Wall clock time and date at job start Wed Apr 1 2020 04:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30018 * 127.33228 * 2 1 4 4 O 1.20663 * 112.29754 * 179.97438 * 3 2 1 5 5 C 1.33489 * 113.16067 * 359.72280 * 4 3 2 6 6 C 1.50696 * 126.83176 * 180.31078 * 5 4 3 7 7 C 1.52999 * 109.46735 * 300.16545 * 6 5 4 8 8 C 1.52995 * 109.47419 * 60.16537 * 6 5 4 9 9 C 1.37361 * 106.34015 * 0.44759 * 5 4 3 10 10 C 1.47404 * 128.56566 * 179.86033 * 9 5 4 11 11 O 1.21606 * 119.99505 * 269.42353 * 10 9 5 12 12 N 1.34771 * 119.99896 * 89.70387 * 10 9 5 13 13 C 1.48348 * 128.19886 * 359.67145 * 12 10 9 14 14 C 1.54916 * 104.07067 * 138.26527 * 13 12 10 15 15 H 1.09004 * 111.87231 * 264.27629 * 14 13 12 16 16 C 1.53554 * 109.66234 * 139.81468 * 14 13 12 17 17 C 1.53956 * 106.03148 * 228.77869 * 16 14 13 18 18 C 1.56139 * 104.97516 * 29.86687 * 17 16 14 19 19 H 1.08995 * 109.98139 * 211.62566 * 18 17 16 20 20 N 1.46505 * 111.32621 * 89.21927 * 18 17 16 21 21 C 1.36929 * 119.99880 * 139.07577 * 20 18 17 22 22 H 1.08000 * 120.00023 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00382 * 180.02562 * 21 20 18 24 24 N 1.31616 * 119.99573 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00332 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46972 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46850 * 119.99908 * 25 23 21 28 28 H 1.48495 * 109.47185 * 239.99943 * 25 23 21 29 29 C 1.53559 * 104.96462 * 330.08018 * 18 17 16 30 30 H 1.09001 * 111.65922 * 255.73544 * 29 18 17 31 31 C 1.48352 * 128.19295 * 180.02562 * 12 10 9 32 32 H 1.08992 * 109.47194 * 270.03834 * 1 2 3 33 33 H 1.08997 * 109.47185 * 30.04129 * 1 2 3 34 34 H 1.09005 * 109.46680 * 150.03939 * 1 2 3 35 35 H 1.09002 * 109.47139 * 180.17048 * 6 5 4 36 36 H 1.09000 * 109.47314 * 60.00048 * 7 6 5 37 37 H 1.09006 * 109.47172 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.47503 * 300.00156 * 7 6 5 39 39 H 1.09006 * 109.47200 * 180.02562 * 8 6 5 40 40 H 1.09002 * 109.47382 * 300.00362 * 8 6 5 41 41 H 1.09001 * 109.46812 * 60.00512 * 8 6 5 42 42 H 1.09000 * 110.47894 * 257.00532 * 13 12 10 43 43 H 1.09006 * 110.47021 * 19.60772 * 13 12 10 44 44 H 1.09005 * 110.14271 * 347.91849 * 16 14 13 45 45 H 1.08994 * 110.14316 * 109.57037 * 16 14 13 46 46 H 1.08998 * 110.35705 * 148.41455 * 17 16 14 47 47 H 1.08997 * 110.36089 * 270.60516 * 17 16 14 48 48 H 0.97000 * 120.00192 * 319.07722 * 20 18 17 49 49 H 0.97002 * 120.00185 * 179.97438 * 24 23 21 50 50 H 1.08996 * 110.47361 * 340.40271 * 31 12 10 51 51 H 1.09000 * 110.47190 * 102.87268 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0069 6 6 4.9712 -1.3244 0.0158 7 6 5.7722 -0.9388 -1.2294 8 6 5.7576 -0.9348 1.2690 9 6 2.3992 -1.1696 0.0005 10 6 2.0402 -2.5992 0.0007 11 8 1.8879 -3.1880 -1.0524 12 7 1.8751 -3.2523 1.1680 13 6 2.0146 -2.7191 2.5453 14 6 0.8233 -3.3439 3.3136 15 1 -0.0332 -2.6708 3.3515 16 6 1.2777 -3.7629 4.7192 17 6 0.7806 -5.2069 4.9139 18 6 0.7703 -5.8268 3.4809 19 1 -0.0288 -6.5636 3.3996 20 7 2.0599 -6.4420 3.1572 21 6 2.0999 -7.6394 2.4941 22 1 1.1809 -8.1301 2.2094 23 6 3.3217 -8.2227 2.1879 24 7 4.4417 -7.6246 2.5344 25 14 3.3764 -9.8559 1.2827 26 1 1.9915 -10.3157 1.0073 27 1 4.1056 -9.6867 0.0001 28 1 4.0756 -10.8630 2.1205 29 6 0.4973 -4.6447 2.5395 30 1 -0.5294 -4.6506 2.1735 31 6 1.5177 -4.6765 1.3797 32 1 -0.3633 0.0007 1.0276 33 1 -0.3633 0.8896 -0.5145 34 1 -0.3633 -0.8904 -0.5133 35 1 4.7963 -2.4003 0.0164 36 1 5.9470 0.1371 -1.2302 37 1 6.7281 -1.4626 -1.2233 38 1 5.2119 -1.2164 -2.1223 39 1 6.7139 -1.4580 1.2752 40 1 5.9325 0.1411 1.2683 41 1 5.1870 -1.2096 2.1561 42 1 2.9615 -3.0357 2.9827 43 1 1.9397 -1.6316 2.5425 44 1 2.3650 -3.7278 4.7882 45 1 0.8332 -3.1077 5.4683 46 1 1.4659 -5.7606 5.5557 47 1 -0.2223 -5.2084 5.3408 48 1 2.8853 -6.0012 3.4126 49 1 5.2956 -8.0323 2.3207 50 1 1.0613 -5.0926 0.4816 51 1 2.3992 -5.2531 1.6603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026286578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:19 Heat of formation + Delta-G solvation = 19.536304 kcal Electronic energy + Delta-G solvation = -32594.172686 eV Core-core repulsion = 28496.173064 eV Total energy + Delta-G solvation = -4097.999622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.99483 -41.40864 -39.69074 -37.10390 -36.48095 -35.65256 -35.06181 -32.69280 -32.19082 -30.48566 -29.81425 -29.69221 -28.15570 -26.83262 -26.20208 -25.05042 -24.02849 -23.94855 -21.18739 -20.96127 -20.12503 -19.90258 -19.37243 -18.90384 -18.49929 -17.60939 -17.09770 -16.87594 -16.62690 -16.42639 -15.95082 -15.30164 -15.28231 -15.03723 -14.86698 -14.43385 -14.37210 -14.17495 -14.12367 -14.03254 -13.84325 -13.65625 -13.24397 -13.11229 -13.05525 -12.86717 -12.63925 -12.39974 -12.39121 -12.31627 -12.23329 -12.13041 -11.95342 -11.90084 -11.55564 -11.42252 -11.36936 -11.33789 -11.20697 -10.97603 -10.93653 -10.51729 -9.83660 -8.87129 -7.92630 -5.17915 0.18589 0.77171 1.23173 1.46015 1.49236 1.55795 1.60415 2.05941 2.57024 2.98154 3.08097 3.36398 3.42092 3.56271 3.66194 3.76453 3.85932 3.94036 3.98533 4.10160 4.16002 4.33700 4.36262 4.38062 4.48047 4.51243 4.54189 4.58329 4.64890 4.66440 4.71946 4.78553 4.80869 4.81998 4.85058 4.87163 5.02081 5.02450 5.05046 5.10191 5.20081 5.21391 5.23673 5.26589 5.42910 5.47839 5.53046 5.62603 5.64727 6.30692 6.46959 6.92379 7.08247 7.38465 8.13501 8.35953 9.29920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003825 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.405344 B = 7317.962448 C = 8444.904952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.057 3.943 3 N -0.368 5.368 4 O 0.100 5.900 5 C 0.040 3.960 6 C -0.021 4.021 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.263 4.263 10 C 0.613 3.387 11 O -0.583 6.583 12 N -0.605 5.605 13 C 0.110 3.890 14 C -0.085 4.085 15 H 0.107 0.893 16 C -0.105 4.105 17 C -0.125 4.125 18 C 0.168 3.832 19 H 0.057 0.943 20 N -0.715 5.715 21 C -0.233 4.233 22 H 0.073 0.927 23 C -0.064 4.064 24 N -0.961 5.961 25 Si 0.954 3.046 26 H -0.269 1.269 27 H -0.302 1.302 28 H -0.294 1.294 29 C -0.115 4.115 30 H 0.083 0.917 31 C 0.108 3.892 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.376 0.624 49 H 0.249 0.751 50 H 0.037 0.963 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 18.435 2.590 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 N -0.076 5.076 4 O 0.040 5.960 5 C -0.024 4.024 6 C -0.040 4.040 7 C -0.202 4.202 8 C -0.200 4.200 9 C -0.271 4.271 10 C 0.401 3.599 11 O -0.464 6.464 12 N -0.335 5.335 13 C -0.012 4.012 14 C -0.104 4.104 15 H 0.125 0.875 16 C -0.143 4.143 17 C -0.164 4.164 18 C 0.058 3.942 19 H 0.075 0.925 20 N -0.354 5.354 21 C -0.365 4.365 22 H 0.091 0.909 23 C -0.257 4.257 24 N -0.612 5.612 25 Si 0.785 3.215 26 H -0.194 1.194 27 H -0.230 1.230 28 H -0.221 1.221 29 C -0.137 4.137 30 H 0.102 0.898 31 C -0.014 4.014 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.209 0.791 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.558 19.309 1.871 19.928 hybrid contribution 0.501 -2.139 -0.937 2.388 sum -4.057 17.170 0.933 17.668 Atomic orbital electron populations 1.20348 0.83260 1.04547 1.05210 1.25118 0.99723 0.85663 1.00053 1.73588 0.89341 1.23408 1.21266 1.84476 1.21294 1.22212 1.67993 1.24920 0.97136 0.83495 0.96801 1.20025 0.86738 0.97284 0.99971 1.21875 1.00291 1.03491 0.94557 1.21866 1.00362 1.03382 0.94346 1.21781 0.94005 0.94267 1.17008 1.16690 0.76607 0.84395 0.82238 1.90786 1.53963 1.69388 1.32295 1.49221 1.65983 1.12534 1.05765 1.22890 0.99343 0.99168 0.79756 1.22608 0.97272 0.95864 0.94639 0.87491 1.22040 1.00717 0.96201 0.95303 1.22858 1.01710 0.95678 0.96161 1.21333 0.87692 0.92383 0.92746 0.92480 1.42527 1.03404 1.22290 1.67132 1.19589 0.92224 0.97436 1.27202 0.90887 1.25288 0.95459 1.01662 1.03287 1.69763 0.96787 1.40788 1.53827 0.85350 0.77528 0.80992 0.77618 1.19361 1.23023 1.22121 1.23137 0.97879 0.97044 0.95604 0.89823 1.22949 1.01202 0.80008 0.97241 0.87530 0.88371 0.90629 0.90297 0.90115 0.89312 0.93461 0.89647 0.90165 0.92428 0.90926 0.89554 0.92368 0.89007 0.92766 0.89512 0.79112 0.94231 0.94423 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.49 71.23 0.75 -0.72 16 2 C 0.06 1.48 7.59 45.16 0.34 1.82 16 3 N -0.37 -9.70 12.01 -44.77 -0.54 -10.24 16 4 O 0.10 2.52 11.06 77.01 0.85 3.37 16 5 C 0.04 1.06 6.06 25.48 0.15 1.21 16 6 C -0.02 -0.47 3.33 -11.54 -0.04 -0.51 16 7 C -0.14 -2.77 9.17 71.98 0.66 -2.11 16 8 C -0.14 -2.53 9.17 71.98 0.66 -1.87 16 9 C -0.26 -7.92 5.16 -18.74 -0.10 -8.02 16 10 C 0.61 22.46 7.41 86.66 0.64 23.10 16 11 O -0.58 -26.60 17.39 -4.05 -0.07 -26.67 16 12 N -0.60 -20.43 3.31 -809.49 -2.68 -23.11 16 13 C 0.11 2.87 6.47 86.68 0.56 3.43 16 14 C -0.08 -1.96 3.90 -9.33 -0.04 -1.99 16 15 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 16 C -0.10 -2.28 6.39 31.10 0.20 -2.08 16 17 C -0.13 -3.30 6.62 32.01 0.21 -3.09 16 18 C 0.17 5.75 3.62 46.27 0.17 5.91 16 19 H 0.06 2.01 7.91 -2.39 -0.02 1.99 16 20 N -0.71 -31.94 2.96 -316.91 -0.94 -32.88 16 21 C -0.23 -12.02 9.44 84.04 0.79 -11.22 16 22 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 23 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 24 N -0.96 -55.88 13.06 21.65 0.28 -55.60 16 25 Si 0.95 45.54 29.55 68.60 2.03 47.56 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 29 C -0.11 -3.49 3.87 -9.46 -0.04 -3.53 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 C 0.11 4.19 6.24 86.54 0.54 4.73 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 2.25 7.70 -2.39 -0.02 2.23 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 2.00 7.28 -2.39 -0.02 1.98 16 43 H 0.09 1.91 7.43 -2.38 -0.02 1.89 16 44 H 0.06 1.40 7.20 -2.38 -0.02 1.38 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 47 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 48 H 0.38 18.16 7.65 -92.71 -0.71 17.45 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 51 H 0.10 4.57 5.23 -2.39 -0.01 4.56 16 Total: -1.00 -68.26 409.41 5.10 -63.16 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.23 Total: 32.39 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.94 Total: 2.02 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -3.87 Total: -121.82 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.78 Total: -23.30 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -68.26 5.10 -63.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026286578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.692 kcal (2) G-P(sol) polarization free energy of solvation -68.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds