Wall clock time and date at job start Wed Apr 1 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30013 * 127.33547 * 2 1 4 4 O 1.20659 * 112.30151 * 180.28033 * 3 2 1 5 5 C 1.33491 * 113.15619 * 359.72916 * 4 3 2 6 6 C 1.50697 * 126.82678 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47346 * 300.00313 * 6 5 4 8 8 C 1.53005 * 109.46913 * 60.00517 * 6 5 4 9 9 C 1.37362 * 106.34101 * 0.02562 * 5 4 3 10 10 C 1.47403 * 128.56144 * 179.97438 * 9 5 4 11 11 O 1.21611 * 120.00025 * 89.99627 * 10 9 5 12 12 N 1.34771 * 119.99857 * 269.99569 * 10 9 5 13 13 C 1.49214 * 126.05832 * 0.02562 * 12 10 9 14 14 C 1.50352 * 104.85922 * 172.93323 * 13 12 10 15 15 H 1.09001 * 110.04671 * 278.95672 * 14 13 12 16 16 C 1.50991 * 125.57383 * 144.33414 * 14 13 12 17 17 C 1.56399 * 101.59815 * 203.97654 * 16 14 13 18 18 C 1.54944 * 105.61608 * 24.46582 * 17 16 14 19 19 H 1.08996 * 109.34039 * 126.79265 * 18 17 16 20 20 N 1.46500 * 111.17291 * 249.12391 * 18 17 16 21 21 C 1.36933 * 120.00304 * 270.74135 * 20 18 17 22 22 H 1.08006 * 119.99966 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00400 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99638 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00366 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47035 * 89.99790 * 25 23 21 27 27 H 1.48497 * 109.47521 * 209.99754 * 25 23 21 28 28 H 1.48500 * 109.46948 * 330.00101 * 25 23 21 29 29 C 1.50297 * 104.64655 * 8.41797 * 18 17 16 30 30 H 1.09002 * 109.99891 * 79.41323 * 29 18 17 31 31 C 1.49698 * 126.05662 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.46644 * 270.13888 * 1 2 3 33 33 H 1.08991 * 109.47377 * 30.14499 * 1 2 3 34 34 H 1.09001 * 109.46785 * 150.14960 * 1 2 3 35 35 H 1.09005 * 109.47135 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.46926 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47440 * 299.99897 * 7 6 5 38 38 H 1.08995 * 109.47077 * 60.00344 * 7 6 5 39 39 H 1.09001 * 109.47382 * 59.99818 * 8 6 5 40 40 H 1.08997 * 109.46807 * 179.97438 * 8 6 5 41 41 H 1.08998 * 109.47125 * 300.00028 * 8 6 5 42 42 H 1.08996 * 110.35983 * 291.77327 * 13 12 10 43 43 H 1.08991 * 110.36389 * 53.97724 * 13 12 10 44 44 H 1.08998 * 110.99959 * 322.05267 * 16 14 13 45 45 H 1.09001 * 111.00066 * 85.85657 * 16 14 13 46 46 H 1.08996 * 110.19173 * 144.09549 * 17 16 14 47 47 H 1.09004 * 110.18497 * 265.86335 * 17 16 14 48 48 H 0.97007 * 119.99963 * 90.73384 * 20 18 17 49 49 H 0.97002 * 119.99770 * 179.97438 * 24 23 21 50 50 H 1.08994 * 110.84799 * 36.67241 * 31 12 10 51 51 H 1.08999 * 111.01881 * 273.13216 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 -0.0055 5 6 3.6495 -0.6008 -0.0043 6 6 4.9712 -1.3245 -0.0094 7 6 5.7592 -0.9388 -1.2628 8 6 5.7707 -0.9350 1.2357 9 6 2.3992 -1.1696 0.0024 10 6 2.0402 -2.5992 0.0058 11 8 1.8972 -3.1878 1.0603 12 7 1.8703 -3.2541 -1.1599 13 6 2.0116 -2.6684 -2.5250 14 6 1.8972 -3.8396 -3.4608 15 1 2.8513 -4.3629 -3.5228 16 6 1.2393 -3.8173 -4.8196 17 6 0.8639 -5.3233 -5.0120 18 6 0.7531 -5.9114 -3.5829 19 1 -0.2134 -6.4021 -3.4683 20 7 1.8428 -6.8524 -3.3120 21 6 1.6936 -8.1790 -3.6169 22 1 0.7723 -8.5317 -4.0567 23 6 2.7262 -9.0706 -3.3608 24 7 3.8491 -8.6407 -2.8253 25 14 2.5224 -10.8804 -3.7760 26 1 2.9881 -11.1251 -5.1647 27 1 3.3264 -11.6984 -2.8329 28 1 1.0904 -11.2564 -3.6608 29 6 0.8491 -4.7192 -2.6728 30 1 -0.1108 -4.2043 -2.6305 31 6 1.5064 -4.6979 -1.3144 32 1 -0.3632 0.0025 1.0277 33 1 -0.3633 0.8886 -0.5160 34 1 -0.3633 -0.8913 -0.5115 35 1 4.7964 -2.4005 -0.0065 36 1 6.7154 -1.4620 -1.2662 37 1 5.1897 -1.2163 -2.1498 38 1 5.9341 0.1370 -1.2652 39 1 5.2094 -1.2098 2.1287 40 1 6.7266 -1.4589 1.2322 41 1 5.9456 0.1409 1.2333 42 1 1.2124 -1.9519 -2.7148 43 1 2.9840 -2.1882 -2.6329 44 1 0.3476 -3.1904 -4.8116 45 1 1.9393 -3.4873 -5.5872 46 1 -0.0860 -5.4098 -5.5395 47 1 1.6490 -5.8389 -5.5650 48 1 2.6702 -6.5357 -2.9168 49 1 4.5706 -9.2637 -2.6460 50 1 0.8049 -5.0063 -0.5393 51 1 2.3954 -5.3284 -1.3039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:17 Heat of formation + Delta-G solvation = 43.796712 kcal Electronic energy + Delta-G solvation = -32078.108959 eV Core-core repulsion = 27981.161347 eV Total energy + Delta-G solvation = -4096.947612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.02137 -40.55495 -38.63498 -36.28252 -35.27562 -34.69443 -33.35820 -31.25891 -30.89156 -29.46406 -28.91808 -28.56879 -27.47746 -25.69830 -24.75938 -23.37075 -23.12831 -22.63520 -20.07653 -20.00953 -19.22365 -18.87155 -17.88783 -17.55247 -17.43108 -16.36766 -16.14575 -15.68253 -15.17669 -14.90779 -14.41443 -14.41141 -14.11184 -13.72468 -13.67135 -13.60782 -13.45321 -13.41427 -13.07726 -12.92251 -12.70661 -12.49039 -12.38358 -11.94619 -11.75588 -11.62917 -11.58413 -11.54609 -11.28604 -11.08003 -11.01239 -10.87765 -10.68712 -10.56317 -10.28869 -10.16897 -10.11217 -9.99476 -9.66558 -9.62343 -9.52254 -8.96194 -8.62237 -7.02278 -5.81576 -3.10647 1.16515 1.75170 2.39742 2.61739 3.02460 3.40916 3.46848 3.48210 3.87924 3.98856 4.14158 4.49169 4.55618 4.55989 4.72249 4.76673 4.87643 4.98394 5.15168 5.17621 5.23688 5.27868 5.34402 5.36051 5.38190 5.44433 5.48005 5.51229 5.53374 5.57524 5.58818 5.72296 5.73752 5.77751 5.80244 5.88576 5.92738 5.94582 5.96968 6.07915 6.20889 6.23276 6.33849 6.39282 6.48026 6.61092 6.78077 6.99914 7.47335 7.67341 8.06170 8.08935 8.36841 9.48436 10.03935 10.38500 11.40822 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003015 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.152820 B = 9285.109010 C =10059.342468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.358 5.358 4 O 0.098 5.902 5 C 0.026 3.974 6 C -0.018 4.018 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.238 4.238 10 C 0.611 3.389 11 O -0.527 6.527 12 N -0.612 5.612 13 C 0.124 3.876 14 C -0.128 4.128 15 H 0.091 0.909 16 C -0.095 4.095 17 C -0.146 4.146 18 C 0.195 3.805 19 H 0.054 0.946 20 N -0.717 5.717 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.119 4.119 30 H 0.076 0.924 31 C 0.132 3.868 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.079 0.921 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 19.481 1.647 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.064 5.064 4 O 0.037 5.963 5 C -0.038 4.038 6 C -0.037 4.037 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.245 4.245 10 C 0.397 3.603 11 O -0.404 6.404 12 N -0.346 5.346 13 C 0.002 3.998 14 C -0.147 4.147 15 H 0.109 0.891 16 C -0.133 4.133 17 C -0.186 4.186 18 C 0.083 3.917 19 H 0.072 0.928 20 N -0.359 5.359 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.139 4.139 30 H 0.094 0.906 31 C 0.011 3.989 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.557 20.329 2.274 20.515 hybrid contribution 0.114 -1.644 -0.173 1.657 sum -1.443 18.685 2.101 18.858 Atomic orbital electron populations 1.20208 0.85231 1.04015 1.03914 1.24706 0.98507 0.86554 1.01134 1.73603 0.89183 1.23340 1.20321 1.84490 1.21357 1.22561 1.67940 1.24636 0.96896 0.83557 0.98677 1.19943 0.86931 0.98867 0.97988 1.21886 1.00363 1.02448 0.95887 1.21875 1.00175 1.02364 0.96179 1.21915 0.92717 0.95242 1.14668 1.16439 0.77361 0.83642 0.82853 1.90843 1.51113 1.68035 1.30374 1.49800 1.67991 1.11869 1.04959 1.21242 1.01172 0.95892 0.81446 1.22235 1.00978 0.96040 0.95493 0.89088 1.21708 0.99113 0.98042 0.94469 1.23703 1.01141 0.93489 1.00306 1.19907 0.93326 0.88196 0.90253 0.92774 1.42413 1.14844 1.04203 1.74414 1.19241 0.99550 0.84167 1.34261 0.91115 1.24721 0.96304 0.98043 1.01600 1.69646 1.05263 1.34031 1.49057 0.86218 0.77228 0.85339 0.77555 1.21789 1.21815 1.20761 1.22473 0.98000 0.99373 0.94098 0.90580 1.21513 1.00903 0.79398 0.97037 0.89637 0.89947 0.89889 0.87761 0.90756 0.91916 0.91650 0.91883 0.90838 0.91682 0.91592 0.91441 0.92083 0.92032 0.92687 0.90530 0.78138 0.93480 0.90231 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.49 36.01 0.38 -0.35 16 2 C 0.05 0.67 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.65 12.01 34.78 0.42 -4.24 16 4 O 0.10 1.20 11.06 18.66 0.21 1.41 16 5 C 0.03 0.31 6.06 -34.63 -0.21 0.10 16 6 C -0.02 -0.18 3.33 -91.77 -0.31 -0.48 16 7 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 8 C -0.15 -1.26 9.18 37.16 0.34 -0.92 16 9 C -0.24 -3.23 5.47 -102.89 -0.56 -3.80 16 10 C 0.61 9.64 7.36 -12.53 -0.09 9.54 16 11 O -0.53 -10.24 17.44 5.27 0.09 -10.15 16 12 N -0.61 -8.91 3.43 -172.84 -0.59 -9.50 16 13 C 0.12 1.51 6.39 -3.86 -0.02 1.49 16 14 C -0.13 -1.73 2.72 -90.27 -0.25 -1.97 16 15 H 0.09 1.44 7.60 -51.93 -0.39 1.05 16 16 C -0.10 -1.19 6.72 -25.91 -0.17 -1.36 16 17 C -0.15 -2.26 6.74 -23.88 -0.16 -2.42 16 18 C 0.19 3.48 3.34 -68.25 -0.23 3.25 16 19 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 20 N -0.72 -16.42 4.81 -53.74 -0.26 -16.68 16 21 C -0.24 -6.31 9.96 -15.06 -0.15 -6.46 16 22 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 25 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C -0.12 -1.80 2.65 -90.33 -0.24 -2.03 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 C 0.13 2.16 6.52 -3.31 -0.02 2.14 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.18 7.71 -51.93 -0.40 0.78 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 48 H 0.38 9.35 6.14 -40.82 -0.25 9.10 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 51 H 0.09 1.68 6.92 -51.93 -0.36 1.32 16 LS Contribution 412.65 15.07 6.22 6.22 Total: -1.00 -30.95 412.65 -8.82 -39.77 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.55 Total: 7.19 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.05 Total: -4.46 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.29 Total: -56.70 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.30 Total: -8.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.95 -8.82 -39.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.566 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds