Wall clock time and date at job start Wed Apr 1 2020 04:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30176 * 126.79843 * 2 1 4 4 O 1.20918 * 111.60117 * 179.97438 * 3 2 1 5 5 C 1.34048 * 111.57174 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.77944 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.43755 * 359.74566 * 5 4 3 8 8 C 1.50709 * 128.00066 * 180.23393 * 7 5 4 9 9 H 1.08994 * 109.46606 * 180.16107 * 8 7 5 10 10 C 1.52995 * 109.47274 * 300.16584 * 8 7 5 11 11 C 1.52999 * 109.46762 * 60.16834 * 8 7 5 12 12 C 1.50709 * 109.46911 * 174.99756 * 11 8 7 13 13 O 1.21282 * 119.99428 * 0.02562 * 12 11 8 14 14 N 1.34770 * 120.00082 * 179.97438 * 12 11 8 15 15 C 1.47157 * 120.70902 * 179.97438 * 14 12 11 16 16 C 1.53888 * 108.03133 * 132.76294 * 15 14 12 17 17 H 1.09001 * 112.09700 * 181.91518 * 16 15 14 18 18 C 1.54552 * 107.82746 * 305.86828 * 16 15 14 19 19 C 1.55857 * 104.09003 * 89.27888 * 18 16 15 20 20 C 1.54541 * 105.00617 * 359.97438 * 19 18 16 21 21 H 1.08997 * 112.18854 * 146.42085 * 20 19 18 22 22 C 1.47164 * 120.71032 * 359.72673 * 14 12 11 23 23 N 1.48310 * 107.20902 * 58.36003 * 16 15 14 24 24 C 1.36930 * 128.07616 * 106.70782 * 23 16 15 25 25 H 1.08002 * 120.00213 * 14.95295 * 24 23 16 26 26 C 1.38812 * 120.00189 * 194.96078 * 24 23 16 27 27 N 1.31617 * 119.99715 * 9.26957 * 26 24 23 28 28 Si 1.86801 * 120.00108 * 189.27766 * 26 24 23 29 29 H 1.48492 * 109.47114 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.47298 * 119.99796 * 28 26 24 31 31 H 1.48506 * 109.46738 * 239.99361 * 28 26 24 32 32 H 1.08999 * 109.47129 * 90.02551 * 1 2 3 33 33 H 1.09002 * 109.46909 * 210.02135 * 1 2 3 34 34 H 1.08993 * 109.47120 * 330.02254 * 1 2 3 35 35 H 1.09000 * 109.47239 * 359.96956 * 6 5 4 36 36 H 1.08999 * 109.47221 * 119.97323 * 6 5 4 37 37 H 1.09005 * 109.46863 * 239.97291 * 6 5 4 38 38 H 1.09006 * 109.47070 * 60.00071 * 10 8 7 39 39 H 1.08996 * 109.46738 * 180.02562 * 10 8 7 40 40 H 1.08998 * 109.47293 * 300.00304 * 10 8 7 41 41 H 1.08998 * 109.47559 * 294.99304 * 11 8 7 42 42 H 1.09001 * 109.47700 * 54.99712 * 11 8 7 43 43 H 1.09008 * 109.75031 * 252.39180 * 15 14 12 44 44 H 1.08998 * 109.75352 * 13.07528 * 15 14 12 45 45 H 1.09000 * 110.36411 * 207.91350 * 18 16 15 46 46 H 1.08999 * 110.36129 * 330.23642 * 18 16 15 47 47 H 1.09004 * 110.28006 * 241.09419 * 19 18 16 48 48 H 1.09001 * 110.38936 * 118.92945 * 19 18 16 49 49 H 1.08996 * 109.74911 * 346.87080 * 22 14 12 50 50 H 1.08997 * 109.75053 * 107.60435 * 22 14 12 51 51 H 0.97004 * 119.99896 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9022 -1.3695 0.0014 7 6 2.3539 -1.1320 0.0054 8 6 1.9591 -2.5864 0.0123 9 1 0.8722 -2.6677 0.0123 10 6 2.5221 -3.2736 -1.2333 11 6 2.5210 -3.2614 1.2652 12 6 2.0248 -4.6827 1.3354 13 8 1.2941 -5.1133 0.4684 14 7 2.3938 -5.4754 2.3609 15 6 1.9181 -6.8654 2.4453 16 6 3.1273 -7.7646 2.7574 17 1 2.8538 -8.8188 2.8017 18 6 4.2109 -7.4873 1.6908 19 6 5.0480 -6.3197 2.2949 20 6 4.3847 -6.0149 3.6571 21 1 5.1098 -5.6957 4.4057 22 6 3.2854 -4.9711 3.4175 23 7 3.7143 -7.2838 4.0317 24 6 3.6519 -7.8736 5.2658 25 1 3.3436 -8.9048 5.3566 26 6 3.9846 -7.1463 6.4004 27 7 4.1825 -5.8479 6.3151 28 14 4.1516 -8.0104 8.0481 29 1 3.8801 -9.4602 7.8765 30 1 5.5298 -7.8226 8.5681 31 1 3.1771 -7.4350 9.0097 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5134 35 1 5.7357 -0.6671 0.0018 36 1 4.9550 -1.9964 0.8915 37 1 4.9561 -1.9967 -0.8885 38 1 3.6091 -3.1922 -1.2332 39 1 2.2361 -4.3254 -1.2285 40 1 2.1218 -2.7927 -2.1258 41 1 3.6101 -3.2586 1.2220 42 1 2.1910 -2.7172 2.1501 43 1 1.1783 -6.9539 3.2409 44 1 1.4738 -7.1610 1.4949 45 1 4.8342 -8.3696 1.5451 46 1 3.7491 -7.1884 0.7498 47 1 5.0003 -5.4453 1.6458 48 1 6.0834 -6.6290 2.4378 49 1 3.7351 -4.0297 3.1018 50 1 2.7189 -4.8195 4.3363 51 1 4.4153 -5.3397 7.1079 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029364984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:31 Heat of formation + Delta-G solvation = 36.199376 kcal Electronic energy + Delta-G solvation = -32598.903777 eV Core-core repulsion = 28501.626720 eV Total energy + Delta-G solvation = -4097.277057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.89684 -41.57867 -39.59996 -37.40299 -35.33060 -35.03693 -34.17961 -33.06407 -32.15485 -30.97414 -29.59974 -29.29514 -28.63265 -27.38747 -25.52735 -25.35130 -24.52936 -22.05647 -21.38146 -21.18075 -20.52766 -19.94917 -18.75537 -18.57548 -17.96353 -17.52182 -16.98625 -16.78101 -16.34014 -15.88054 -15.57845 -15.32963 -14.76254 -14.66763 -14.52121 -14.42874 -14.38808 -14.17338 -14.03357 -13.85666 -13.64638 -13.50631 -13.38205 -13.24213 -13.20708 -13.10271 -12.84766 -12.76962 -12.52964 -12.37710 -12.18973 -12.06251 -11.91337 -11.74640 -11.52440 -11.43004 -11.36853 -11.09082 -10.82550 -10.77872 -10.48243 -10.01966 -9.63386 -8.65831 -7.83974 -5.17147 0.52907 1.22244 1.48855 1.52258 1.59527 1.76334 2.15108 2.28248 2.52908 3.23928 3.36182 3.52713 3.54506 3.59927 3.79501 4.05945 4.09985 4.13633 4.22865 4.27010 4.28465 4.35924 4.41312 4.45372 4.52453 4.54756 4.62623 4.65106 4.71605 4.77396 4.79218 4.81236 4.86447 4.92325 4.94517 5.04184 5.07816 5.10650 5.13838 5.14714 5.21567 5.22132 5.37709 5.40594 5.41852 5.54439 5.58738 5.67814 5.89691 6.27477 6.67975 7.11837 7.31999 7.33648 7.75505 8.54624 9.27639 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.003018 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.075055 B = 9275.637194 C = 9812.152012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 N -0.399 5.399 4 O 0.083 5.917 5 C -0.017 4.017 6 C -0.084 4.084 7 C -0.204 4.204 8 C 0.017 3.983 9 H 0.077 0.923 10 C -0.146 4.146 11 C -0.128 4.128 12 C 0.512 3.488 13 O -0.579 6.579 14 N -0.593 5.593 15 C 0.109 3.891 16 C 0.128 3.872 17 H 0.077 0.923 18 C -0.112 4.112 19 C -0.124 4.124 20 C 0.161 3.839 21 H 0.088 0.912 22 C 0.118 3.882 23 N -0.606 5.606 24 C -0.232 4.232 25 H 0.072 0.928 26 C -0.049 4.049 27 N -0.931 5.931 28 Si 0.965 3.035 29 H -0.274 1.274 30 H -0.293 1.293 31 H -0.298 1.298 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.092 0.908 50 H 0.041 0.959 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 7.982 -14.364 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 N -0.108 5.108 4 O 0.021 5.979 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.208 4.208 8 C -0.003 4.003 9 H 0.096 0.904 10 C -0.203 4.203 11 C -0.168 4.168 12 C 0.302 3.698 13 O -0.460 6.460 14 N -0.324 5.324 15 C -0.016 4.016 16 C 0.020 3.980 17 H 0.095 0.905 18 C -0.151 4.151 19 C -0.163 4.163 20 C 0.054 3.946 21 H 0.106 0.894 22 C -0.006 4.006 23 N -0.328 5.328 24 C -0.361 4.361 25 H 0.090 0.910 26 C -0.243 4.243 27 N -0.579 5.579 28 Si 0.795 3.205 29 H -0.199 1.199 30 H -0.220 1.220 31 H -0.226 1.226 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.110 0.890 50 H 0.060 0.940 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.113 9.083 -14.526 17.132 hybrid contribution -0.382 -1.052 1.560 1.919 sum -0.269 8.031 -12.966 15.254 Atomic orbital electron populations 1.20273 0.84759 1.04228 1.04245 1.23910 1.00029 0.88597 1.01885 1.73821 0.89844 1.24869 1.22242 1.84751 1.21340 1.23609 1.68224 1.24792 0.99294 0.82997 1.01001 1.20759 0.88851 0.99038 1.05440 1.20989 0.91941 0.96979 1.10863 1.18988 1.00737 0.85913 0.94621 0.90431 1.21926 1.01529 1.01171 0.95702 1.21765 1.03799 0.91229 0.99964 1.20901 0.80158 0.88338 0.80374 1.90596 1.39169 1.76494 1.39789 1.48196 1.47843 1.12342 1.24034 1.22138 0.96921 0.82210 1.00319 1.22128 0.92425 0.96344 0.87093 0.90534 1.22642 0.96958 0.98470 0.97049 1.22817 0.98475 0.98260 0.96788 1.21768 0.92977 0.86166 0.93672 0.89425 1.22203 0.92152 0.97690 0.88580 1.45352 1.59831 1.24200 1.03370 1.19263 1.39534 0.94364 0.82971 0.91041 1.25381 1.02975 0.96058 0.99914 1.69962 1.54104 1.05491 1.28352 0.85216 0.76639 0.78047 0.80566 1.19876 1.21979 1.22556 0.89002 0.89397 0.90232 0.88200 0.87971 0.87380 0.91035 0.91635 0.92664 0.86686 0.89030 0.94639 0.89813 0.91837 0.91293 0.90575 0.92511 0.89021 0.94019 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.26 71.24 0.73 -0.69 16 2 C 0.01 0.34 7.33 43.58 0.32 0.65 16 3 N -0.40 -10.62 12.07 -49.57 -0.60 -11.21 16 4 O 0.08 2.00 11.20 71.56 0.80 2.80 16 5 C -0.02 -0.34 7.34 25.04 0.18 -0.16 16 6 C -0.08 -0.99 9.21 71.24 0.66 -0.34 16 7 C -0.20 -4.40 4.98 -19.73 -0.10 -4.50 16 8 C 0.02 0.37 2.31 -11.54 -0.03 0.34 16 9 H 0.08 1.88 7.15 -2.39 -0.02 1.86 16 10 C -0.15 -2.96 8.81 71.98 0.63 -2.32 16 11 C -0.13 -2.95 3.39 29.85 0.10 -2.84 16 12 C 0.51 15.57 7.42 87.66 0.65 16.23 16 13 O -0.58 -20.06 13.43 -3.04 -0.04 -20.10 16 14 N -0.59 -20.07 2.26 -815.81 -1.85 -21.92 16 15 C 0.11 3.98 5.89 86.55 0.51 4.49 16 16 C 0.13 4.76 4.27 45.47 0.19 4.95 16 17 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 18 C -0.11 -3.51 6.31 32.11 0.20 -3.31 16 19 C -0.12 -3.94 6.22 32.11 0.20 -3.74 16 20 C 0.16 6.48 3.12 45.32 0.14 6.62 16 21 H 0.09 4.12 6.36 -2.39 -0.02 4.11 16 22 C 0.12 4.27 5.67 86.41 0.49 4.76 16 23 N -0.61 -27.40 2.81 -637.42 -1.79 -29.19 16 24 C -0.23 -11.89 10.37 84.03 0.87 -11.01 16 25 H 0.07 3.62 7.85 -2.91 -0.02 3.60 16 26 C -0.05 -2.51 5.42 84.86 0.46 -2.05 16 27 N -0.93 -49.35 10.42 21.65 0.23 -49.13 16 28 Si 0.97 42.97 29.56 68.60 2.03 44.99 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 31 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.50 7.54 -2.39 -0.02 1.48 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.09 6.44 -2.39 -0.02 1.07 16 37 H 0.11 0.99 6.35 -2.38 -0.02 0.97 16 38 H 0.07 1.14 5.69 -2.38 -0.01 1.13 16 39 H 0.06 1.63 5.95 -2.39 -0.01 1.61 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.12 2.14 5.33 -2.39 -0.01 2.13 16 42 H 0.09 2.15 8.07 -2.39 -0.02 2.14 16 43 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.08 2.89 7.11 -2.39 -0.02 2.88 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 2.01 7.84 -2.39 -0.02 1.99 16 47 H 0.08 1.99 7.83 -2.39 -0.02 1.97 16 48 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 2.68 6.09 -2.39 -0.01 2.66 16 50 H 0.04 1.86 7.83 -2.39 -0.02 1.85 16 51 H 0.25 12.97 8.31 -92.70 -0.77 12.20 16 Total: -1.00 -62.74 388.25 5.94 -56.80 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.94 Total: 19.87 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.22 Total: 7.08 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.01 Total: -111.45 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.76 Total: -17.30 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -62.74 5.94 -56.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029364984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.002 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds