Wall clock time and date at job start Wed Apr 1 2020 04:38:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30018 * 127.33228 * 2 1
4 4 O 1.20663 * 112.29754 * 179.97438 * 3 2 1
5 5 C 1.33489 * 113.16067 * 359.72280 * 4 3 2
6 6 C 1.50696 * 126.83176 * 180.31078 * 5 4 3
7 7 C 1.52999 * 109.46735 * 300.16545 * 6 5 4
8 8 C 1.52995 * 109.47419 * 60.16537 * 6 5 4
9 9 C 1.37361 * 106.34015 * 0.44759 * 5 4 3
10 10 C 1.47404 * 128.56566 * 179.86033 * 9 5 4
11 11 O 1.21606 * 119.99505 * 269.42353 * 10 9 5
12 12 N 1.34771 * 119.99896 * 89.70387 * 10 9 5
13 13 C 1.48348 * 128.19886 * 359.67145 * 12 10 9
14 14 C 1.54916 * 104.07067 * 138.26527 * 13 12 10
15 15 H 1.09004 * 111.87231 * 264.27629 * 14 13 12
16 16 C 1.53554 * 109.66234 * 139.81468 * 14 13 12
17 17 C 1.53956 * 106.03148 * 228.77869 * 16 14 13
18 18 C 1.56139 * 104.97516 * 29.86687 * 17 16 14
19 19 H 1.08995 * 109.98139 * 211.62566 * 18 17 16
20 20 N 1.46505 * 111.32621 * 89.21927 * 18 17 16
21 21 C 1.36929 * 119.99880 * 139.07577 * 20 18 17
22 22 H 1.08000 * 120.00023 * 0.02562 * 21 20 18
23 23 C 1.38813 * 120.00382 * 180.02562 * 21 20 18
24 24 N 1.31616 * 119.99573 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 120.00332 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.46972 * 0.02562 * 25 23 21
27 27 H 1.48507 * 109.46850 * 119.99908 * 25 23 21
28 28 H 1.48495 * 109.47185 * 239.99943 * 25 23 21
29 29 C 1.53559 * 104.96462 * 330.08018 * 18 17 16
30 30 H 1.09001 * 111.65922 * 255.73544 * 29 18 17
31 31 C 1.48352 * 128.19295 * 180.02562 * 12 10 9
32 32 H 1.08992 * 109.47194 * 270.03834 * 1 2 3
33 33 H 1.08997 * 109.47185 * 30.04129 * 1 2 3
34 34 H 1.09005 * 109.46680 * 150.03939 * 1 2 3
35 35 H 1.09002 * 109.47139 * 180.17048 * 6 5 4
36 36 H 1.09000 * 109.47314 * 60.00048 * 7 6 5
37 37 H 1.09006 * 109.47172 * 180.02562 * 7 6 5
38 38 H 1.09000 * 109.47503 * 300.00156 * 7 6 5
39 39 H 1.09006 * 109.47200 * 180.02562 * 8 6 5
40 40 H 1.09002 * 109.47382 * 300.00362 * 8 6 5
41 41 H 1.09001 * 109.46812 * 60.00512 * 8 6 5
42 42 H 1.09000 * 110.47894 * 257.00532 * 13 12 10
43 43 H 1.09006 * 110.47021 * 19.60772 * 13 12 10
44 44 H 1.09005 * 110.14271 * 347.91849 * 16 14 13
45 45 H 1.08994 * 110.14316 * 109.57037 * 16 14 13
46 46 H 1.08998 * 110.35705 * 148.41455 * 17 16 14
47 47 H 1.08997 * 110.36089 * 270.60516 * 17 16 14
48 48 H 0.97000 * 120.00192 * 319.07722 * 20 18 17
49 49 H 0.97002 * 120.00185 * 179.97438 * 24 23 21
50 50 H 1.08996 * 110.47361 * 340.40271 * 31 12 10
51 51 H 1.09000 * 110.47190 * 102.87268 * 31 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2954 1.0338 0.0000
4 8 3.4608 0.7208 0.0005
5 6 3.6495 -0.6007 0.0069
6 6 4.9712 -1.3244 0.0158
7 6 5.7722 -0.9388 -1.2294
8 6 5.7576 -0.9348 1.2690
9 6 2.3992 -1.1696 0.0005
10 6 2.0402 -2.5992 0.0007
11 8 1.8879 -3.1880 -1.0524
12 7 1.8751 -3.2523 1.1680
13 6 2.0146 -2.7191 2.5453
14 6 0.8233 -3.3439 3.3136
15 1 -0.0332 -2.6708 3.3515
16 6 1.2777 -3.7629 4.7192
17 6 0.7806 -5.2069 4.9139
18 6 0.7703 -5.8268 3.4809
19 1 -0.0288 -6.5636 3.3996
20 7 2.0599 -6.4420 3.1572
21 6 2.0999 -7.6394 2.4941
22 1 1.1809 -8.1301 2.2094
23 6 3.3217 -8.2227 2.1879
24 7 4.4417 -7.6246 2.5344
25 14 3.3764 -9.8559 1.2827
26 1 1.9915 -10.3157 1.0073
27 1 4.1056 -9.6867 0.0001
28 1 4.0756 -10.8630 2.1205
29 6 0.4973 -4.6447 2.5395
30 1 -0.5294 -4.6506 2.1735
31 6 1.5177 -4.6765 1.3797
32 1 -0.3633 0.0007 1.0276
33 1 -0.3633 0.8896 -0.5145
34 1 -0.3633 -0.8904 -0.5133
35 1 4.7963 -2.4003 0.0164
36 1 5.9470 0.1371 -1.2302
37 1 6.7281 -1.4626 -1.2233
38 1 5.2119 -1.2164 -2.1223
39 1 6.7139 -1.4580 1.2752
40 1 5.9325 0.1411 1.2683
41 1 5.1870 -1.2096 2.1561
42 1 2.9615 -3.0357 2.9827
43 1 1.9397 -1.6316 2.5425
44 1 2.3650 -3.7278 4.7882
45 1 0.8332 -3.1077 5.4683
46 1 1.4659 -5.7606 5.5557
47 1 -0.2223 -5.2084 5.3408
48 1 2.8853 -6.0012 3.4126
49 1 5.2956 -8.0323 2.3207
50 1 1.0613 -5.0926 0.4816
51 1 2.3992 -5.2531 1.6603
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001026286578.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:19
Heat of formation + Delta-G solvation = 19.536304 kcal
Electronic energy + Delta-G solvation = -32594.172686 eV
Core-core repulsion = 28496.173064 eV
Total energy + Delta-G solvation = -4097.999622 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-45.99483 -41.40864 -39.69074 -37.10390 -36.48095 -35.65256 -35.06181 -32.69280
-32.19082 -30.48566 -29.81425 -29.69221 -28.15570 -26.83262 -26.20208 -25.05042
-24.02849 -23.94855 -21.18739 -20.96127 -20.12503 -19.90258 -19.37243 -18.90384
-18.49929 -17.60939 -17.09770 -16.87594 -16.62690 -16.42639 -15.95082 -15.30164
-15.28231 -15.03723 -14.86698 -14.43385 -14.37210 -14.17495 -14.12367 -14.03254
-13.84325 -13.65625 -13.24397 -13.11229 -13.05525 -12.86717 -12.63925 -12.39974
-12.39121 -12.31627 -12.23329 -12.13041 -11.95342 -11.90084 -11.55564 -11.42252
-11.36936 -11.33789 -11.20697 -10.97603 -10.93653 -10.51729 -9.83660 -8.87129
-7.92630 -5.17915 0.18589 0.77171 1.23173 1.46015 1.49236 1.55795
1.60415 2.05941 2.57024 2.98154 3.08097 3.36398 3.42092 3.56271
3.66194 3.76453 3.85932 3.94036 3.98533 4.10160 4.16002 4.33700
4.36262 4.38062 4.48047 4.51243 4.54189 4.58329 4.64890 4.66440
4.71946 4.78553 4.80869 4.81998 4.85058 4.87163 5.02081 5.02450
5.05046 5.10191 5.20081 5.21391 5.23673 5.26589 5.42910 5.47839
5.53046 5.62603 5.64727 6.30692 6.46959 6.92379 7.08247 7.38465
8.13501 8.35953 9.29920
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010794 B = 0.003825 C = 0.003315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2593.405344 B = 7317.962448 C = 8444.904952
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.057 3.943
3 N -0.368 5.368
4 O 0.100 5.900
5 C 0.040 3.960
6 C -0.021 4.021
7 C -0.145 4.145
8 C -0.142 4.142
9 C -0.263 4.263
10 C 0.613 3.387
11 O -0.583 6.583
12 N -0.605 5.605
13 C 0.110 3.890
14 C -0.085 4.085
15 H 0.107 0.893
16 C -0.105 4.105
17 C -0.125 4.125
18 C 0.168 3.832
19 H 0.057 0.943
20 N -0.715 5.715
21 C -0.233 4.233
22 H 0.073 0.927
23 C -0.064 4.064
24 N -0.961 5.961
25 Si 0.954 3.046
26 H -0.269 1.269
27 H -0.302 1.302
28 H -0.294 1.294
29 C -0.115 4.115
30 H 0.083 0.917
31 C 0.108 3.892
32 H 0.106 0.894
33 H 0.098 0.902
34 H 0.075 0.925
35 H 0.079 0.921
36 H 0.080 0.920
37 H 0.088 0.912
38 H 0.046 0.954
39 H 0.085 0.915
40 H 0.079 0.921
41 H 0.057 0.943
42 H 0.073 0.927
43 H 0.086 0.914
44 H 0.058 0.942
45 H 0.091 0.909
46 H 0.053 0.947
47 H 0.086 0.914
48 H 0.376 0.624
49 H 0.249 0.751
50 H 0.037 0.963
51 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.251 18.435 2.590 19.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.106 4.106
3 N -0.076 5.076
4 O 0.040 5.960
5 C -0.024 4.024
6 C -0.040 4.040
7 C -0.202 4.202
8 C -0.200 4.200
9 C -0.271 4.271
10 C 0.401 3.599
11 O -0.464 6.464
12 N -0.335 5.335
13 C -0.012 4.012
14 C -0.104 4.104
15 H 0.125 0.875
16 C -0.143 4.143
17 C -0.164 4.164
18 C 0.058 3.942
19 H 0.075 0.925
20 N -0.354 5.354
21 C -0.365 4.365
22 H 0.091 0.909
23 C -0.257 4.257
24 N -0.612 5.612
25 Si 0.785 3.215
26 H -0.194 1.194
27 H -0.230 1.230
28 H -0.221 1.221
29 C -0.137 4.137
30 H 0.102 0.898
31 C -0.014 4.014
32 H 0.125 0.875
33 H 0.116 0.884
34 H 0.094 0.906
35 H 0.097 0.903
36 H 0.099 0.901
37 H 0.107 0.893
38 H 0.065 0.935
39 H 0.104 0.896
40 H 0.098 0.902
41 H 0.076 0.924
42 H 0.091 0.909
43 H 0.104 0.896
44 H 0.076 0.924
45 H 0.110 0.890
46 H 0.072 0.928
47 H 0.105 0.895
48 H 0.209 0.791
49 H 0.058 0.942
50 H 0.056 0.944
51 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -4.558 19.309 1.871 19.928
hybrid contribution 0.501 -2.139 -0.937 2.388
sum -4.057 17.170 0.933 17.668
Atomic orbital electron populations
1.20348 0.83260 1.04547 1.05210 1.25118 0.99723 0.85663 1.00053
1.73588 0.89341 1.23408 1.21266 1.84476 1.21294 1.22212 1.67993
1.24920 0.97136 0.83495 0.96801 1.20025 0.86738 0.97284 0.99971
1.21875 1.00291 1.03491 0.94557 1.21866 1.00362 1.03382 0.94346
1.21781 0.94005 0.94267 1.17008 1.16690 0.76607 0.84395 0.82238
1.90786 1.53963 1.69388 1.32295 1.49221 1.65983 1.12534 1.05765
1.22890 0.99343 0.99168 0.79756 1.22608 0.97272 0.95864 0.94639
0.87491 1.22040 1.00717 0.96201 0.95303 1.22858 1.01710 0.95678
0.96161 1.21333 0.87692 0.92383 0.92746 0.92480 1.42527 1.03404
1.22290 1.67132 1.19589 0.92224 0.97436 1.27202 0.90887 1.25288
0.95459 1.01662 1.03287 1.69763 0.96787 1.40788 1.53827 0.85350
0.77528 0.80992 0.77618 1.19361 1.23023 1.22121 1.23137 0.97879
0.97044 0.95604 0.89823 1.22949 1.01202 0.80008 0.97241 0.87530
0.88371 0.90629 0.90297 0.90115 0.89312 0.93461 0.89647 0.90165
0.92428 0.90926 0.89554 0.92368 0.89007 0.92766 0.89512 0.79112
0.94231 0.94423 0.88420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.47 10.49 71.23 0.75 -0.72 16
2 C 0.06 1.48 7.59 45.16 0.34 1.82 16
3 N -0.37 -9.70 12.01 -44.77 -0.54 -10.24 16
4 O 0.10 2.52 11.06 77.01 0.85 3.37 16
5 C 0.04 1.06 6.06 25.48 0.15 1.21 16
6 C -0.02 -0.47 3.33 -11.54 -0.04 -0.51 16
7 C -0.14 -2.77 9.17 71.98 0.66 -2.11 16
8 C -0.14 -2.53 9.17 71.98 0.66 -1.87 16
9 C -0.26 -7.92 5.16 -18.74 -0.10 -8.02 16
10 C 0.61 22.46 7.41 86.66 0.64 23.10 16
11 O -0.58 -26.60 17.39 -4.05 -0.07 -26.67 16
12 N -0.60 -20.43 3.31 -809.49 -2.68 -23.11 16
13 C 0.11 2.87 6.47 86.68 0.56 3.43 16
14 C -0.08 -1.96 3.90 -9.33 -0.04 -1.99 16
15 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16
16 C -0.10 -2.28 6.39 31.10 0.20 -2.08 16
17 C -0.13 -3.30 6.62 32.01 0.21 -3.09 16
18 C 0.17 5.75 3.62 46.27 0.17 5.91 16
19 H 0.06 2.01 7.91 -2.39 -0.02 1.99 16
20 N -0.71 -31.94 2.96 -316.91 -0.94 -32.88 16
21 C -0.23 -12.02 9.44 84.04 0.79 -11.22 16
22 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16
23 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16
24 N -0.96 -55.88 13.06 21.65 0.28 -55.60 16
25 Si 0.95 45.54 29.55 68.60 2.03 47.56 16
26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
27 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16
28 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16
29 C -0.11 -3.49 3.87 -9.46 -0.04 -3.53 16
30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16
31 C 0.11 4.19 6.24 86.54 0.54 4.73 16
32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16
35 H 0.08 2.25 7.70 -2.39 -0.02 2.23 16
36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16
38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16
40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
42 H 0.07 2.00 7.28 -2.39 -0.02 1.98 16
43 H 0.09 1.91 7.43 -2.38 -0.02 1.89 16
44 H 0.06 1.40 7.20 -2.38 -0.02 1.38 16
45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
46 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16
47 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16
48 H 0.38 18.16 7.65 -92.71 -0.71 17.45 16
49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16
50 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16
51 H 0.10 4.57 5.23 -2.39 -0.01 4.56 16
Total: -1.00 -68.26 409.41 5.10 -63.16
By element:
Atomic # 1 Polarization: 32.16 SS G_CDS: 0.23 Total: 32.39 kcal
Atomic # 6 Polarization: -3.92 SS G_CDS: 5.94 Total: 2.02 kcal
Atomic # 7 Polarization: -117.95 SS G_CDS: -3.87 Total: -121.82 kcal
Atomic # 8 Polarization: -24.08 SS G_CDS: 0.78 Total: -23.30 kcal
Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal
Total: -68.26 5.10 -63.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001026286578.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.692 kcal
(2) G-P(sol) polarization free energy of solvation -68.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.435 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds