Wall clock time and date at job start Wed Apr 1 2020 04:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30176 * 126.79843 * 2 1 4 4 O 1.20918 * 111.60117 * 179.97438 * 3 2 1 5 5 C 1.34048 * 111.57174 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.77944 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.43755 * 359.74566 * 5 4 3 8 8 C 1.50709 * 128.00066 * 180.23393 * 7 5 4 9 9 H 1.08994 * 109.46606 * 180.16107 * 8 7 5 10 10 C 1.52995 * 109.47274 * 300.16584 * 8 7 5 11 11 C 1.52999 * 109.46762 * 60.16834 * 8 7 5 12 12 C 1.50709 * 109.46911 * 174.99756 * 11 8 7 13 13 O 1.21282 * 119.99428 * 0.02562 * 12 11 8 14 14 N 1.34770 * 120.00082 * 179.97438 * 12 11 8 15 15 C 1.47157 * 120.70902 * 179.97438 * 14 12 11 16 16 C 1.53888 * 108.03133 * 132.76294 * 15 14 12 17 17 H 1.09001 * 112.09700 * 181.91518 * 16 15 14 18 18 C 1.54552 * 107.82746 * 305.86828 * 16 15 14 19 19 C 1.55857 * 104.09003 * 89.27888 * 18 16 15 20 20 C 1.54541 * 105.00617 * 359.97438 * 19 18 16 21 21 H 1.08997 * 112.18854 * 146.42085 * 20 19 18 22 22 C 1.47164 * 120.71032 * 359.72673 * 14 12 11 23 23 N 1.48310 * 107.20902 * 58.36003 * 16 15 14 24 24 C 1.36930 * 128.07616 * 106.70782 * 23 16 15 25 25 H 1.08002 * 120.00213 * 14.95295 * 24 23 16 26 26 C 1.38812 * 120.00189 * 194.96078 * 24 23 16 27 27 N 1.31617 * 119.99715 * 9.26957 * 26 24 23 28 28 Si 1.86801 * 120.00108 * 189.27766 * 26 24 23 29 29 H 1.48492 * 109.47114 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.47298 * 119.99796 * 28 26 24 31 31 H 1.48506 * 109.46738 * 239.99361 * 28 26 24 32 32 H 1.08999 * 109.47129 * 90.02551 * 1 2 3 33 33 H 1.09002 * 109.46909 * 210.02135 * 1 2 3 34 34 H 1.08993 * 109.47120 * 330.02254 * 1 2 3 35 35 H 1.09000 * 109.47239 * 359.96956 * 6 5 4 36 36 H 1.08999 * 109.47221 * 119.97323 * 6 5 4 37 37 H 1.09005 * 109.46863 * 239.97291 * 6 5 4 38 38 H 1.09006 * 109.47070 * 60.00071 * 10 8 7 39 39 H 1.08996 * 109.46738 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.47293 * 300.00304 * 10 8 7 41 41 H 1.08998 * 109.47559 * 294.99304 * 11 8 7 42 42 H 1.09001 * 109.47700 * 54.99712 * 11 8 7 43 43 H 1.09008 * 109.75031 * 252.39180 * 15 14 12 44 44 H 1.08998 * 109.75352 * 13.07528 * 15 14 12 45 45 H 1.09000 * 110.36411 * 207.91350 * 18 16 15 46 46 H 1.08999 * 110.36129 * 330.23642 * 18 16 15 47 47 H 1.09004 * 110.28006 * 241.09419 * 19 18 16 48 48 H 1.09001 * 110.38936 * 118.92945 * 19 18 16 49 49 H 1.08996 * 109.74911 * 346.87080 * 22 14 12 50 50 H 1.08997 * 109.75053 * 107.60435 * 22 14 12 51 51 H 0.97004 * 119.99896 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9022 -1.3695 0.0014 7 6 2.3539 -1.1320 0.0054 8 6 1.9591 -2.5864 0.0123 9 1 0.8722 -2.6677 0.0123 10 6 2.5221 -3.2736 -1.2333 11 6 2.5210 -3.2614 1.2652 12 6 2.0248 -4.6827 1.3354 13 8 1.2941 -5.1133 0.4684 14 7 2.3938 -5.4754 2.3609 15 6 1.9181 -6.8654 2.4453 16 6 3.1273 -7.7646 2.7574 17 1 2.8538 -8.8188 2.8017 18 6 4.2109 -7.4873 1.6908 19 6 5.0480 -6.3197 2.2949 20 6 4.3847 -6.0149 3.6571 21 1 5.1098 -5.6957 4.4057 22 6 3.2854 -4.9711 3.4175 23 7 3.7143 -7.2838 4.0317 24 6 3.6519 -7.8736 5.2658 25 1 3.3436 -8.9048 5.3566 26 6 3.9846 -7.1463 6.4004 27 7 4.1825 -5.8479 6.3151 28 14 4.1516 -8.0104 8.0481 29 1 3.8801 -9.4602 7.8765 30 1 5.5298 -7.8226 8.5681 31 1 3.1771 -7.4350 9.0097 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 5.7357 -0.6671 0.0018 36 1 4.9550 -1.9964 0.8915 37 1 4.9561 -1.9967 -0.8885 38 1 3.6091 -3.1922 -1.2332 39 1 2.2361 -4.3254 -1.2285 40 1 2.1218 -2.7927 -2.1258 41 1 3.6101 -3.2586 1.2220 42 1 2.1910 -2.7172 2.1501 43 1 1.1783 -6.9539 3.2409 44 1 1.4738 -7.1610 1.4949 45 1 4.8342 -8.3696 1.5451 46 1 3.7491 -7.1884 0.7498 47 1 5.0003 -5.4453 1.6458 48 1 6.0834 -6.6290 2.4378 49 1 3.7351 -4.0297 3.1018 50 1 2.7189 -4.8195 4.3363 51 1 4.4153 -5.3397 7.1079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029364984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:33 Heat of formation + Delta-G solvation = 49.761863 kcal Electronic energy + Delta-G solvation = -32598.315663 eV Core-core repulsion = 28501.626720 eV Total energy + Delta-G solvation = -4096.688944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.98078 -40.16973 -38.22769 -36.36775 -34.15900 -33.75047 -32.50700 -32.11434 -30.70208 -29.27593 -28.76578 -28.21841 -27.82958 -25.90824 -24.17719 -23.74313 -23.35716 -21.07657 -20.13669 -19.78911 -19.29284 -18.46818 -17.70326 -17.44681 -16.75063 -16.06680 -15.69447 -15.31331 -14.83785 -14.50819 -14.45379 -13.82555 -13.77812 -13.59223 -13.54378 -13.30336 -13.11669 -13.08140 -12.97981 -12.86050 -12.77348 -12.47488 -12.22423 -11.88884 -11.79477 -11.73774 -11.44224 -11.21566 -11.12924 -11.10449 -10.94191 -10.82055 -10.58586 -10.37076 -10.07825 -9.92401 -9.88928 -9.66574 -9.63418 -9.31515 -9.14013 -8.82791 -8.08466 -6.90678 -5.92007 -3.26019 1.39514 2.12891 3.03242 3.07076 3.30907 3.38414 3.39654 3.57296 4.10209 4.36254 4.36564 4.62753 4.76209 5.02054 5.05686 5.07563 5.15416 5.17923 5.25640 5.28092 5.32694 5.37629 5.46213 5.58596 5.58837 5.65729 5.68043 5.68726 5.75304 5.81214 5.84133 5.87276 5.93597 6.01045 6.04961 6.10771 6.23475 6.27714 6.34798 6.42518 6.47298 6.56574 6.59303 6.67556 6.82789 6.92941 7.20210 7.40810 7.60098 8.04090 8.08369 8.22291 8.66337 8.99231 9.61197 10.37504 11.21562 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.003018 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.075055 B = 9275.637194 C = 9812.152012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.028 4.028 6 C -0.080 4.080 7 C -0.190 4.190 8 C 0.007 3.993 9 H 0.089 0.911 10 C -0.151 4.151 11 C -0.134 4.134 12 C 0.510 3.490 13 O -0.563 6.563 14 N -0.590 5.590 15 C 0.102 3.898 16 C 0.133 3.867 17 H 0.076 0.924 18 C -0.124 4.124 19 C -0.134 4.134 20 C 0.167 3.833 21 H 0.120 0.880 22 C 0.103 3.897 23 N -0.584 5.584 24 C -0.223 4.223 25 H 0.077 0.923 26 C -0.003 4.003 27 N -0.916 5.916 28 Si 0.912 3.088 29 H -0.280 1.280 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 7.739 -12.724 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.077 5.077 4 O 0.030 5.970 5 C -0.091 4.091 6 C -0.137 4.137 7 C -0.194 4.194 8 C -0.012 4.012 9 H 0.107 0.893 10 C -0.208 4.208 11 C -0.174 4.174 12 C 0.298 3.702 13 O -0.444 6.444 14 N -0.321 5.321 15 C -0.022 4.022 16 C 0.025 3.975 17 H 0.094 0.906 18 C -0.163 4.163 19 C -0.174 4.174 20 C 0.059 3.941 21 H 0.138 0.862 22 C -0.021 4.021 23 N -0.305 5.305 24 C -0.351 4.351 25 H 0.095 0.905 26 C -0.200 4.200 27 N -0.563 5.563 28 Si 0.742 3.258 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.890 8.842 -12.850 15.624 hybrid contribution -0.021 -0.958 1.091 1.452 sum -0.910 7.884 -11.760 14.187 Atomic orbital electron populations 1.20174 0.86122 1.03818 1.03300 1.23447 0.98871 0.88541 1.02706 1.73822 0.89337 1.23977 1.20602 1.84781 1.21600 1.22664 1.67985 1.24207 0.98254 0.83572 1.03074 1.20529 0.90016 0.98711 1.04470 1.21019 0.91562 0.97358 1.09450 1.19135 1.01440 0.85823 0.94839 0.89258 1.21983 1.00264 1.02676 0.95851 1.21749 1.02508 0.93805 0.99359 1.20387 0.80938 0.87465 0.81442 1.90591 1.38579 1.75884 1.39298 1.48217 1.47578 1.12538 1.23758 1.22339 0.97672 0.81342 1.00884 1.21961 0.91572 0.96227 0.87775 0.90574 1.22739 0.97802 0.98131 0.97648 1.22911 0.98806 0.97103 0.98551 1.21802 0.92954 0.86555 0.92756 0.86236 1.22527 0.93090 0.96821 0.89678 1.45160 1.58943 1.23278 1.03151 1.19064 1.40273 0.94348 0.81455 0.90509 1.24801 1.02244 0.95399 0.97566 1.69816 1.53230 1.04850 1.28357 0.86057 0.77382 0.78670 0.83680 1.20483 1.21665 1.21787 0.90252 0.89842 0.90637 0.89895 0.88789 0.88911 0.92978 0.89628 0.93098 0.88922 0.89158 0.92149 0.90717 0.92730 0.92539 0.93294 0.92765 0.92223 0.89943 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.26 36.01 0.37 -0.37 16 2 C 0.02 0.29 7.33 -82.10 -0.60 -0.31 16 3 N -0.37 -5.12 12.07 33.42 0.40 -4.71 16 4 O 0.09 1.21 11.20 17.16 0.19 1.40 16 5 C -0.03 -0.31 7.34 -35.30 -0.26 -0.57 16 6 C -0.08 -0.63 9.21 36.00 0.33 -0.29 16 7 C -0.19 -2.25 4.98 -104.42 -0.52 -2.77 16 8 C 0.01 0.08 2.31 -91.77 -0.21 -0.13 16 9 H 0.09 1.15 7.15 -51.93 -0.37 0.78 16 10 C -0.15 -1.74 8.81 37.16 0.33 -1.41 16 11 C -0.13 -1.73 3.39 -27.88 -0.09 -1.82 16 12 C 0.51 8.27 7.42 -10.98 -0.08 8.19 16 13 O -0.56 -10.25 13.43 5.56 0.07 -10.18 16 14 N -0.59 -10.38 2.26 -171.79 -0.39 -10.77 16 15 C 0.10 1.89 5.89 -3.22 -0.02 1.87 16 16 C 0.13 2.54 4.27 -65.66 -0.28 2.26 16 17 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 18 C -0.12 -2.10 6.31 -24.39 -0.15 -2.25 16 19 C -0.13 -2.31 6.22 -24.40 -0.15 -2.46 16 20 C 0.17 3.41 3.12 -65.87 -0.21 3.21 16 21 H 0.12 2.79 6.36 -51.93 -0.33 2.46 16 22 C 0.10 1.91 5.67 -3.44 -0.02 1.89 16 23 N -0.58 -13.19 2.81 -152.83 -0.43 -13.62 16 24 C -0.22 -5.64 10.37 -15.06 -0.16 -5.80 16 25 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 26 C 0.00 -0.08 5.42 -17.43 -0.09 -0.18 16 27 N -0.92 -23.79 10.42 55.49 0.58 -23.22 16 28 Si 0.91 20.61 29.56 -169.99 -5.03 15.58 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 31 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.75 7.54 -51.93 -0.39 0.36 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.71 6.44 -51.93 -0.33 0.37 16 37 H 0.09 0.63 6.35 -51.93 -0.33 0.30 16 38 H 0.05 0.52 5.69 -51.93 -0.30 0.22 16 39 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.06 5.33 -51.93 -0.28 0.78 16 42 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 43 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 44 H 0.07 1.33 7.11 -51.93 -0.37 0.96 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 47 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 0.94 6.09 -51.93 -0.32 0.62 16 50 H 0.08 1.82 7.83 -51.93 -0.41 1.41 16 51 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -28.66 388.25 -8.46 -37.12 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.89 Total: 3.50 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.82 Total: -0.96 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.16 Total: -52.32 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.27 Total: -8.78 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.66 -8.46 -37.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029364984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.883 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds