Wall clock time and date at job start Wed Apr 1 2020 04:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30013 * 127.33547 * 2 1 4 4 O 1.20659 * 112.30151 * 180.28033 * 3 2 1 5 5 C 1.33491 * 113.15619 * 359.72916 * 4 3 2 6 6 C 1.50697 * 126.82678 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47346 * 300.00313 * 6 5 4 8 8 C 1.53005 * 109.46913 * 60.00517 * 6 5 4 9 9 C 1.37362 * 106.34101 * 0.02562 * 5 4 3 10 10 C 1.47403 * 128.56144 * 179.97438 * 9 5 4 11 11 O 1.21611 * 120.00025 * 89.99627 * 10 9 5 12 12 N 1.34771 * 119.99857 * 269.99569 * 10 9 5 13 13 C 1.49214 * 126.05832 * 0.02562 * 12 10 9 14 14 C 1.50352 * 104.85922 * 172.93323 * 13 12 10 15 15 H 1.09001 * 110.04671 * 278.95672 * 14 13 12 16 16 C 1.50991 * 125.57383 * 144.33414 * 14 13 12 17 17 C 1.56399 * 101.59815 * 203.97654 * 16 14 13 18 18 C 1.54944 * 105.61608 * 24.46582 * 17 16 14 19 19 H 1.08996 * 109.34039 * 126.79265 * 18 17 16 20 20 N 1.46500 * 111.17291 * 249.12391 * 18 17 16 21 21 C 1.36933 * 120.00304 * 270.74135 * 20 18 17 22 22 H 1.08006 * 119.99966 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00400 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99638 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00366 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47035 * 89.99790 * 25 23 21 27 27 H 1.48497 * 109.47521 * 209.99754 * 25 23 21 28 28 H 1.48500 * 109.46948 * 330.00101 * 25 23 21 29 29 C 1.50297 * 104.64655 * 8.41797 * 18 17 16 30 30 H 1.09002 * 109.99891 * 79.41323 * 29 18 17 31 31 C 1.49698 * 126.05662 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.46644 * 270.13888 * 1 2 3 33 33 H 1.08991 * 109.47377 * 30.14499 * 1 2 3 34 34 H 1.09001 * 109.46785 * 150.14960 * 1 2 3 35 35 H 1.09005 * 109.47135 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.46926 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47440 * 299.99897 * 7 6 5 38 38 H 1.08995 * 109.47077 * 60.00344 * 7 6 5 39 39 H 1.09001 * 109.47382 * 59.99818 * 8 6 5 40 40 H 1.08997 * 109.46807 * 179.97438 * 8 6 5 41 41 H 1.08998 * 109.47125 * 300.00028 * 8 6 5 42 42 H 1.08996 * 110.35983 * 291.77327 * 13 12 10 43 43 H 1.08991 * 110.36389 * 53.97724 * 13 12 10 44 44 H 1.08998 * 110.99959 * 322.05267 * 16 14 13 45 45 H 1.09001 * 111.00066 * 85.85657 * 16 14 13 46 46 H 1.08996 * 110.19173 * 144.09549 * 17 16 14 47 47 H 1.09004 * 110.18497 * 265.86335 * 17 16 14 48 48 H 0.97007 * 119.99963 * 90.73384 * 20 18 17 49 49 H 0.97002 * 119.99770 * 179.97438 * 24 23 21 50 50 H 1.08994 * 110.84799 * 36.67241 * 31 12 10 51 51 H 1.08999 * 111.01881 * 273.13216 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 -0.0055 5 6 3.6495 -0.6008 -0.0043 6 6 4.9712 -1.3245 -0.0094 7 6 5.7592 -0.9388 -1.2628 8 6 5.7707 -0.9350 1.2357 9 6 2.3992 -1.1696 0.0024 10 6 2.0402 -2.5992 0.0058 11 8 1.8972 -3.1878 1.0603 12 7 1.8703 -3.2541 -1.1599 13 6 2.0116 -2.6684 -2.5250 14 6 1.8972 -3.8396 -3.4608 15 1 2.8513 -4.3629 -3.5228 16 6 1.2393 -3.8173 -4.8196 17 6 0.8639 -5.3233 -5.0120 18 6 0.7531 -5.9114 -3.5829 19 1 -0.2134 -6.4021 -3.4683 20 7 1.8428 -6.8524 -3.3120 21 6 1.6936 -8.1790 -3.6169 22 1 0.7723 -8.5317 -4.0567 23 6 2.7262 -9.0706 -3.3608 24 7 3.8491 -8.6407 -2.8253 25 14 2.5224 -10.8804 -3.7760 26 1 2.9881 -11.1251 -5.1647 27 1 3.3264 -11.6984 -2.8329 28 1 1.0904 -11.2564 -3.6608 29 6 0.8491 -4.7192 -2.6728 30 1 -0.1108 -4.2043 -2.6305 31 6 1.5064 -4.6979 -1.3144 32 1 -0.3632 0.0025 1.0277 33 1 -0.3633 0.8886 -0.5160 34 1 -0.3633 -0.8913 -0.5115 35 1 4.7964 -2.4005 -0.0065 36 1 6.7154 -1.4620 -1.2662 37 1 5.1897 -1.2163 -2.1498 38 1 5.9341 0.1370 -1.2652 39 1 5.2094 -1.2098 2.1287 40 1 6.7266 -1.4589 1.2322 41 1 5.9456 0.1409 1.2333 42 1 1.2124 -1.9519 -2.7148 43 1 2.9840 -2.1882 -2.6329 44 1 0.3476 -3.1904 -4.8116 45 1 1.9393 -3.4873 -5.5872 46 1 -0.0860 -5.4098 -5.5395 47 1 1.6490 -5.8389 -5.5650 48 1 2.6702 -6.5357 -2.9168 49 1 4.5706 -9.2637 -2.6460 50 1 0.8049 -5.0063 -0.5393 51 1 2.3954 -5.3284 -1.3039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:16 Heat of formation + Delta-G solvation = 26.563889 kcal Electronic energy + Delta-G solvation = -32078.856230 eV Core-core repulsion = 27981.161347 eV Total energy + Delta-G solvation = -4097.694883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.98780 -41.80360 -39.93504 -37.09944 -36.73177 -35.65774 -35.04874 -32.59003 -32.23910 -30.69716 -29.98955 -29.74649 -28.14644 -27.12250 -25.90531 -25.17726 -23.95124 -23.83956 -21.19811 -21.05914 -20.37802 -20.10869 -19.41020 -18.85240 -18.55872 -17.57224 -17.30386 -16.85014 -16.46453 -16.32437 -15.80153 -15.68342 -15.23432 -15.02924 -14.90301 -14.59739 -14.42752 -14.35083 -14.16976 -13.90293 -13.82122 -13.67427 -13.28266 -13.16394 -13.10298 -12.86442 -12.67934 -12.60732 -12.42254 -12.38087 -12.29949 -12.21650 -12.07031 -11.90741 -11.85728 -11.51622 -11.40468 -11.34200 -10.99350 -10.93825 -10.87099 -10.51638 -9.88460 -8.95546 -7.90986 -5.17768 0.19404 0.78073 1.18641 1.48950 1.49613 1.53039 1.57608 1.95409 2.58703 2.88408 3.02497 3.10054 3.43417 3.46888 3.69641 3.74989 3.86796 3.94375 3.99220 4.01905 4.12132 4.21739 4.26709 4.36971 4.41413 4.44669 4.51880 4.53849 4.57537 4.63952 4.69087 4.70789 4.73252 4.82998 4.85716 4.86721 4.91714 4.99735 5.02563 5.03464 5.06075 5.15745 5.22842 5.23487 5.28998 5.38391 5.46148 5.56452 5.69154 6.27385 6.31938 6.84430 7.10438 7.38446 8.15442 8.37258 9.32329 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003015 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.152820 B = 9285.109010 C =10059.342468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.369 5.369 4 O 0.099 5.901 5 C 0.041 3.959 6 C -0.021 4.021 7 C -0.144 4.144 8 C -0.146 4.146 9 C -0.263 4.263 10 C 0.615 3.385 11 O -0.574 6.574 12 N -0.606 5.606 13 C 0.128 3.872 14 C -0.113 4.113 15 H 0.060 0.940 16 C -0.081 4.081 17 C -0.139 4.139 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.729 5.729 21 C -0.233 4.233 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.965 3.035 26 H -0.289 1.289 27 H -0.301 1.301 28 H -0.271 1.271 29 C -0.117 4.117 30 H 0.104 0.896 31 C 0.135 3.865 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.046 0.954 48 H 0.373 0.627 49 H 0.248 0.752 50 H 0.066 0.934 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 21.806 0.182 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 N -0.077 5.077 4 O 0.040 5.960 5 C -0.023 4.023 6 C -0.040 4.040 7 C -0.201 4.201 8 C -0.203 4.203 9 C -0.271 4.271 10 C 0.403 3.597 11 O -0.454 6.454 12 N -0.339 5.339 13 C 0.008 3.992 14 C -0.132 4.132 15 H 0.079 0.921 16 C -0.119 4.119 17 C -0.179 4.179 18 C 0.075 3.925 19 H 0.067 0.933 20 N -0.369 5.369 21 C -0.365 4.365 22 H 0.094 0.906 23 C -0.266 4.266 24 N -0.620 5.620 25 Si 0.795 3.205 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.196 1.196 29 C -0.137 4.137 30 H 0.122 0.878 31 C 0.014 3.986 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.206 0.794 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.707 22.696 0.754 22.869 hybrid contribution 0.421 -2.348 0.299 2.404 sum -2.285 20.347 1.053 20.502 Atomic orbital electron populations 1.20357 0.83315 1.05168 1.04645 1.25116 0.99690 0.85720 1.00019 1.73597 0.89376 1.23531 1.21234 1.84485 1.21284 1.22337 1.67920 1.24944 0.97149 0.83490 0.96699 1.20050 0.86625 0.97518 0.99818 1.21884 1.00436 1.03393 0.94435 1.21881 1.00374 1.03396 0.94677 1.21739 0.93923 0.94189 1.17215 1.16683 0.76360 0.84389 0.82282 1.90812 1.53238 1.69276 1.32035 1.49791 1.67174 1.10970 1.05949 1.21379 1.03018 0.95556 0.79262 1.22143 0.99009 0.95779 0.96264 0.92124 1.21665 1.00592 0.95973 0.93664 1.23502 1.01261 0.95390 0.97777 1.20200 0.91310 0.88358 0.92677 0.93319 1.42571 1.15758 1.04132 1.74433 1.19622 0.99169 0.85661 1.32083 0.90601 1.25435 0.96460 1.01771 1.02919 1.69801 1.06035 1.34806 1.51354 0.85256 0.77369 0.80978 0.76874 1.21593 1.22805 1.19580 1.22331 0.99712 0.98656 0.92966 0.87829 1.21260 0.99244 0.80326 0.97764 0.89096 0.87947 0.89501 0.89718 0.89572 0.92285 0.90401 0.93333 0.89265 0.90386 0.88762 0.90222 0.88841 0.90631 0.90618 0.93506 0.79386 0.94301 0.91543 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.49 71.24 0.75 -0.56 16 2 C 0.06 1.33 7.59 45.16 0.34 1.67 16 3 N -0.37 -8.92 12.01 -44.78 -0.54 -9.46 16 4 O 0.10 2.26 11.06 77.00 0.85 3.11 16 5 C 0.04 0.94 6.06 25.48 0.15 1.09 16 6 C -0.02 -0.39 3.33 -11.54 -0.04 -0.43 16 7 C -0.14 -2.09 9.18 71.98 0.66 -1.43 16 8 C -0.15 -2.34 9.18 71.98 0.66 -1.68 16 9 C -0.26 -6.94 5.47 -18.74 -0.10 -7.04 16 10 C 0.62 19.53 7.36 86.66 0.64 20.17 16 11 O -0.57 -23.12 17.44 -4.07 -0.07 -23.19 16 12 N -0.61 -17.45 3.43 -818.99 -2.81 -20.26 16 13 C 0.13 2.82 6.39 85.00 0.54 3.37 16 14 C -0.11 -2.83 2.72 -10.56 -0.03 -2.86 16 15 H 0.06 1.92 7.60 -2.39 -0.02 1.91 16 16 C -0.08 -1.73 6.72 31.12 0.21 -1.52 16 17 C -0.14 -4.05 6.74 32.44 0.22 -3.83 16 18 C 0.18 6.47 3.34 44.78 0.15 6.62 16 19 H 0.05 1.76 8.09 -2.39 -0.02 1.74 16 20 N -0.73 -34.21 4.81 -323.93 -1.56 -35.76 16 21 C -0.23 -12.39 9.96 84.03 0.84 -11.56 16 22 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 25 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 29 C -0.12 -3.39 2.65 -10.61 -0.03 -3.42 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 C 0.14 4.57 6.52 85.08 0.56 5.13 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.97 7.71 -2.38 -0.02 1.96 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.05 1.65 7.98 -2.39 -0.02 1.64 16 48 H 0.37 19.05 6.14 -92.70 -0.57 18.48 16 49 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 50 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 51 H 0.05 2.22 6.92 -2.39 -0.02 2.20 16 Total: -1.00 -69.79 412.65 4.53 -65.26 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.36 Total: 30.60 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.99 Total: 0.05 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -4.62 Total: -123.41 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.78 Total: -20.08 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -69.79 4.53 -65.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.827 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds