Wall clock time and date at job start Wed Apr 1 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30178 * 126.80414 * 2 1 4 4 O 1.20917 * 111.60526 * 180.25203 * 3 2 1 5 5 C 1.34049 * 111.56526 * 359.74749 * 4 3 2 6 6 C 1.50700 * 126.77265 * 180.02562 * 5 4 3 7 7 C 1.35441 * 106.44752 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00716 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46912 * 90.00193 * 8 7 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00161 * 179.97438 * 10 9 8 13 13 C 1.49223 * 126.05661 * 0.02713 * 12 10 9 14 14 C 1.50341 * 104.85695 * 172.92741 * 13 12 10 15 15 H 1.08992 * 110.05716 * 279.53833 * 14 13 12 16 16 C 1.51004 * 125.56323 * 144.33230 * 14 13 12 17 17 C 1.56401 * 101.59369 * 203.98195 * 16 14 13 18 18 C 1.55944 * 105.78949 * 25.01344 * 17 16 14 19 19 H 1.08999 * 110.48900 * 126.34489 * 18 17 16 20 20 N 1.46498 * 110.49715 * 248.87282 * 18 17 16 21 21 C 1.36936 * 120.00011 * 273.55146 * 20 18 17 22 22 H 1.07998 * 120.00227 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99980 * 180.02562 * 21 20 18 24 24 N 1.31611 * 119.99886 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99617 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46993 * 90.00602 * 25 23 21 27 27 H 1.48499 * 109.46936 * 210.00223 * 25 23 21 28 28 H 1.48493 * 109.47302 * 330.00322 * 25 23 21 29 29 C 1.50296 * 104.15631 * 7.54717 * 18 17 16 30 30 H 1.08992 * 109.99968 * 80.48705 * 29 18 17 31 31 C 1.49690 * 126.06063 * 179.71816 * 12 10 9 32 32 H 1.08999 * 109.47089 * 270.16352 * 1 2 3 33 33 H 1.09006 * 109.47064 * 30.16717 * 1 2 3 34 34 H 1.09000 * 109.47207 * 150.16255 * 1 2 3 35 35 H 1.09002 * 109.46828 * 269.99662 * 6 5 4 36 36 H 1.08998 * 109.47811 * 29.99663 * 6 5 4 37 37 H 1.08996 * 109.47216 * 150.00278 * 6 5 4 38 38 H 1.09002 * 109.47152 * 329.99965 * 8 7 5 39 39 H 1.09001 * 109.46980 * 210.00065 * 8 7 5 40 40 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 41 41 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 42 42 H 1.08994 * 110.35910 * 291.77916 * 13 12 10 43 43 H 1.09007 * 110.35636 * 54.08377 * 13 12 10 44 44 H 1.09000 * 111.00310 * 322.05570 * 16 14 13 45 45 H 1.08996 * 111.00161 * 85.86586 * 16 14 13 46 46 H 1.08999 * 110.18830 * 144.09707 * 17 16 14 47 47 H 1.09009 * 110.18522 * 265.86420 * 17 16 14 48 48 H 0.97002 * 119.99855 * 93.55013 * 20 18 17 49 49 H 0.97006 * 119.99930 * 179.97438 * 24 23 21 50 50 H 1.09005 * 110.84650 * 273.06026 * 31 12 10 51 51 H 1.09001 * 110.84435 * 36.67141 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3696 -0.0078 7 6 2.3539 -1.1321 0.0038 8 6 1.9590 -2.5864 0.0077 9 6 1.8330 -3.0767 1.4515 10 6 1.4374 -4.5309 1.4554 11 8 1.2730 -5.1174 0.4067 12 7 1.2673 -5.1799 2.6244 13 6 1.4337 -4.5939 3.9866 14 6 0.9619 -5.6669 4.9281 15 1 -0.1266 -5.6625 4.9844 16 6 1.5494 -5.9634 6.2871 17 6 1.1399 -7.4595 6.4871 18 6 0.9569 -8.0446 5.0532 19 1 1.5603 -8.9437 4.9282 20 7 -0.4552 -8.3361 4.7944 21 6 -0.9851 -9.5421 5.1683 22 1 -0.3619 -10.2787 5.6536 23 6 -2.3231 -9.8185 4.9226 24 7 -2.8323 -10.9779 5.2814 25 14 -3.4009 -8.5448 4.0825 26 1 -3.3467 -8.7430 2.6118 27 1 -4.8020 -8.6955 4.5510 28 1 -2.9108 -7.1836 4.4170 29 6 1.4436 -6.9505 4.1449 30 1 2.5321 -6.9666 4.0919 31 6 0.8718 -6.6145 2.7863 32 1 -0.3633 0.0029 1.0277 33 1 -0.3633 0.8885 -0.5165 34 1 -0.3633 -0.8914 -0.5113 35 1 5.2110 -1.5552 -1.0365 36 1 5.6681 -0.7852 0.5018 37 1 4.7672 -2.3203 0.5080 38 1 2.7199 -3.1710 -0.5094 39 1 1.0022 -2.7044 -0.5009 40 1 2.7898 -2.9587 1.9602 41 1 1.0721 -2.4922 1.9686 42 1 2.4816 -4.3595 4.1732 43 1 0.8194 -3.6996 4.0923 44 1 2.6338 -5.8533 6.2764 45 1 1.1021 -5.3296 7.0528 46 1 1.9269 -7.9976 7.0154 47 1 0.2039 -7.5223 7.0423 48 1 -1.0149 -7.6747 4.3582 49 1 -3.7674 -11.1709 5.1101 50 1 -0.2130 -6.7206 2.7821 51 1 1.3260 -7.2319 2.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026417396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:26 Heat of formation + Delta-G solvation = 43.869900 kcal Electronic energy + Delta-G solvation = -30879.544849 eV Core-core repulsion = 26782.600410 eV Total energy + Delta-G solvation = -4096.944438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.22841 -40.70476 -38.94574 -36.18778 -35.38833 -34.11970 -33.42211 -32.16959 -31.17747 -29.73875 -28.99371 -28.88077 -28.02612 -25.99180 -25.16946 -23.19832 -22.74482 -21.55916 -20.41785 -20.14498 -19.25449 -18.99474 -17.97729 -17.92919 -17.35945 -16.69672 -16.33017 -15.88980 -15.00111 -14.92500 -14.62511 -14.42843 -14.16790 -14.02795 -13.85215 -13.82886 -13.54109 -13.24272 -13.18083 -12.95642 -12.84090 -12.71571 -12.64331 -12.50364 -12.27291 -12.02044 -11.93712 -11.62523 -11.45696 -11.16591 -11.09685 -10.94233 -10.78284 -10.51566 -10.39936 -10.17647 -10.17046 -9.94636 -9.74213 -9.60740 -9.40104 -8.97884 -8.70287 -7.32309 -5.81315 -3.17265 1.12607 1.85746 2.57692 2.74399 2.85843 3.32381 3.36253 3.42529 3.84655 3.99859 4.11075 4.34672 4.45981 4.54533 4.66508 4.74378 4.80339 4.85487 4.93721 4.98552 5.04603 5.10740 5.14945 5.16337 5.19430 5.28075 5.33432 5.37987 5.41690 5.42859 5.48666 5.51803 5.55836 5.62278 5.67674 5.72108 5.76926 5.84536 5.93117 5.96857 6.06810 6.10815 6.21178 6.26420 6.35067 6.45695 6.66208 6.90475 7.45968 7.95041 7.97672 8.08968 8.37859 9.15471 9.88040 10.06881 11.36960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002368 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.185130 B =11820.747211 C =12584.845938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.030 4.030 6 C -0.075 4.075 7 C -0.198 4.198 8 C -0.025 4.025 9 C -0.130 4.130 10 C 0.527 3.473 11 O -0.543 6.543 12 N -0.626 5.626 13 C 0.121 3.879 14 C -0.131 4.131 15 H 0.085 0.915 16 C -0.095 4.095 17 C -0.144 4.144 18 C 0.200 3.800 19 H 0.064 0.936 20 N -0.743 5.743 21 C -0.244 4.244 22 H 0.092 0.908 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.879 3.121 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.279 1.279 29 C -0.123 4.123 30 H 0.081 0.919 31 C 0.128 3.872 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.077 0.923 48 H 0.360 0.640 49 H 0.260 0.740 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 21.840 -6.407 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.093 4.093 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.063 4.063 9 C -0.170 4.170 10 C 0.316 3.684 11 O -0.421 6.421 12 N -0.361 5.361 13 C -0.001 4.001 14 C -0.150 4.150 15 H 0.103 0.897 16 C -0.133 4.133 17 C -0.185 4.185 18 C 0.089 3.911 19 H 0.082 0.918 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.579 5.579 25 Si 0.710 3.290 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.143 4.143 30 H 0.099 0.901 31 C 0.008 3.992 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.194 0.806 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.793 22.646 -6.980 27.935 hybrid contribution -1.098 0.171 -0.404 1.183 sum 13.694 22.817 -7.384 27.617 Atomic orbital electron populations 1.20200 0.85937 1.03920 1.03539 1.23486 0.98967 0.88479 1.02534 1.73849 0.89293 1.23958 1.20359 1.84799 1.21647 1.22550 1.67908 1.24292 0.98270 0.83786 1.02959 1.20367 0.89994 0.98640 1.04274 1.20979 0.91601 0.97520 1.10112 1.19610 1.03746 0.87343 0.95643 1.21604 1.03720 0.92861 0.98781 1.20232 0.77175 0.88669 0.82371 1.90724 1.51819 1.68906 1.30607 1.49924 1.68415 1.12380 1.05400 1.21280 1.00916 0.96244 0.81620 1.22258 1.02043 0.94911 0.95777 0.89660 1.21714 0.99583 0.97764 0.94280 1.23811 1.01698 0.93065 0.99918 1.20110 0.86551 0.94016 0.90430 0.91825 1.42805 1.05908 1.17353 1.72519 1.19066 0.94104 0.91557 1.32645 0.89052 1.24657 0.96767 0.96548 1.00929 1.69689 1.13793 1.22048 1.52420 0.86644 0.80804 0.81572 0.80020 1.20923 1.21684 1.20545 1.22560 1.00596 0.97079 0.94030 0.90069 1.21508 1.00315 0.80196 0.97229 0.90060 0.90518 0.89811 0.89283 0.89735 0.88961 0.89617 0.89574 0.88961 0.88917 0.91194 0.91200 0.91822 0.91924 0.92377 0.90381 0.80619 0.93022 0.90761 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.00 0.37 -0.22 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.23 12.07 33.42 0.40 -3.83 16 4 O 0.10 0.98 11.20 17.15 0.19 1.18 16 5 C -0.03 -0.24 7.49 -35.31 -0.26 -0.51 16 6 C -0.08 -0.34 10.25 36.01 0.37 0.02 16 7 C -0.20 -1.78 5.57 -104.42 -0.58 -2.36 16 8 C -0.03 -0.22 4.75 -27.88 -0.13 -0.36 16 9 C -0.13 -1.13 4.92 -27.88 -0.14 -1.26 16 10 C 0.53 6.74 7.88 -10.98 -0.09 6.66 16 11 O -0.54 -9.00 16.31 5.56 0.09 -8.91 16 12 N -0.63 -7.97 3.42 -171.40 -0.59 -8.56 16 13 C 0.12 1.22 6.41 -3.86 -0.02 1.20 16 14 C -0.13 -1.61 2.73 -90.27 -0.25 -1.86 16 15 H 0.09 1.25 7.67 -51.93 -0.40 0.85 16 16 C -0.10 -1.09 6.72 -25.91 -0.17 -1.27 16 17 C -0.14 -2.16 6.73 -23.33 -0.16 -2.32 16 18 C 0.20 3.44 3.44 -67.71 -0.23 3.21 16 19 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 20 N -0.74 -16.28 4.65 -53.21 -0.25 -16.53 16 21 C -0.24 -6.55 10.46 -15.06 -0.16 -6.71 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 25 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 29 C -0.12 -1.72 2.61 -90.20 -0.24 -1.96 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 C 0.13 1.95 6.52 -3.18 -0.02 1.93 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.36 8.05 -51.93 -0.42 -0.06 16 38 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.09 0.83 7.61 -51.93 -0.40 0.44 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.37 7.99 -51.92 -0.41 0.95 16 48 H 0.36 7.89 3.95 -40.82 -0.16 7.73 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 50 H 0.07 1.29 6.88 -51.93 -0.36 0.93 16 51 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 407.90 15.07 6.15 6.15 Total: -1.00 -33.51 407.90 -8.81 -42.32 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.46 Total: 5.14 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.41 Total: -6.06 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.34 Total: -56.83 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.28 Total: -7.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.51 -8.81 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026417396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.188 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds