Wall clock time and date at job start Wed Apr 1 2020 04:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30181 * 126.79880 * 2 1 4 4 O 1.20929 * 111.59851 * 180.25127 * 3 2 1 5 5 C 1.34039 * 111.56797 * 359.74239 * 4 3 2 6 6 C 1.50695 * 126.77410 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44486 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00123 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47569 * 2.37824 * 8 7 5 10 10 C 1.53001 * 109.46719 * 242.37908 * 8 7 5 11 11 C 1.52997 * 109.47145 * 122.38104 * 8 7 5 12 12 C 1.50694 * 109.47031 * 184.99457 * 11 8 7 13 13 O 1.21281 * 120.00310 * 0.02562 * 12 11 8 14 14 N 1.34781 * 119.99889 * 180.02562 * 12 11 8 15 15 C 1.48435 * 120.83345 * 359.61330 * 14 12 11 16 16 C 1.53893 * 107.37595 * 132.53822 * 15 14 12 17 17 H 1.08998 * 112.09208 * 182.51670 * 16 15 14 18 18 C 1.54543 * 108.36633 * 306.85921 * 16 15 14 19 19 C 1.54285 * 104.84918 * 89.29652 * 18 16 15 20 20 C 1.54553 * 104.84772 * 0.02562 * 19 18 16 21 21 H 1.09004 * 112.17925 * 146.40702 * 20 19 18 22 22 C 1.47168 * 120.71011 * 180.02562 * 14 12 11 23 23 N 1.48307 * 104.35759 * 24.69869 * 20 19 18 24 24 C 1.36929 * 128.07932 * 139.06867 * 23 20 19 25 25 H 1.07997 * 120.00467 * 191.97705 * 24 23 20 26 26 C 1.38818 * 119.99775 * 11.97057 * 24 23 20 27 27 N 1.31615 * 119.99837 * 6.63763 * 26 24 23 28 28 Si 1.86803 * 119.99783 * 186.63333 * 26 24 23 29 29 H 1.48496 * 109.46759 * 94.98385 * 28 26 24 30 30 H 1.48501 * 109.46813 * 214.98232 * 28 26 24 31 31 H 1.48500 * 109.47245 * 334.98101 * 28 26 24 32 32 H 1.09002 * 109.47302 * 273.68393 * 1 2 3 33 33 H 1.09001 * 109.46759 * 33.67643 * 1 2 3 34 34 H 1.08997 * 109.46954 * 153.67528 * 1 2 3 35 35 H 1.09001 * 109.47504 * 270.00142 * 6 5 4 36 36 H 1.08997 * 109.47394 * 30.00672 * 6 5 4 37 37 H 1.09000 * 109.47060 * 150.00242 * 6 5 4 38 38 H 1.09000 * 109.47396 * 51.76161 * 10 8 7 39 39 H 1.09008 * 109.47125 * 171.76256 * 10 8 7 40 40 H 1.08994 * 109.47366 * 291.76074 * 10 8 7 41 41 H 1.09001 * 109.47118 * 64.99484 * 11 8 7 42 42 H 1.08997 * 109.47040 * 305.00078 * 11 8 7 43 43 H 1.08999 * 109.56889 * 13.39903 * 15 14 12 44 44 H 1.08995 * 110.57526 * 252.24939 * 15 14 12 45 45 H 1.09003 * 110.36502 * 208.13723 * 18 16 15 46 46 H 1.08997 * 110.36925 * 330.45861 * 18 16 15 47 47 H 1.08996 * 110.36808 * 241.15785 * 19 18 16 48 48 H 1.09009 * 110.45604 * 118.88692 * 19 18 16 49 49 H 1.09002 * 109.75116 * 107.60850 * 22 14 12 50 50 H 1.08994 * 109.74895 * 346.87190 * 22 14 12 51 51 H 0.97006 * 119.99720 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0049 5 6 3.6025 -0.6068 -0.0033 6 6 4.9021 -1.3695 -0.0087 7 6 2.3539 -1.1320 0.0028 8 6 1.9591 -2.5863 0.0064 9 1 2.8549 -3.2060 0.0458 10 6 1.1744 -2.9048 -1.2679 11 6 1.0853 -2.8746 1.2288 12 6 0.7921 -4.3510 1.2997 13 8 1.2384 -5.0992 0.4559 14 7 0.0338 -4.8402 2.3008 15 6 -0.5148 -3.9426 3.3481 16 6 -2.0050 -4.2884 3.5154 17 1 -2.4973 -3.6404 4.2404 18 6 -2.6782 -4.2265 2.1257 19 6 -2.5237 -5.6487 1.5478 20 6 -1.7717 -6.4409 2.6411 21 1 -2.0805 -7.4856 2.6782 22 6 -0.2620 -6.2793 2.3855 23 7 -2.0839 -5.7193 3.8986 24 6 -2.3765 -6.2499 5.1265 25 1 -2.7720 -5.6177 5.9077 26 6 -2.1650 -7.6006 5.3672 27 7 -1.5632 -8.3438 4.4629 28 14 -2.7343 -8.3632 6.9746 29 1 -4.0768 -8.9695 6.7866 30 1 -1.7711 -9.4132 7.3928 31 1 -2.8077 -7.3132 8.0221 32 1 -0.3634 0.0660 1.0255 33 1 -0.3633 0.8552 -0.5699 34 1 -0.3633 -0.9211 -0.4557 35 1 5.2103 -1.5552 -1.0376 36 1 5.6686 -0.7850 0.5003 37 1 4.7677 -2.3201 0.5075 38 1 1.7380 -2.5640 -2.1364 39 1 1.0154 -3.9810 -1.3373 40 1 0.2108 -2.3964 -1.2379 41 1 0.1496 -2.3219 1.1450 42 1 1.6107 -2.5646 2.1321 43 1 -0.4109 -2.9050 3.0307 44 1 0.0066 -4.0933 4.2933 45 1 -3.7330 -3.9705 2.2262 46 1 -2.1700 -3.5016 1.4899 47 1 -1.9395 -5.6230 0.6279 48 1 -3.5018 -6.0931 1.3628 49 1 0.3004 -6.7232 3.2071 50 1 0.0073 -6.7664 1.4484 51 1 -1.4150 -9.2876 4.6312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029364983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:29 Heat of formation + Delta-G solvation = 50.794793 kcal Electronic energy + Delta-G solvation = -32493.468021 eV Core-core repulsion = 28396.823868 eV Total energy + Delta-G solvation = -4096.644152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.03255 -40.11185 -38.22889 -36.41912 -33.92350 -33.73680 -32.55687 -32.38304 -30.67642 -29.34725 -28.92106 -28.12588 -27.70736 -25.92791 -24.16392 -23.83004 -23.28978 -20.92148 -20.25564 -19.80274 -19.47392 -18.46843 -17.75373 -17.21450 -16.74135 -16.15232 -15.81810 -15.14779 -14.78793 -14.67304 -14.33949 -14.12266 -13.75954 -13.67746 -13.38843 -13.33747 -13.15012 -13.08683 -12.93967 -12.90104 -12.72591 -12.56337 -12.20936 -11.89391 -11.84831 -11.59865 -11.51845 -11.31576 -11.23329 -11.00160 -10.90952 -10.86658 -10.57244 -10.35500 -10.08555 -9.92854 -9.84995 -9.68283 -9.57411 -9.26982 -9.17416 -8.84208 -8.07266 -6.90582 -5.85165 -3.22877 1.33569 2.08320 2.97763 3.08781 3.32960 3.38593 3.40688 3.55327 4.05800 4.31624 4.37502 4.58709 4.67525 4.96693 4.99764 5.03390 5.13580 5.16991 5.20206 5.28564 5.30685 5.33557 5.41287 5.50757 5.56474 5.58052 5.62735 5.64929 5.71025 5.77999 5.78644 5.83675 5.91014 5.95297 6.00816 6.18516 6.23004 6.28949 6.35779 6.43542 6.49637 6.61277 6.67827 6.76250 6.85459 6.94115 7.26826 7.47634 7.68465 8.05596 8.12813 8.17049 8.68905 9.02778 9.64435 10.39194 11.25419 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.002740 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.617398 B =10215.279967 C =10376.707602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.028 3.972 3 N -0.371 5.371 4 O 0.093 5.907 5 C -0.034 4.034 6 C -0.074 4.074 7 C -0.189 4.189 8 C 0.006 3.994 9 H 0.090 0.910 10 C -0.149 4.149 11 C -0.133 4.133 12 C 0.508 3.492 13 O -0.557 6.557 14 N -0.593 5.593 15 C 0.095 3.905 16 C 0.133 3.867 17 H 0.077 0.923 18 C -0.121 4.121 19 C -0.136 4.136 20 C 0.163 3.837 21 H 0.129 0.871 22 C 0.112 3.888 23 N -0.585 5.585 24 C -0.225 4.225 25 H 0.078 0.922 26 C -0.005 4.005 27 N -0.915 5.915 28 Si 0.913 3.087 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 13.665 -9.131 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.097 4.097 6 C -0.132 4.132 7 C -0.193 4.193 8 C -0.013 4.013 9 H 0.108 0.892 10 C -0.205 4.205 11 C -0.173 4.173 12 C 0.296 3.704 13 O -0.438 6.438 14 N -0.324 5.324 15 C -0.030 4.030 16 C 0.024 3.976 17 H 0.095 0.905 18 C -0.160 4.160 19 C -0.175 4.175 20 C 0.056 3.944 21 H 0.146 0.854 22 C -0.011 4.011 23 N -0.306 5.306 24 C -0.353 4.353 25 H 0.095 0.905 26 C -0.201 4.201 27 N -0.561 5.561 28 Si 0.744 3.256 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.942 14.343 -9.365 18.483 hybrid contribution -0.295 -0.996 1.010 1.449 sum 6.647 13.347 -8.355 17.092 Atomic orbital electron populations 1.20345 0.86146 1.03977 1.03567 1.23401 0.98840 0.88408 1.02451 1.73825 0.89316 1.24003 1.20557 1.84783 1.21653 1.22560 1.68147 1.24243 0.98258 0.83732 1.03471 1.20351 0.89989 0.98741 1.04086 1.21049 0.91488 0.97512 1.09219 1.19170 0.99452 0.87557 0.95126 0.89202 1.21967 0.99086 1.04011 0.95478 1.21759 1.01481 0.94663 0.99442 1.20360 0.78636 0.89967 0.81482 1.90607 1.53018 1.60244 1.39889 1.48556 1.49048 1.09832 1.25004 1.22762 0.97589 0.91772 0.90878 1.21945 0.91838 0.89208 0.94591 0.90543 1.22457 0.99513 0.97176 0.96887 1.22645 1.00116 0.95986 0.98787 1.22122 0.89800 0.99271 0.83255 0.85397 1.22421 0.99604 0.77888 1.01175 1.45197 1.80635 0.98585 1.06193 1.19035 1.35499 0.92682 0.88084 0.90456 1.24808 1.00151 0.96882 0.98301 1.69768 1.45717 1.06491 1.34171 0.86083 0.77946 0.78943 0.82640 1.21627 1.21722 1.20658 0.90003 0.90617 0.89536 0.89457 0.89926 0.88851 0.93134 0.89581 0.92966 0.89077 0.89451 0.91690 0.91444 0.92683 0.93121 0.92904 0.92916 0.90914 0.91215 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.22 36.01 0.33 -0.44 16 2 C 0.03 0.33 7.20 -82.10 -0.59 -0.27 16 3 N -0.37 -4.85 12.07 33.42 0.40 -4.45 16 4 O 0.09 1.12 11.20 17.18 0.19 1.31 16 5 C -0.03 -0.35 7.49 -35.30 -0.26 -0.61 16 6 C -0.07 -0.51 10.18 36.00 0.37 -0.14 16 7 C -0.19 -2.11 4.92 -104.42 -0.51 -2.63 16 8 C 0.01 0.07 2.32 -91.77 -0.21 -0.14 16 9 H 0.09 1.08 6.92 -51.93 -0.36 0.72 16 10 C -0.15 -1.74 8.70 37.16 0.32 -1.41 16 11 C -0.13 -1.64 3.39 -27.89 -0.09 -1.74 16 12 C 0.51 8.29 7.46 -10.99 -0.08 8.21 16 13 O -0.56 -10.53 13.46 5.56 0.07 -10.46 16 14 N -0.59 -10.51 2.26 -170.43 -0.39 -10.89 16 15 C 0.10 1.55 5.91 -2.51 -0.01 1.53 16 16 C 0.13 2.41 4.27 -65.64 -0.28 2.13 16 17 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.12 -2.00 6.19 -25.25 -0.16 -2.15 16 19 C -0.14 -2.54 6.18 -25.24 -0.16 -2.69 16 20 C 0.16 3.58 3.19 -65.61 -0.21 3.37 16 21 H 0.13 3.25 6.04 -51.93 -0.31 2.93 16 22 C 0.11 2.36 5.90 -3.17 -0.02 2.34 16 23 N -0.59 -13.36 2.81 -152.52 -0.43 -13.79 16 24 C -0.23 -5.72 10.39 -15.06 -0.16 -5.88 16 25 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 26 C 0.00 -0.12 5.45 -17.43 -0.10 -0.22 16 27 N -0.91 -24.67 10.55 55.49 0.59 -24.09 16 28 Si 0.91 20.89 29.56 -169.99 -5.02 15.86 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.75 5.21 -51.93 -0.27 0.48 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.62 7.36 -51.93 -0.38 0.23 16 38 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.09 1.20 6.15 -51.92 -0.32 0.88 16 40 H 0.05 0.56 5.79 -51.93 -0.30 0.26 16 41 H 0.09 1.01 5.98 -51.93 -0.31 0.70 16 42 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 43 H 0.06 0.83 6.13 -51.93 -0.32 0.51 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.73 7.86 -51.93 -0.41 0.33 16 47 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 48 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 49 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 50 H 0.07 1.49 7.11 -51.93 -0.37 1.12 16 51 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -29.50 389.59 -8.49 -37.99 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.95 Total: 3.36 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.82 Total: -0.72 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.17 Total: -53.21 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.27 Total: -9.14 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.50 -8.49 -37.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029364983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.780 kcal (2) G-P(sol) polarization free energy of solvation -29.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds