Wall clock time and date at job start Wed Apr 1 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30175 * 126.80671 * 2 1 4 4 O 1.20919 * 111.61086 * 180.25202 * 3 2 1 5 5 C 1.34043 * 111.56166 * 359.74452 * 4 3 2 6 6 C 1.50697 * 126.77140 * 180.02562 * 5 4 3 7 7 C 1.35443 * 106.44762 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00670 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47454 * 89.99886 * 8 7 5 10 10 C 1.50693 * 109.47528 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99893 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00210 * 180.02562 * 10 9 8 13 13 C 1.49624 * 126.07138 * 0.02562 * 12 10 9 14 14 C 1.51517 * 102.49325 * 154.37560 * 13 12 10 15 15 H 1.09003 * 111.54555 * 287.98602 * 14 13 12 16 16 C 1.51759 * 123.33180 * 151.64667 * 14 13 12 17 17 C 1.56337 * 101.72344 * 207.96565 * 16 14 13 18 18 C 1.56006 * 105.83219 * 25.45591 * 17 16 14 19 19 H 1.09005 * 110.52157 * 248.29461 * 18 17 16 20 20 N 1.46500 * 110.52391 * 125.54505 * 18 17 16 21 21 C 1.36943 * 119.99605 * 86.45642 * 20 18 17 22 22 H 1.08000 * 120.00112 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99502 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99920 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00223 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47525 * 90.00266 * 25 23 21 27 27 H 1.48507 * 109.47344 * 210.00275 * 25 23 21 28 28 H 1.48501 * 109.47323 * 330.00272 * 25 23 21 29 29 C 1.49704 * 103.98878 * 6.91628 * 18 17 16 30 30 H 1.09005 * 108.54480 * 77.98516 * 29 18 17 31 31 C 1.49290 * 126.07320 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.46766 * 270.16556 * 1 2 3 33 33 H 1.09003 * 109.47121 * 30.16601 * 1 2 3 34 34 H 1.08995 * 109.46989 * 150.16772 * 1 2 3 35 35 H 1.09002 * 109.47378 * 269.99835 * 6 5 4 36 36 H 1.08994 * 109.47713 * 30.00007 * 6 5 4 37 37 H 1.09001 * 109.47302 * 150.00306 * 6 5 4 38 38 H 1.09008 * 109.46949 * 330.00297 * 8 7 5 39 39 H 1.09000 * 109.47513 * 210.00288 * 8 7 5 40 40 H 1.08999 * 109.46686 * 59.99978 * 9 8 7 41 41 H 1.09006 * 109.46781 * 300.00420 * 9 8 7 42 42 H 1.09001 * 110.79904 * 36.12205 * 13 12 10 43 43 H 1.08995 * 110.79968 * 272.62704 * 13 12 10 44 44 H 1.09001 * 111.02482 * 89.85356 * 16 14 13 45 45 H 1.09002 * 110.98473 * 326.05719 * 16 14 13 46 46 H 1.09002 * 110.19090 * 266.34156 * 17 16 14 47 47 H 1.08994 * 110.19065 * 144.56916 * 17 16 14 48 48 H 0.96996 * 120.00207 * 266.44996 * 20 18 17 49 49 H 0.97001 * 120.00174 * 179.97438 * 24 23 21 50 50 H 1.08997 * 110.39395 * 54.78817 * 31 12 10 51 51 H 1.09001 * 110.39220 * 292.39177 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6024 -0.6068 -0.0034 6 6 4.9021 -1.3695 -0.0077 7 6 2.3540 -1.1320 0.0027 8 6 1.9590 -2.5864 0.0062 9 6 1.8318 -3.0769 1.4499 10 6 1.4375 -4.5313 1.4534 11 8 1.2738 -5.1178 0.4045 12 7 1.2656 -5.1802 2.6222 13 6 1.4292 -4.5925 3.9884 14 6 0.5309 -5.4726 4.8335 15 1 -0.5229 -5.2765 4.6354 16 6 0.7703 -5.7360 6.3087 17 6 0.1228 -7.1476 6.4886 18 6 0.1769 -7.8228 5.0833 19 1 -0.8271 -7.9323 4.6731 20 7 0.8450 -9.1241 5.1640 21 6 0.1256 -10.2444 5.4844 22 1 -0.9342 -10.1685 5.6779 23 6 0.7588 -11.4773 5.5615 24 7 0.0675 -12.5540 5.8699 25 14 2.5920 -11.6083 5.2275 26 1 3.3408 -11.4231 6.4963 27 1 2.8979 -12.9474 4.6630 28 1 2.9947 -10.5585 4.2574 29 6 0.9813 -6.8702 4.2548 30 1 2.0354 -7.0037 4.4982 31 6 0.8783 -6.6129 2.7835 32 1 -0.3633 0.0030 1.0277 33 1 -0.3633 0.8885 -0.5164 34 1 -0.3633 -0.8915 -0.5112 35 1 5.2112 -1.5551 -1.0364 36 1 5.6681 -0.7851 0.5019 37 1 4.7673 -2.3202 0.5082 38 1 2.7205 -3.1709 -0.5103 39 1 1.0027 -2.7045 -0.5033 40 1 1.0704 -2.4924 1.9663 41 1 2.7882 -2.9588 1.9593 42 1 1.0870 -3.5578 4.0081 43 1 2.4651 -4.6652 4.3196 44 1 0.2643 -4.9934 6.9257 45 1 1.8368 -5.7649 6.5321 46 1 -0.9113 -7.0479 6.8186 47 1 0.6924 -7.7336 7.2097 48 1 1.7969 -9.1921 4.9905 49 1 0.5098 -13.4156 5.9233 50 1 1.5671 -7.2565 2.2363 51 1 -0.1442 -6.7709 2.4406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026417395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:22 Heat of formation + Delta-G solvation = 22.447837 kcal Electronic energy + Delta-G solvation = -30498.022780 eV Core-core repulsion = 26400.149411 eV Total energy + Delta-G solvation = -4097.873369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.91037 -41.71609 -39.97554 -37.00419 -36.73731 -35.07892 -34.73551 -33.06735 -32.86826 -30.91569 -29.96611 -29.59777 -28.58561 -27.22215 -26.02467 -24.58818 -23.93325 -22.28109 -21.49673 -21.02775 -20.58806 -20.11642 -19.53018 -18.66838 -18.11863 -17.62769 -17.51727 -16.85836 -16.52978 -16.01016 -15.84366 -15.57440 -15.04881 -15.00061 -14.78124 -14.49357 -14.32962 -14.28548 -13.98289 -13.88974 -13.81059 -13.53131 -13.48812 -13.42493 -13.23476 -13.18272 -13.05086 -12.86123 -12.59933 -12.33119 -12.25386 -12.24908 -12.11366 -11.83720 -11.73474 -11.58151 -11.39572 -11.03455 -11.00484 -10.90213 -10.74952 -10.05374 -9.72431 -9.29325 -8.01584 -5.34473 0.49727 1.18891 1.36917 1.40342 1.47452 1.64078 1.85086 2.22561 2.48426 2.96400 3.22792 3.30837 3.48797 3.52979 3.57241 3.83167 3.90106 3.93992 4.01924 4.19130 4.25152 4.30420 4.32869 4.41179 4.43954 4.50067 4.56442 4.57847 4.65219 4.69741 4.70077 4.70994 4.71746 4.78269 4.82637 4.93498 4.93764 4.95871 5.01779 5.06077 5.09020 5.17653 5.19737 5.24948 5.35378 5.36629 5.53404 5.54651 5.79898 6.23164 6.52192 7.08869 7.13888 7.32182 7.85667 8.03705 9.20026 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.002068 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.418185 B =13539.063065 C =14004.303711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.401 5.401 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.077 4.077 7 C -0.208 4.208 8 C -0.018 4.018 9 C -0.117 4.117 10 C 0.524 3.476 11 O -0.590 6.590 12 N -0.624 5.624 13 C 0.120 3.880 14 C -0.105 4.105 15 H 0.090 0.910 16 C -0.085 4.085 17 C -0.139 4.139 18 C 0.192 3.808 19 H 0.042 0.958 20 N -0.749 5.749 21 C -0.225 4.225 22 H 0.056 0.944 23 C -0.067 4.067 24 N -0.985 5.985 25 Si 0.954 3.046 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.254 1.254 29 C -0.127 4.127 30 H 0.075 0.925 31 C 0.133 3.867 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.364 0.636 49 H 0.256 0.744 50 H 0.052 0.948 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.319 30.032 -7.588 32.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 N -0.110 5.110 4 O 0.019 5.981 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.212 4.212 8 C -0.056 4.056 9 C -0.156 4.156 10 C 0.315 3.685 11 O -0.470 6.470 12 N -0.358 5.358 13 C 0.000 4.000 14 C -0.125 4.125 15 H 0.109 0.891 16 C -0.123 4.123 17 C -0.180 4.180 18 C 0.084 3.916 19 H 0.060 0.940 20 N -0.392 5.392 21 C -0.356 4.356 22 H 0.074 0.926 23 C -0.258 4.258 24 N -0.636 5.636 25 Si 0.782 3.218 26 H -0.202 1.202 27 H -0.227 1.227 28 H -0.179 1.179 29 C -0.147 4.147 30 H 0.093 0.907 31 C 0.010 3.990 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.198 0.802 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.877 30.978 -8.176 32.993 hybrid contribution 0.476 -1.981 -0.240 2.051 sum 8.353 28.997 -8.416 31.328 Atomic orbital electron populations 1.20304 0.84558 1.04306 1.04492 1.23935 1.00048 0.88488 1.01601 1.73847 0.89867 1.25077 1.22225 1.84767 1.21391 1.23614 1.68288 1.24905 0.99472 0.83143 1.00968 1.20574 0.88743 0.98789 1.05339 1.20971 0.91739 0.97241 1.11244 1.19493 1.03108 0.87126 0.95880 1.21599 1.05470 0.89550 0.99018 1.20989 0.76040 0.90022 0.81486 1.90713 1.53681 1.70281 1.32358 1.49953 1.68188 1.10791 1.06899 1.22011 1.00575 0.98274 0.79150 1.22599 1.00703 0.93229 0.95952 0.89148 1.21822 1.01622 0.95312 0.93549 1.23569 1.00652 0.96263 0.97500 1.20166 0.94638 0.83010 0.93833 0.94007 1.42871 1.07519 1.03899 1.84874 1.19019 0.93092 0.86328 1.37164 0.92570 1.25499 1.02449 0.95142 1.02724 1.69886 1.37085 0.99094 1.57506 0.85420 0.80983 0.76928 0.78496 1.20216 1.22699 1.17883 1.21862 1.01502 0.97751 0.93573 0.90670 1.20788 0.99810 0.82393 0.95969 0.88707 0.90495 0.89070 0.88244 0.88240 0.87854 0.90048 0.90584 0.86836 0.86484 0.86934 0.89002 0.89098 0.90340 0.92147 0.92890 0.80201 0.93482 0.92911 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.39 71.24 0.74 -0.20 16 2 C 0.02 0.31 7.33 43.58 0.32 0.63 16 3 N -0.40 -8.44 12.07 -49.55 -0.60 -9.04 16 4 O 0.08 1.51 11.20 71.61 0.80 2.31 16 5 C -0.02 -0.29 7.49 25.04 0.19 -0.10 16 6 C -0.08 -0.46 10.25 71.23 0.73 0.27 16 7 C -0.21 -3.07 5.58 -19.74 -0.11 -3.18 16 8 C -0.02 -0.25 4.76 29.85 0.14 -0.11 16 9 C -0.12 -1.42 4.74 29.85 0.14 -1.28 16 10 C 0.52 11.30 7.88 87.65 0.69 11.99 16 11 O -0.59 -18.30 16.35 -3.04 -0.05 -18.35 16 12 N -0.62 -12.94 3.43 -815.11 -2.79 -15.73 16 13 C 0.12 1.57 6.48 85.29 0.55 2.12 16 14 C -0.11 -1.86 3.14 -9.98 -0.03 -1.89 16 15 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 16 C -0.08 -1.52 6.63 31.35 0.21 -1.32 16 17 C -0.14 -4.00 6.73 32.80 0.22 -3.78 16 18 C 0.19 6.65 3.43 44.98 0.15 6.80 16 19 H 0.04 1.60 8.12 -2.38 -0.02 1.58 16 20 N -0.75 -33.46 4.93 -323.00 -1.59 -35.06 16 21 C -0.22 -12.57 10.46 84.03 0.88 -11.69 16 22 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 24 N -0.98 -63.09 13.97 21.65 0.30 -62.78 16 25 Si 0.95 45.23 27.73 68.60 1.90 47.13 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 28 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 29 C -0.13 -3.36 2.18 -11.19 -0.02 -3.39 16 30 H 0.07 2.00 7.75 -2.38 -0.02 1.98 16 31 C 0.13 3.66 6.82 84.78 0.58 4.24 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.92 7.65 -2.39 -0.02 0.90 16 35 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.10 0.43 8.05 -2.39 -0.02 0.41 16 38 H 0.08 1.23 8.04 -2.38 -0.02 1.21 16 39 H 0.08 1.25 7.61 -2.39 -0.02 1.23 16 40 H 0.11 0.99 7.91 -2.39 -0.02 0.97 16 41 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.11 0.78 7.58 -2.39 -0.02 0.76 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.05 1.77 7.98 -2.39 -0.02 1.75 16 48 H 0.36 15.72 5.49 -92.71 -0.51 15.21 16 49 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 51 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -78.40 410.43 4.18 -74.22 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.36 Total: 21.65 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.84 Total: -4.36 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -4.68 Total: -122.61 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.75 Total: -16.03 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -78.40 4.18 -74.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026417395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.669 kcal (2) G-P(sol) polarization free energy of solvation -78.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds