Wall clock time and date at job start Wed Apr 1 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30176 * 126.80082 * 2 1 4 4 O 1.20921 * 111.60136 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56956 * 359.76486 * 4 3 2 6 6 C 1.50694 * 126.77677 * 180.28981 * 5 4 3 7 7 C 1.35443 * 106.44254 * 0.37707 * 5 4 3 8 8 C 1.50709 * 128.00238 * 179.91219 * 7 5 4 9 9 C 1.52999 * 109.47166 * 269.67828 * 8 7 5 10 10 C 1.50698 * 109.46802 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00652 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99940 * 180.02562 * 10 9 8 13 13 C 1.47219 * 126.69776 * 359.97438 * 12 10 9 14 14 C 1.53782 * 106.37771 * 148.72288 * 13 12 10 15 15 H 1.09004 * 111.70141 * 256.37348 * 14 13 12 16 16 C 1.54326 * 109.06319 * 132.42546 * 14 13 12 17 17 C 1.55047 * 103.93287 * 222.03077 * 16 14 13 18 18 C 1.55059 * 102.14557 * 40.03940 * 17 16 14 19 19 H 1.09002 * 110.53388 * 201.34824 * 18 17 16 20 20 N 1.46493 * 110.53323 * 78.57157 * 18 17 16 21 21 C 1.36941 * 119.99988 * 132.46561 * 20 18 17 22 22 H 1.07999 * 120.00150 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00174 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99971 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99997 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47160 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47249 * 120.00264 * 25 23 21 28 28 H 1.48499 * 109.47366 * 240.00105 * 25 23 21 29 29 C 1.54361 * 103.91752 * 319.98671 * 18 17 16 30 30 H 1.08993 * 112.32813 * 262.34818 * 29 18 17 31 31 C 1.47210 * 126.70368 * 179.97438 * 12 10 9 32 32 H 1.08995 * 109.47370 * 270.02102 * 1 2 3 33 33 H 1.08999 * 109.47135 * 30.02704 * 1 2 3 34 34 H 1.09007 * 109.47300 * 150.02554 * 1 2 3 35 35 H 1.08998 * 109.47236 * 270.10971 * 6 5 4 36 36 H 1.09008 * 109.47270 * 30.10675 * 6 5 4 37 37 H 1.09002 * 109.47350 * 150.10979 * 6 5 4 38 38 H 1.09005 * 109.46803 * 149.67933 * 8 7 5 39 39 H 1.08996 * 109.47264 * 29.68144 * 8 7 5 40 40 H 1.09000 * 109.47009 * 60.00776 * 9 8 7 41 41 H 1.08996 * 109.47287 * 300.00302 * 9 8 7 42 42 H 1.08994 * 110.07793 * 29.48855 * 13 12 10 43 43 H 1.09002 * 110.07043 * 267.94232 * 13 12 10 44 44 H 1.08994 * 110.53073 * 103.41850 * 16 14 13 45 45 H 1.08995 * 110.53363 * 340.63967 * 16 14 13 46 46 H 1.09003 * 110.90842 * 158.25758 * 17 16 14 47 47 H 1.09001 * 110.91158 * 281.81780 * 17 16 14 48 48 H 0.97000 * 120.00361 * 312.46271 * 20 18 17 49 49 H 0.96997 * 120.00152 * 179.97438 * 24 23 21 50 50 H 1.08998 * 110.07601 * 330.50988 * 31 12 10 51 51 H 1.09000 * 110.07363 * 91.99420 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6068 0.0060 6 6 4.9021 -1.3695 0.0144 7 6 2.3539 -1.1320 0.0006 8 6 1.9591 -2.5864 0.0016 9 6 1.8252 -3.0795 -1.4406 10 6 1.4310 -4.5340 -1.4395 11 8 1.2722 -5.1186 -0.3889 12 7 1.2548 -5.1853 -2.6063 13 6 1.4067 -4.6241 -3.9588 14 6 1.8883 -5.7771 -4.8551 15 1 2.9529 -5.6985 -5.0758 16 6 1.0390 -5.8026 -6.1434 17 6 0.7595 -7.3097 -6.3766 18 6 0.4939 -7.8189 -4.9363 19 1 0.6501 -8.8960 -4.8767 20 7 -0.8638 -7.4708 -4.5104 21 6 -1.6623 -8.4179 -3.9266 22 1 -1.2909 -9.4213 -3.7799 23 6 -2.9486 -8.0879 -3.5226 24 7 -3.4011 -6.8649 -3.7009 25 14 -4.0375 -9.3797 -2.7257 26 1 -3.2989 -10.6651 -2.6397 27 1 -4.4158 -8.9344 -1.3603 28 1 -5.2633 -9.5664 -3.5428 29 6 1.5381 -7.0713 -4.0798 30 1 2.4227 -7.6770 -3.8833 31 6 0.8728 -6.5967 -2.7771 32 1 -0.3634 0.0004 1.0276 33 1 -0.3633 0.8897 -0.5142 34 1 -0.3634 -0.8903 -0.5135 35 1 5.2209 -1.5555 -1.0112 36 1 5.6632 -0.7847 0.5311 37 1 4.7623 -2.3200 0.5294 38 1 1.0050 -2.7035 0.5157 39 1 2.7228 -3.1699 0.5156 40 1 2.7792 -2.9625 -1.9546 41 1 1.0615 -2.4960 -1.9547 42 1 2.1456 -3.8228 -3.9506 43 1 0.4489 -4.2468 -4.3170 44 1 1.5996 -5.3839 -6.9792 45 1 0.1058 -5.2588 -5.9970 46 1 -0.1190 -7.4495 -7.0066 47 1 1.6290 -7.8042 -6.8098 48 1 -1.1973 -6.5694 -4.6418 49 1 -4.3001 -6.6344 -3.4189 50 1 1.2352 -7.1869 -1.9354 51 1 -0.2108 -6.6841 -2.8560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026417397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:29 Heat of formation + Delta-G solvation = 28.540528 kcal Electronic energy + Delta-G solvation = -31328.408651 eV Core-core repulsion = 27230.799481 eV Total energy + Delta-G solvation = -4097.609170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.07302 -40.18507 -38.49614 -35.98190 -34.94257 -33.95343 -33.39241 -31.94154 -30.91118 -29.33896 -28.81266 -28.35368 -27.87108 -25.58579 -24.88406 -23.38809 -22.87063 -21.37593 -20.24923 -19.84419 -18.80923 -18.62568 -17.79379 -17.54570 -17.22048 -16.62003 -15.92918 -15.36527 -15.05765 -14.87213 -14.50805 -14.13819 -14.04068 -13.67548 -13.58395 -13.40971 -13.34981 -13.11538 -12.97277 -12.80819 -12.75213 -12.50852 -12.46630 -12.37418 -12.09050 -11.81718 -11.42176 -11.25176 -10.94856 -10.90379 -10.81039 -10.68634 -10.56703 -10.25966 -10.25234 -10.10162 -9.99098 -9.97313 -9.66194 -9.53596 -9.21732 -9.02866 -8.16559 -6.99532 -5.85240 -3.14807 1.28014 2.02457 2.92549 2.94067 3.38301 3.40787 3.47137 3.48862 4.02751 4.26679 4.53235 4.54391 4.64745 4.74432 4.87415 4.93007 4.99729 5.05227 5.07630 5.13193 5.21747 5.31380 5.35126 5.42579 5.46632 5.50903 5.52587 5.59597 5.63580 5.64848 5.73257 5.77667 5.87892 5.89094 5.94836 5.99538 6.04101 6.06880 6.12631 6.18552 6.29253 6.42849 6.51543 6.63248 6.68424 6.84001 6.88796 7.23171 7.66165 7.96210 8.12821 8.32807 8.49949 9.44994 9.99196 10.33617 11.36348 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.002728 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.873465 B =10260.010288 C =11424.206453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.033 4.033 6 C -0.074 4.074 7 C -0.195 4.195 8 C -0.025 4.025 9 C -0.129 4.129 10 C 0.525 3.475 11 O -0.548 6.548 12 N -0.610 5.610 13 C 0.107 3.893 14 C -0.099 4.099 15 H 0.078 0.922 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.707 5.707 21 C -0.248 4.248 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.928 5.928 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C -0.123 4.123 30 H 0.073 0.927 31 C 0.093 3.907 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.059 0.941 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.083 10.956 1.059 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 N -0.076 5.076 4 O 0.029 5.971 5 C -0.097 4.097 6 C -0.132 4.132 7 C -0.199 4.199 8 C -0.063 4.063 9 C -0.169 4.169 10 C 0.313 3.687 11 O -0.427 6.427 12 N -0.342 5.342 13 C -0.017 4.017 14 C -0.118 4.118 15 H 0.096 0.904 16 C -0.152 4.152 17 C -0.178 4.178 18 C 0.065 3.935 19 H 0.085 0.915 20 N -0.346 5.346 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.736 3.264 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.145 4.145 30 H 0.091 0.909 31 C -0.028 4.028 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.667 11.854 1.787 19.727 hybrid contribution -0.780 -0.981 0.276 1.283 sum 14.887 10.873 2.063 18.550 Atomic orbital electron populations 1.20211 0.85849 1.04036 1.03570 1.23507 0.99012 0.88443 1.02362 1.73835 0.89291 1.23968 1.20500 1.84785 1.21673 1.22551 1.68054 1.24255 0.98258 0.83789 1.03360 1.20354 0.89981 0.98703 1.04125 1.21026 0.91568 0.97638 1.09651 1.19616 1.03715 0.87096 0.95895 1.21583 1.03421 0.93429 0.98498 1.20086 0.77571 0.88482 0.82532 1.90695 1.52404 1.69083 1.30479 1.48609 1.67408 1.13187 1.05003 1.22261 1.00785 0.96212 0.82406 1.22538 0.99156 0.94814 0.95300 0.90372 1.22490 0.99192 0.97863 0.95619 1.23071 1.00614 0.94998 0.99139 1.21030 0.85370 0.96850 0.90272 0.91540 1.42451 1.09464 1.12167 1.70501 1.19329 0.94358 0.92376 1.31825 0.90902 1.24734 0.97545 0.96542 1.01623 1.69654 1.17707 1.17704 1.52504 0.86150 0.80636 0.80757 0.78832 1.20486 1.21801 1.21901 1.23222 0.99095 0.96185 0.96022 0.90888 1.22757 1.05084 0.79083 0.95875 0.90067 0.90504 0.89663 0.89400 0.89910 0.88889 0.89514 0.89766 0.89314 0.89032 0.91751 0.90998 0.92520 0.91045 0.91211 0.92261 0.77998 0.93460 0.92266 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.00 0.37 -0.40 16 2 C 0.03 0.30 7.33 -82.10 -0.60 -0.30 16 3 N -0.37 -4.82 12.07 33.42 0.40 -4.42 16 4 O 0.09 1.10 11.20 17.17 0.19 1.30 16 5 C -0.03 -0.33 7.49 -35.31 -0.26 -0.59 16 6 C -0.07 -0.45 10.30 36.00 0.37 -0.08 16 7 C -0.19 -2.14 5.58 -104.42 -0.58 -2.72 16 8 C -0.03 -0.28 4.83 -27.88 -0.13 -0.42 16 9 C -0.13 -1.50 4.66 -27.88 -0.13 -1.63 16 10 C 0.52 8.56 7.88 -10.99 -0.09 8.47 16 11 O -0.55 -11.02 16.21 5.56 0.09 -10.93 16 12 N -0.61 -9.98 3.32 -171.58 -0.57 -10.55 16 13 C 0.11 1.42 6.38 -3.24 -0.02 1.40 16 14 C -0.10 -1.29 3.91 -88.53 -0.35 -1.64 16 15 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.11 -1.51 6.14 -24.96 -0.15 -1.66 16 17 C -0.14 -2.06 6.61 -24.56 -0.16 -2.22 16 18 C 0.18 3.14 3.53 -66.13 -0.23 2.91 16 19 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 20 N -0.71 -15.85 2.95 -51.69 -0.15 -16.01 16 21 C -0.25 -6.40 9.42 -15.06 -0.14 -6.54 16 22 H 0.07 1.85 7.70 -52.49 -0.40 1.44 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -26.65 13.06 55.49 0.72 -25.93 16 25 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 C -0.12 -1.94 3.89 -88.51 -0.34 -2.28 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 C 0.09 1.77 6.40 -3.25 -0.02 1.74 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.09 0.52 7.43 -51.93 -0.39 0.13 16 38 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.08 0.93 7.40 -51.93 -0.38 0.55 16 40 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.68 7.31 -51.93 -0.38 0.30 16 43 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.06 6.83 -51.93 -0.35 0.70 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.39 9.29 7.30 -40.82 -0.30 8.99 16 49 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 51 H 0.13 3.01 5.10 -51.93 -0.26 2.74 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -31.52 405.74 -9.07 -40.59 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.28 Total: 9.25 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.57 Total: -6.26 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.41 Total: -56.90 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.28 Total: -9.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.52 -9.07 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026417397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.131 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds