2.72524 2.93025 3.05688 3.22525 3.35342 3.44465 3.58064 3.64275 3.71355 3.88551 3.92565 4.00366 4.07418 4.09768 4.21122 4.34555 4.35190 4.38633 4.48832 4.49561 4.51135 4.54757 4.61619 4.62800 4.74277 4.74826 4.81246 4.83917 4.89353 4.94591 4.96041 4.99469 5.03533 5.05458 5.18020 5.24759 5.30587 5.31880 5.38730 5.50824 5.65171 6.26024 6.52465 6.79022 7.08311 7.12775 8.02992 8.14490 9.16199 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.002601 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.367625 B =10764.423650 C =11015.503750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.369 5.369 4 O 0.101 5.899 5 C 0.044 3.956 6 C -0.019 4.019 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.266 4.266 10 C 0.618 3.382 11 O -0.572 6.572 12 N -0.598 5.598 13 C 0.110 3.890 14 C -0.090 4.090 15 H 0.101 0.899 16 C -0.101 4.101 17 C -0.137 4.137 18 C 0.181 3.819 19 H 0.051 0.949 20 N -0.747 5.747 21 C -0.323 4.323 22 H 0.067 0.933 23 C -0.107 4.107 24 N -0.979 5.979 25 Si 1.126 2.874 26 H -0.288 1.288 27 H -0.296 1.296 28 H -0.271 1.271 29 C -0.097 4.097 30 H 0.075 0.925 31 C 0.120 3.880 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.358 0.642 49 H 0.244 0.756 50 H 0.054 0.946 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.078 23.598 -1.619 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 N -0.077 5.077 4 O 0.041 5.959 5 C -0.020 4.020 6 C -0.039 4.039 7 C -0.205 4.205 8 C -0.202 4.202 9 C -0.273 4.273 10 C 0.406 3.594 11 O -0.452 6.452 12 N -0.330 5.330 13 C -0.011 4.011 14 C -0.109 4.109 15 H 0.120 0.880 16 C -0.139 4.139 17 C -0.178 4.178 18 C 0.072 3.928 19 H 0.068 0.932 20 N -0.388 5.388 21 C -0.454 4.454 22 H 0.085 0.915 23 C -0.298 4.298 24 N -0.628 5.628 25 Si 0.952 3.048 26 H -0.215 1.215 27 H -0.222 1.222 28 H -0.196 1.196 29 C -0.117 4.117 30 H 0.093 0.907 31 C -0.003 4.003 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.190 0.810 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.678 23.029 -2.059 26.863 hybrid contribution -0.665 0.343 -0.596 0.957 sum 13.013 23.372 -2.655 26.882 Atomic orbital electron populations 1.20342 0.83738 1.04521 1.05059 1.25073 0.99542 0.85974 1.00281 1.73616 0.89433 1.23480 1.21126 1.84493 1.21138 1.22528 1.67752 1.25055 0.97219 0.83382 0.96296 1.20099 0.86227 0.97735 0.99813 1.21893 1.00506 1.03352 0.94752 1.21896 1.00564 1.03286 0.94441 1.21678 0.93965 0.94014 1.17630 1.16674 0.76293 0.84336 0.82113 1.90823 1.52996 1.69151 1.32207 1.48493 1.67002 1.11275 1.06181 1.22489 1.00632 0.98551 0.79471 1.22547 0.98955 0.94354 0.95071 0.88050 1.22447 1.00169 0.94929 0.96343 1.23099 1.00154 0.96465 0.98058 1.21411 0.92655 0.85090 0.93610 0.93150 1.42666 1.09789 1.03974 1.82378 1.20367 0.96988 0.87189 1.40883 0.91499 1.27089 0.94834 1.06597 1.01276 1.70959 1.16372 1.23827 1.51611 0.82635 0.74477 0.71312 0.76416 1.21506 1.22227 1.19619 1.23042 0.99050 0.95891 0.93716 0.90654 1.22372 0.98913 0.81262 0.97751 0.87811 0.88573 0.90643 0.89028 0.93486 0.90703 0.88948 0.91857 0.89185 0.90855 0.89419 0.88813 0.89457 0.89714 0.93296 0.92836 0.81006 0.94556 0.92695 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.49 71.24 0.75 -0.62 16 2 C 0.05 1.19 7.59 45.16 0.34 1.53 16 3 N -0.37 -8.38 12.01 -44.79 -0.54 -8.92 16 4 O 0.10 2.07 11.06 76.93 0.85 2.92 16 5 C 0.04 0.87 6.06 25.48 0.15 1.02 16 6 C -0.02 -0.28 3.33 -11.54 -0.04 -0.31 16 7 C -0.15 -1.78 9.18 71.98 0.66 -1.12 16 8 C -0.14 -1.33 9.18 71.98 0.66 -0.67 16 9 C -0.27 -6.33 5.10 -18.75 -0.10 -6.43 16 10 C 0.62 17.85 7.36 86.66 0.64 18.48 16 11 O -0.57 -21.56 17.34 -4.06 -0.07 -21.63 16 12 N -0.60 -15.25 3.32 -815.13 -2.71 -17.95 16 13 C 0.11 2.02 6.37 86.50 0.55 2.57 16 14 C -0.09 -1.86 3.86 -9.45 -0.04 -1.90 16 15 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.10 -2.01 6.34 31.75 0.20 -1.81 16 17 C -0.14 -4.23 6.60 32.00 0.21 -4.02 16 18 C 0.18 6.56 3.03 46.14 0.14 6.70 16 19 H 0.05 1.90 7.20 -2.39 -0.02 1.88 16 20 N -0.75 -36.22 5.23 -317.50 -1.66 -37.88 16 21 C -0.32 -17.69 9.97 84.03 0.84 -16.85 16 22 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 23 C -0.11 -6.16 5.50 84.86 0.47 -5.70 16 24 N -0.98 -61.28 13.70 21.65 0.30 -60.98 16 25 Si 1.13 51.86 29.92 68.60 2.05 53.91 16 26 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 C -0.10 -2.87 3.70 -8.76 -0.03 -2.90 16 30 H 0.08 2.48 7.78 -2.39 -0.02 2.46 16 31 C 0.12 3.62 6.59 87.19 0.57 4.20 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.54 7.70 -2.39 -0.02 1.52 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 1.38 7.51 -2.39 -0.02 1.36 16 43 H 0.09 1.40 7.14 -2.39 -0.02 1.38 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.43 7.21 -2.39 -0.02 1.41 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.36 18.42 6.40 -92.71 -0.59 17.83 16 49 H 0.24 15.19 6.77 -92.71 -0.63 14.56 16 50 H 0.05 1.93 7.92 -2.39 -0.02 1.92 16 51 H 0.07 2.27 7.20 -2.39 -0.02 2.25 16 Total: -1.00 -74.09 410.65 4.69 -69.40 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.48 Total: 28.94 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.98 Total: -7.81 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -4.61 Total: -125.74 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.78 Total: -18.71 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Total: -74.09 4.69 -69.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.421 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds