Wall clock time and date at job start Wed Apr 1 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30178 * 126.80414 * 2 1 4 4 O 1.20917 * 111.60526 * 180.25203 * 3 2 1 5 5 C 1.34049 * 111.56526 * 359.74749 * 4 3 2 6 6 C 1.50700 * 126.77265 * 180.02562 * 5 4 3 7 7 C 1.35441 * 106.44752 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00716 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46912 * 90.00193 * 8 7 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00161 * 179.97438 * 10 9 8 13 13 C 1.49223 * 126.05661 * 0.02713 * 12 10 9 14 14 C 1.50341 * 104.85695 * 172.92741 * 13 12 10 15 15 H 1.08992 * 110.05716 * 279.53833 * 14 13 12 16 16 C 1.51004 * 125.56323 * 144.33230 * 14 13 12 17 17 C 1.56401 * 101.59369 * 203.98195 * 16 14 13 18 18 C 1.55944 * 105.78949 * 25.01344 * 17 16 14 19 19 H 1.08999 * 110.48900 * 126.34489 * 18 17 16 20 20 N 1.46498 * 110.49715 * 248.87282 * 18 17 16 21 21 C 1.36936 * 120.00011 * 273.55146 * 20 18 17 22 22 H 1.07998 * 120.00227 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99980 * 180.02562 * 21 20 18 24 24 N 1.31611 * 119.99886 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99617 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46993 * 90.00602 * 25 23 21 27 27 H 1.48499 * 109.46936 * 210.00223 * 25 23 21 28 28 H 1.48493 * 109.47302 * 330.00322 * 25 23 21 29 29 C 1.50296 * 104.15631 * 7.54717 * 18 17 16 30 30 H 1.08992 * 109.99968 * 80.48705 * 29 18 17 31 31 C 1.49690 * 126.06063 * 179.71816 * 12 10 9 32 32 H 1.08999 * 109.47089 * 270.16352 * 1 2 3 33 33 H 1.09006 * 109.47064 * 30.16717 * 1 2 3 34 34 H 1.09000 * 109.47207 * 150.16255 * 1 2 3 35 35 H 1.09002 * 109.46828 * 269.99662 * 6 5 4 36 36 H 1.08998 * 109.47811 * 29.99663 * 6 5 4 37 37 H 1.08996 * 109.47216 * 150.00278 * 6 5 4 38 38 H 1.09002 * 109.47152 * 329.99965 * 8 7 5 39 39 H 1.09001 * 109.46980 * 210.00065 * 8 7 5 40 40 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 41 41 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 42 42 H 1.08994 * 110.35910 * 291.77916 * 13 12 10 43 43 H 1.09007 * 110.35636 * 54.08377 * 13 12 10 44 44 H 1.09000 * 111.00310 * 322.05570 * 16 14 13 45 45 H 1.08996 * 111.00161 * 85.86586 * 16 14 13 46 46 H 1.08999 * 110.18830 * 144.09707 * 17 16 14 47 47 H 1.09009 * 110.18522 * 265.86420 * 17 16 14 48 48 H 0.97002 * 119.99855 * 93.55013 * 20 18 17 49 49 H 0.97006 * 119.99930 * 179.97438 * 24 23 21 50 50 H 1.09005 * 110.84650 * 273.06026 * 31 12 10 51 51 H 1.09001 * 110.84435 * 36.67141 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3696 -0.0078 7 6 2.3539 -1.1321 0.0038 8 6 1.9590 -2.5864 0.0077 9 6 1.8330 -3.0767 1.4515 10 6 1.4374 -4.5309 1.4554 11 8 1.2730 -5.1174 0.4067 12 7 1.2673 -5.1799 2.6244 13 6 1.4337 -4.5939 3.9866 14 6 0.9619 -5.6669 4.9281 15 1 -0.1266 -5.6625 4.9844 16 6 1.5494 -5.9634 6.2871 17 6 1.1399 -7.4595 6.4871 18 6 0.9569 -8.0446 5.0532 19 1 1.5603 -8.9437 4.9282 20 7 -0.4552 -8.3361 4.7944 21 6 -0.9851 -9.5421 5.1683 22 1 -0.3619 -10.2787 5.6536 23 6 -2.3231 -9.8185 4.9226 24 7 -2.8323 -10.9779 5.2814 25 14 -3.4009 -8.5448 4.0825 26 1 -3.3467 -8.7430 2.6118 27 1 -4.8020 -8.6955 4.5510 28 1 -2.9108 -7.1836 4.4170 29 6 1.4436 -6.9505 4.1449 30 1 2.5321 -6.9666 4.0919 31 6 0.8718 -6.6145 2.7863 32 1 -0.3633 0.0029 1.0277 33 1 -0.3633 0.8885 -0.5165 34 1 -0.3633 -0.8914 -0.5113 35 1 5.2110 -1.5552 -1.0365 36 1 5.6681 -0.7852 0.5018 37 1 4.7672 -2.3203 0.5080 38 1 2.7199 -3.1710 -0.5094 39 1 1.0022 -2.7044 -0.5009 40 1 2.7898 -2.9587 1.9602 41 1 1.0721 -2.4922 1.9686 42 1 2.4816 -4.3595 4.1732 43 1 0.8194 -3.6996 4.0923 44 1 2.6338 -5.8533 6.2764 45 1 1.1021 -5.3296 7.0528 46 1 1.9269 -7.9976 7.0154 47 1 0.2039 -7.5223 7.0423 48 1 -1.0149 -7.6747 4.3582 49 1 -3.7674 -11.1709 5.1101 50 1 -0.2130 -6.7206 2.7821 51 1 1.3260 -7.2319 2.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026417396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:25 Heat of formation + Delta-G solvation = 23.471662 kcal Electronic energy + Delta-G solvation = -30880.429383 eV Core-core repulsion = 26782.600410 eV Total energy + Delta-G solvation = -4097.828972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.92105 -41.77490 -40.00856 -36.95098 -36.68081 -35.06417 -34.74468 -33.00481 -32.86613 -30.81942 -30.10071 -29.62047 -28.57748 -27.20884 -26.03390 -24.83292 -23.99507 -22.27686 -21.14550 -21.03355 -20.52601 -20.11597 -19.75335 -18.68007 -18.14650 -17.56416 -17.48399 -16.89354 -16.45199 -16.05537 -15.79678 -15.48567 -15.31705 -14.97441 -14.88518 -14.60819 -14.33218 -14.06495 -13.99502 -13.89617 -13.82924 -13.60667 -13.49931 -13.42023 -13.28054 -13.22114 -13.00094 -12.87755 -12.67552 -12.32509 -12.27597 -12.22903 -11.94204 -11.85461 -11.74367 -11.62340 -11.43573 -11.07416 -10.95224 -10.88694 -10.74705 -10.05644 -9.72749 -9.28230 -8.02654 -5.33883 0.49487 1.17446 1.31837 1.36051 1.41653 1.62901 1.85408 2.22578 2.45366 2.95760 3.21429 3.29560 3.51348 3.56063 3.59961 3.80955 3.86219 3.92831 4.01386 4.16693 4.23619 4.29285 4.32046 4.40725 4.44986 4.47083 4.55359 4.59967 4.62082 4.70150 4.70499 4.71937 4.72307 4.80712 4.83277 4.92902 4.93759 5.00213 5.01335 5.06191 5.09596 5.16964 5.19714 5.22946 5.35575 5.37558 5.44192 5.63401 5.81529 6.22759 6.51929 7.08667 7.12762 7.31592 7.86413 8.03008 9.19218 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016022 B = 0.002368 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.185130 B =11820.747211 C =12584.845938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.016 3.984 3 N -0.400 5.400 4 O 0.083 5.917 5 C -0.020 4.020 6 C -0.077 4.077 7 C -0.209 4.209 8 C -0.018 4.018 9 C -0.117 4.117 10 C 0.524 3.476 11 O -0.589 6.589 12 N -0.625 5.625 13 C 0.124 3.876 14 C -0.118 4.118 15 H 0.058 0.942 16 C -0.079 4.079 17 C -0.141 4.141 18 C 0.186 3.814 19 H 0.049 0.951 20 N -0.746 5.746 21 C -0.219 4.219 22 H 0.061 0.939 23 C -0.063 4.063 24 N -0.983 5.983 25 Si 0.943 3.057 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.255 1.255 29 C -0.121 4.121 30 H 0.107 0.893 31 C 0.127 3.873 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.362 0.638 49 H 0.256 0.744 50 H 0.046 0.954 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.444 25.067 -5.946 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 N -0.109 5.109 4 O 0.021 5.979 5 C -0.083 4.083 6 C -0.134 4.134 7 C -0.213 4.213 8 C -0.056 4.056 9 C -0.156 4.156 10 C 0.314 3.686 11 O -0.470 6.470 12 N -0.359 5.359 13 C 0.004 3.996 14 C -0.137 4.137 15 H 0.076 0.924 16 C -0.117 4.117 17 C -0.181 4.181 18 C 0.077 3.923 19 H 0.067 0.933 20 N -0.389 5.389 21 C -0.350 4.350 22 H 0.079 0.921 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.772 3.228 26 H -0.212 1.212 27 H -0.223 1.223 28 H -0.179 1.179 29 C -0.141 4.141 30 H 0.125 0.875 31 C 0.004 3.996 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.196 0.804 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.176 25.940 -6.490 31.781 hybrid contribution -1.700 -0.926 -0.547 2.012 sum 15.476 25.014 -7.037 30.244 Atomic orbital electron populations 1.20289 0.84809 1.04261 1.04346 1.23907 0.99947 0.88626 1.01776 1.73847 0.89888 1.25001 1.22178 1.84764 1.21317 1.23654 1.68207 1.24929 0.99461 0.83091 1.00835 1.20590 0.88587 0.98814 1.05402 1.20968 0.91816 0.97184 1.11317 1.19490 1.03056 0.87217 0.95820 1.21594 1.05488 0.89489 0.99033 1.20986 0.76087 0.89994 0.81506 1.90709 1.53805 1.70189 1.32291 1.49978 1.67994 1.11166 1.06793 1.21484 1.03512 0.95683 0.78927 1.22228 1.00575 0.94590 0.96301 0.92395 1.21647 1.01600 0.94537 0.93945 1.23638 1.00783 0.96327 0.97388 1.20414 0.83647 0.95024 0.93222 0.93293 1.42812 1.07987 1.15685 1.72463 1.19051 0.93563 0.92430 1.29987 0.92060 1.25377 0.98454 0.98618 1.02954 1.69858 1.13942 1.24465 1.55189 0.85589 0.78502 0.80336 0.78417 1.21237 1.22268 1.17938 1.22389 1.01711 0.96718 0.93248 0.87474 1.21291 0.98564 0.82242 0.97471 0.88947 0.90433 0.89227 0.88184 0.88149 0.87710 0.89712 0.90919 0.86077 0.87415 0.87601 0.88946 0.88559 0.90426 0.91113 0.93456 0.80433 0.93516 0.93558 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.39 71.23 0.74 -0.36 16 2 C 0.02 0.29 7.33 43.58 0.32 0.61 16 3 N -0.40 -8.76 12.07 -49.55 -0.60 -9.35 16 4 O 0.08 1.57 11.20 71.55 0.80 2.38 16 5 C -0.02 -0.27 7.49 25.04 0.19 -0.09 16 6 C -0.08 -0.44 10.25 71.24 0.73 0.29 16 7 C -0.21 -3.27 5.57 -19.74 -0.11 -3.38 16 8 C -0.02 -0.27 4.75 29.85 0.14 -0.13 16 9 C -0.12 -1.58 4.92 29.85 0.15 -1.43 16 10 C 0.52 12.07 7.88 87.66 0.69 12.77 16 11 O -0.59 -19.05 16.31 -3.02 -0.05 -19.10 16 12 N -0.62 -14.05 3.42 -814.59 -2.79 -16.84 16 13 C 0.12 1.87 6.41 84.99 0.54 2.42 16 14 C -0.12 -2.46 2.73 -10.56 -0.03 -2.49 16 15 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 16 C -0.08 -1.47 6.72 31.13 0.21 -1.26 16 17 C -0.14 -3.98 6.73 32.80 0.22 -3.76 16 18 C 0.19 6.28 3.44 45.14 0.16 6.44 16 19 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 20 N -0.75 -33.01 4.65 -322.25 -1.50 -34.51 16 21 C -0.22 -12.14 10.46 84.04 0.88 -11.26 16 22 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 23 C -0.06 -3.68 5.50 84.87 0.47 -3.21 16 24 N -0.98 -62.95 13.97 21.65 0.30 -62.65 16 25 Si 0.94 45.98 27.74 68.60 1.90 47.88 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.25 -11.18 6.52 99.48 0.65 -10.54 16 29 C -0.12 -3.13 2.61 -10.52 -0.03 -3.16 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 C 0.13 3.73 6.52 85.16 0.56 4.28 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.09 1.10 7.65 -2.39 -0.02 1.08 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.10 0.38 8.05 -2.39 -0.02 0.36 16 38 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 39 H 0.07 1.32 7.61 -2.39 -0.02 1.30 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 1.63 7.99 -2.38 -0.02 1.61 16 48 H 0.36 15.80 3.95 -92.71 -0.37 15.43 16 49 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 50 H 0.05 1.61 6.88 -2.38 -0.02 1.59 16 51 H 0.06 2.09 8.09 -2.39 -0.02 2.07 16 Total: -1.00 -77.93 407.90 4.39 -73.54 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.50 Total: 22.38 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.82 Total: -3.72 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -4.58 Total: -123.35 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.75 Total: -16.73 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -77.93 4.39 -73.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026417396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.007 kcal (2) G-P(sol) polarization free energy of solvation -77.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds