Wall clock time and date at job start Wed Apr 1 2020 04:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30018 * 127.33228 * 2 1 4 4 O 1.20663 * 112.29754 * 179.97438 * 3 2 1 5 5 C 1.33489 * 113.16067 * 359.72280 * 4 3 2 6 6 C 1.50696 * 126.83176 * 180.31078 * 5 4 3 7 7 C 1.52999 * 109.46735 * 300.16545 * 6 5 4 8 8 C 1.52995 * 109.47419 * 60.16537 * 6 5 4 9 9 C 1.37361 * 106.34015 * 0.44759 * 5 4 3 10 10 C 1.47404 * 128.56566 * 179.86033 * 9 5 4 11 11 O 1.21606 * 119.99505 * 269.42353 * 10 9 5 12 12 N 1.34771 * 119.99896 * 89.70387 * 10 9 5 13 13 C 1.48348 * 128.19886 * 359.67145 * 12 10 9 14 14 C 1.54916 * 104.07067 * 138.26527 * 13 12 10 15 15 H 1.09004 * 111.87231 * 264.27629 * 14 13 12 16 16 C 1.53554 * 109.66234 * 139.81468 * 14 13 12 17 17 C 1.53956 * 106.03148 * 228.77869 * 16 14 13 18 18 C 1.56139 * 104.97516 * 29.86687 * 17 16 14 19 19 H 1.08995 * 109.98139 * 211.62566 * 18 17 16 20 20 N 1.46505 * 111.32621 * 89.21927 * 18 17 16 21 21 C 1.36929 * 119.99880 * 139.07577 * 20 18 17 22 22 H 1.08000 * 120.00023 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00382 * 180.02562 * 21 20 18 24 24 N 1.31616 * 119.99573 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00332 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46972 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46850 * 119.99908 * 25 23 21 28 28 H 1.48495 * 109.47185 * 239.99943 * 25 23 21 29 29 C 1.53559 * 104.96462 * 330.08018 * 18 17 16 30 30 H 1.09001 * 111.65922 * 255.73544 * 29 18 17 31 31 C 1.48352 * 128.19295 * 180.02562 * 12 10 9 32 32 H 1.08992 * 109.47194 * 270.03834 * 1 2 3 33 33 H 1.08997 * 109.47185 * 30.04129 * 1 2 3 34 34 H 1.09005 * 109.46680 * 150.03939 * 1 2 3 35 35 H 1.09002 * 109.47139 * 180.17048 * 6 5 4 36 36 H 1.09000 * 109.47314 * 60.00048 * 7 6 5 37 37 H 1.09006 * 109.47172 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47503 * 300.00156 * 7 6 5 39 39 H 1.09006 * 109.47200 * 180.02562 * 8 6 5 40 40 H 1.09002 * 109.47382 * 300.00362 * 8 6 5 41 41 H 1.09001 * 109.46812 * 60.00512 * 8 6 5 42 42 H 1.09000 * 110.47894 * 257.00532 * 13 12 10 43 43 H 1.09006 * 110.47021 * 19.60772 * 13 12 10 44 44 H 1.09005 * 110.14271 * 347.91849 * 16 14 13 45 45 H 1.08994 * 110.14316 * 109.57037 * 16 14 13 46 46 H 1.08998 * 110.35705 * 148.41455 * 17 16 14 47 47 H 1.08997 * 110.36089 * 270.60516 * 17 16 14 48 48 H 0.97000 * 120.00192 * 319.07722 * 20 18 17 49 49 H 0.97002 * 120.00185 * 179.97438 * 24 23 21 50 50 H 1.08996 * 110.47361 * 340.40271 * 31 12 10 51 51 H 1.09000 * 110.47190 * 102.87268 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0069 6 6 4.9712 -1.3244 0.0158 7 6 5.7722 -0.9388 -1.2294 8 6 5.7576 -0.9348 1.2690 9 6 2.3992 -1.1696 0.0005 10 6 2.0402 -2.5992 0.0007 11 8 1.8879 -3.1880 -1.0524 12 7 1.8751 -3.2523 1.1680 13 6 2.0146 -2.7191 2.5453 14 6 0.8233 -3.3439 3.3136 15 1 -0.0332 -2.6708 3.3515 16 6 1.2777 -3.7629 4.7192 17 6 0.7806 -5.2069 4.9139 18 6 0.7703 -5.8268 3.4809 19 1 -0.0288 -6.5636 3.3996 20 7 2.0599 -6.4420 3.1572 21 6 2.0999 -7.6394 2.4941 22 1 1.1809 -8.1301 2.2094 23 6 3.3217 -8.2227 2.1879 24 7 4.4417 -7.6246 2.5344 25 14 3.3764 -9.8559 1.2827 26 1 1.9915 -10.3157 1.0073 27 1 4.1056 -9.6867 0.0001 28 1 4.0756 -10.8630 2.1205 29 6 0.4973 -4.6447 2.5395 30 1 -0.5294 -4.6506 2.1735 31 6 1.5177 -4.6765 1.3797 32 1 -0.3633 0.0007 1.0276 33 1 -0.3633 0.8896 -0.5145 34 1 -0.3633 -0.8904 -0.5133 35 1 4.7963 -2.4003 0.0164 36 1 5.9470 0.1371 -1.2302 37 1 6.7281 -1.4626 -1.2233 38 1 5.2119 -1.2164 -2.1223 39 1 6.7139 -1.4580 1.2752 40 1 5.9325 0.1411 1.2683 41 1 5.1870 -1.2096 2.1561 42 1 2.9615 -3.0357 2.9827 43 1 1.9397 -1.6316 2.5425 44 1 2.3650 -3.7278 4.7882 45 1 0.8332 -3.1077 5.4683 46 1 1.4659 -5.7606 5.5557 47 1 -0.2223 -5.2084 5.3408 48 1 2.8853 -6.0012 3.4126 49 1 5.2956 -8.0323 2.3207 50 1 1.0613 -5.0926 0.4816 51 1 2.3992 -5.2531 1.6603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026286578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:20 Heat of formation + Delta-G solvation = 35.421507 kcal Electronic energy + Delta-G solvation = -32593.483852 eV Core-core repulsion = 28496.173064 eV Total energy + Delta-G solvation = -4097.310788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.90934 -40.05303 -38.27655 -36.15125 -34.92853 -34.56435 -33.46552 -31.11520 -30.96593 -29.20516 -28.78014 -28.27495 -27.36113 -25.43661 -24.83284 -23.31895 -23.01127 -22.77175 -19.98238 -19.77630 -18.96705 -18.56124 -17.79368 -17.52017 -17.26722 -16.36768 -15.76599 -15.70431 -15.16491 -15.01239 -14.42558 -14.23653 -13.78759 -13.65962 -13.58946 -13.34739 -13.31696 -13.28569 -12.98702 -12.75083 -12.63992 -12.37999 -12.31613 -11.86850 -11.63075 -11.48262 -11.46437 -11.32579 -11.08245 -10.94270 -10.89305 -10.77748 -10.55285 -10.29927 -10.24325 -10.14971 -9.98371 -9.92021 -9.76672 -9.69000 -9.38598 -9.06237 -8.32668 -7.02067 -5.87460 -3.16981 1.28649 1.86117 2.59691 2.78731 3.32056 3.39696 3.46719 3.47905 4.01625 4.12080 4.51974 4.55999 4.67748 4.73808 4.83435 4.84896 4.98463 5.04315 5.14381 5.28817 5.31572 5.44618 5.45337 5.47330 5.51302 5.56354 5.59112 5.60829 5.62235 5.67970 5.72406 5.83992 5.85003 5.91488 5.99878 6.01891 6.03675 6.04806 6.06384 6.15173 6.28751 6.37504 6.48478 6.53168 6.62527 6.80760 6.86137 7.16216 7.65104 7.83299 8.16359 8.30742 8.34119 9.43085 9.96500 10.31246 11.34216 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003825 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.405344 B = 7317.962448 C = 8444.904952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.052 3.948 3 N -0.360 5.360 4 O 0.096 5.904 5 C 0.024 3.976 6 C -0.018 4.018 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.235 4.235 10 C 0.611 3.389 11 O -0.533 6.533 12 N -0.608 5.608 13 C 0.110 3.890 14 C -0.098 4.098 15 H 0.076 0.924 16 C -0.112 4.112 17 C -0.135 4.135 18 C 0.179 3.821 19 H 0.064 0.936 20 N -0.709 5.709 21 C -0.247 4.247 22 H 0.073 0.927 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C -0.124 4.124 30 H 0.071 0.929 31 C 0.104 3.896 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.068 0.932 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 16.064 1.014 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 N -0.066 5.066 4 O 0.035 5.965 5 C -0.039 4.039 6 C -0.037 4.037 7 C -0.205 4.205 8 C -0.205 4.205 9 C -0.243 4.243 10 C 0.397 3.603 11 O -0.410 6.410 12 N -0.340 5.340 13 C -0.013 4.013 14 C -0.117 4.117 15 H 0.094 0.906 16 C -0.150 4.150 17 C -0.174 4.174 18 C 0.067 3.933 19 H 0.082 0.918 20 N -0.349 5.349 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.146 4.146 30 H 0.089 0.911 31 C -0.017 4.017 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.086 0.914 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.244 16.913 0.250 17.223 hybrid contribution 0.158 -1.418 -0.428 1.489 sum -3.086 15.495 -0.179 15.800 Atomic orbital electron populations 1.20197 0.85311 1.04150 1.03665 1.24703 0.98482 0.86643 1.01225 1.73596 0.89222 1.23388 1.20442 1.84476 1.21323 1.22658 1.68049 1.24651 0.96996 0.83452 0.98803 1.19938 0.86880 0.99016 0.97884 1.21869 1.00176 1.02239 0.96252 1.21871 1.00395 1.02213 0.95981 1.21989 0.92614 0.95451 1.14214 1.16361 0.77661 0.83436 0.82824 1.90825 1.51712 1.67989 1.30512 1.49187 1.66837 1.13384 1.04595 1.22725 0.99033 0.97893 0.81675 1.22588 0.96755 0.97231 0.95121 0.90586 1.22059 1.00969 0.96987 0.94948 1.22968 1.00369 0.95055 0.99048 1.21054 0.90099 0.91970 0.90175 0.91805 1.42477 1.01998 1.23067 1.67330 1.19312 0.92570 0.96918 1.28994 0.90911 1.24711 0.95339 0.98912 1.01325 1.69648 0.96733 1.39576 1.51703 0.86168 0.77450 0.83673 0.79208 1.20480 1.21783 1.21879 1.23258 0.98317 0.96061 0.97003 0.91101 1.23283 1.02032 0.78977 0.97391 0.89759 0.90079 0.89761 0.87622 0.91770 0.90874 0.91939 0.90782 0.91799 0.91885 0.90359 0.91740 0.91500 0.92455 0.91168 0.92262 0.78050 0.93430 0.91375 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.49 36.00 0.38 -0.44 16 2 C 0.05 0.71 7.59 -79.76 -0.61 0.11 16 3 N -0.36 -5.09 12.01 34.78 0.42 -4.67 16 4 O 0.10 1.30 11.06 18.66 0.21 1.50 16 5 C 0.02 0.33 6.06 -34.63 -0.21 0.12 16 6 C -0.02 -0.21 3.33 -91.78 -0.31 -0.51 16 7 C -0.15 -1.47 9.17 37.16 0.34 -1.13 16 8 C -0.15 -1.41 9.17 37.15 0.34 -1.07 16 9 C -0.24 -3.58 5.16 -102.89 -0.53 -4.11 16 10 C 0.61 10.92 7.41 -12.53 -0.09 10.83 16 11 O -0.53 -11.55 17.39 5.27 0.09 -11.46 16 12 N -0.61 -10.18 3.31 -169.83 -0.56 -10.74 16 13 C 0.11 1.52 6.47 -2.01 -0.01 1.51 16 14 C -0.10 -1.28 3.90 -88.35 -0.35 -1.63 16 15 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.11 -1.41 6.39 -25.95 -0.17 -1.58 16 17 C -0.14 -1.96 6.62 -24.55 -0.16 -2.12 16 18 C 0.18 3.13 3.62 -65.96 -0.24 2.89 16 19 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 20 N -0.71 -15.55 2.96 -51.52 -0.15 -15.70 16 21 C -0.25 -6.25 9.44 -15.06 -0.14 -6.39 16 22 H 0.07 1.82 7.74 -52.49 -0.41 1.42 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 24 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 25 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 C -0.12 -1.97 3.87 -88.56 -0.34 -2.31 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 C 0.10 1.95 6.24 -2.22 -0.01 1.94 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 1.43 7.70 -51.93 -0.40 1.03 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.11 7.28 -51.93 -0.38 0.73 16 43 H 0.06 0.81 7.43 -51.93 -0.39 0.42 16 44 H 0.07 0.89 7.20 -51.93 -0.37 0.51 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.38 9.03 7.65 -40.82 -0.31 8.72 16 49 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.07 1.41 7.88 -51.93 -0.41 1.00 16 51 H 0.13 2.94 5.23 -51.93 -0.27 2.67 16 LS Contribution 409.41 15.07 6.17 6.17 Total: -1.00 -29.93 409.41 -8.73 -38.66 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.40 Total: 9.21 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.20 Total: -4.17 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.43 Total: -56.47 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.30 Total: -9.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.93 -8.73 -38.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.081 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds