Wall clock time and date at job start Wed Apr 1 2020 04:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.80585 * 2 1 4 4 O 1.20911 * 111.60992 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56551 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.77865 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44791 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00991 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46651 * 90.00627 * 8 7 5 10 10 H 1.08997 * 109.47244 * 54.99986 * 9 8 7 11 11 C 1.53005 * 109.47258 * 294.99781 * 9 8 7 12 12 C 1.50699 * 109.46752 * 175.00075 * 9 8 7 13 13 O 1.21284 * 120.00285 * 9.62221 * 12 9 8 14 14 N 1.34777 * 119.99754 * 189.61808 * 12 9 8 15 15 C 1.47164 * 120.71393 * 3.25917 * 14 12 9 16 16 C 1.54319 * 107.80428 * 132.67718 * 15 14 12 17 17 H 1.09001 * 112.52914 * 182.38332 * 16 15 14 18 18 C 1.54541 * 107.98661 * 306.74188 * 16 15 14 19 19 C 1.54287 * 104.84788 * 89.01616 * 18 16 15 20 20 C 1.54548 * 104.84580 * 0.02562 * 19 18 16 21 21 H 1.09002 * 112.67654 * 146.68900 * 20 19 18 22 22 C 1.47168 * 120.71128 * 183.53564 * 14 12 9 23 23 N 1.48304 * 104.35975 * 24.69986 * 20 19 18 24 24 C 1.36935 * 128.07694 * 139.07887 * 23 20 19 25 25 H 1.08000 * 120.00004 * 345.79238 * 24 23 20 26 26 C 1.38814 * 120.00121 * 165.79258 * 24 23 20 27 27 N 1.31618 * 119.99578 * 349.02624 * 26 24 23 28 28 Si 1.86800 * 120.00125 * 169.02614 * 26 24 23 29 29 H 1.48496 * 109.47122 * 59.99958 * 28 26 24 30 30 H 1.48494 * 109.47100 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47065 * 299.99951 * 28 26 24 32 32 H 1.08999 * 109.46536 * 90.02858 * 1 2 3 33 33 H 1.08993 * 109.47436 * 210.02675 * 1 2 3 34 34 H 1.09000 * 109.47105 * 330.03702 * 1 2 3 35 35 H 1.09001 * 109.47064 * 0.02608 * 6 5 4 36 36 H 1.09003 * 109.47293 * 120.02580 * 6 5 4 37 37 H 1.08999 * 109.47417 * 240.02888 * 6 5 4 38 38 H 1.08994 * 109.46918 * 210.00355 * 8 7 5 39 39 H 1.09003 * 109.46835 * 330.00569 * 8 7 5 40 40 H 1.09006 * 109.46683 * 61.74337 * 11 9 8 41 41 H 1.08992 * 109.47407 * 181.74634 * 11 9 8 42 42 H 1.09005 * 109.46982 * 301.75131 * 11 9 8 43 43 H 1.08995 * 109.75188 * 252.38859 * 15 14 12 44 44 H 1.09004 * 109.74413 * 13.12156 * 15 14 12 45 45 H 1.08996 * 110.36615 * 207.85585 * 18 16 15 46 46 H 1.09001 * 110.36916 * 330.17646 * 18 16 15 47 47 H 1.09000 * 110.36237 * 241.16164 * 19 18 16 48 48 H 1.09001 * 110.36519 * 118.84566 * 19 18 16 49 49 H 1.09003 * 109.74585 * 346.87907 * 22 14 12 50 50 H 1.08992 * 109.75129 * 107.56271 * 22 14 12 51 51 H 0.97002 * 119.99468 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0015 6 6 4.9021 -1.3696 0.0018 7 6 2.3540 -1.1321 0.0021 8 6 1.9590 -2.5864 0.0038 9 6 1.8253 -3.0768 1.4469 10 1 1.1268 -2.4361 1.9851 11 6 3.1930 -3.0280 2.1310 12 6 1.3122 -4.4937 1.4504 13 8 1.2421 -5.1159 0.4117 14 7 0.9313 -5.0696 2.6079 15 6 0.9424 -4.3067 3.8663 16 6 -0.4043 -4.5521 4.5787 17 1 -0.4954 -3.9865 5.5060 18 6 -1.5384 -4.2241 3.5815 19 6 -1.8039 -5.5482 2.8352 20 6 -0.8065 -6.5560 3.4499 21 1 -1.2040 -7.5703 3.4885 22 6 0.5011 -6.4766 2.6414 23 7 -0.5214 -6.0141 4.8006 24 6 -0.3953 -6.7026 5.9775 25 1 -0.7268 -7.7285 6.0411 26 6 0.1586 -6.0820 7.0888 27 7 0.7571 -4.9167 6.9617 28 14 0.0545 -6.9008 8.7646 29 1 0.7346 -8.2199 8.7142 30 1 0.7175 -6.0410 9.7776 31 1 -1.3710 -7.0926 9.1341 32 1 -0.3632 -0.0005 -1.0277 33 1 -0.3634 -0.8897 0.5142 34 1 -0.3633 0.8903 0.5133 35 1 5.7357 -0.6672 0.0015 36 1 4.9554 -1.9964 0.8920 37 1 4.9555 -1.9970 -0.8880 38 1 1.0050 -2.7044 -0.5099 39 1 2.7228 -3.1709 -0.5093 40 1 3.5502 -1.9984 2.1560 41 1 3.1037 -3.4064 3.1492 42 1 3.8996 -3.6442 1.5749 43 1 1.7636 -4.6478 4.4966 44 1 1.0585 -3.2443 3.6519 45 1 -2.4328 -3.9041 4.1160 46 1 -1.2171 -3.4524 2.8819 47 1 -1.6130 -5.4274 1.7689 48 1 -2.8289 -5.8791 3.0029 49 1 0.3287 -6.8333 1.6260 50 1 1.2684 -7.0850 3.1201 51 1 1.1445 -4.4832 7.7382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029505563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:31 Heat of formation + Delta-G solvation = 49.467837 kcal Electronic energy + Delta-G solvation = -32749.742136 eV Core-core repulsion = 28653.040442 eV Total energy + Delta-G solvation = -4096.701694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.98390 -40.24827 -38.16502 -36.18298 -34.21204 -33.77688 -32.80527 -32.24111 -30.54215 -29.29899 -28.86433 -28.72537 -26.54748 -26.36516 -24.35823 -23.76729 -23.09572 -21.25738 -20.20773 -19.74903 -19.33918 -18.49942 -17.76194 -17.29167 -16.80807 -16.03541 -15.68927 -15.26380 -14.76369 -14.65086 -14.21286 -14.14676 -13.76768 -13.74578 -13.49399 -13.18027 -13.06830 -13.02613 -12.93835 -12.78660 -12.58343 -12.47608 -12.22188 -11.83234 -11.74197 -11.73015 -11.62707 -11.34457 -11.25414 -11.03843 -10.92706 -10.81566 -10.74769 -10.40817 -10.11740 -9.89248 -9.87689 -9.64475 -9.59984 -9.33201 -9.10318 -8.79840 -8.08281 -6.90152 -5.91063 -3.24108 1.38704 2.12366 3.03444 3.06985 3.32598 3.38360 3.38751 3.57767 4.11785 4.36992 4.37636 4.66325 4.77256 4.91331 5.06935 5.09420 5.14981 5.21367 5.22211 5.27555 5.37357 5.39735 5.43117 5.55538 5.63302 5.64315 5.68676 5.72663 5.75065 5.79137 5.84264 5.88608 5.94849 5.97070 6.05641 6.10156 6.21356 6.22707 6.28416 6.36299 6.50081 6.57507 6.61378 6.68702 6.84503 6.92919 7.20756 7.41105 7.60372 8.04648 8.08896 8.22592 8.65932 8.99902 9.62284 10.38717 11.22548 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003091 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.961820 B = 9057.686512 C = 9451.834102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.031 4.031 6 C -0.082 4.082 7 C -0.191 4.191 8 C -0.019 4.019 9 C -0.102 4.102 10 H 0.093 0.907 11 C -0.150 4.150 12 C 0.513 3.487 13 O -0.566 6.566 14 N -0.588 5.588 15 C 0.104 3.896 16 C 0.167 3.833 17 H 0.118 0.882 18 C -0.135 4.135 19 C -0.123 4.123 20 C 0.134 3.866 21 H 0.077 0.923 22 C 0.101 3.899 23 N -0.584 5.584 24 C -0.226 4.226 25 H 0.076 0.924 26 C -0.002 4.002 27 N -0.916 5.916 28 Si 0.911 3.089 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 7.147 -12.306 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.076 5.076 4 O 0.029 5.971 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.195 4.195 8 C -0.057 4.057 9 C -0.124 4.124 10 H 0.111 0.889 11 C -0.207 4.207 12 C 0.300 3.700 13 O -0.446 6.446 14 N -0.319 5.319 15 C -0.020 4.020 16 C 0.059 3.941 17 H 0.136 0.864 18 C -0.174 4.174 19 C -0.162 4.162 20 C 0.025 3.975 21 H 0.095 0.905 22 C -0.023 4.023 23 N -0.305 5.305 24 C -0.353 4.353 25 H 0.094 0.906 26 C -0.199 4.199 27 N -0.562 5.562 28 Si 0.742 3.258 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.620 8.134 -12.526 15.368 hybrid contribution -0.043 -1.074 1.002 1.470 sum 3.577 7.061 -11.524 13.980 Atomic orbital electron populations 1.20184 0.86035 1.03965 1.03312 1.23468 0.98913 0.88517 1.02571 1.73816 0.89314 1.23997 1.20521 1.84782 1.21647 1.22612 1.68044 1.24217 0.98247 0.83661 1.03306 1.20547 0.89945 0.98740 1.04709 1.20982 0.91539 0.97565 1.09407 1.19666 1.03214 0.87233 0.95637 1.21212 0.99308 0.94574 0.97263 0.88858 1.21994 0.94934 1.02212 1.01574 1.20399 0.77790 0.88345 0.83439 1.90620 1.56822 1.65454 1.31736 1.48196 1.63053 1.12628 1.08011 1.22742 1.02486 0.93373 0.83418 1.21960 0.88966 0.86993 0.96159 0.86404 1.22624 1.00076 0.96297 0.98396 1.22464 0.98856 0.96499 0.98402 1.21988 0.92206 0.96602 0.86659 0.90462 1.22361 0.98268 0.81357 1.00338 1.45170 1.82243 1.01590 1.01525 1.18973 1.33785 0.96450 0.86136 0.90599 1.24778 0.98900 0.97766 0.98481 1.69815 1.40260 1.16970 1.29144 0.86214 0.77659 0.78358 0.83606 1.21121 1.21592 1.21187 0.90254 0.89815 0.90528 0.90067 0.88481 0.89198 0.89985 0.89842 0.91707 0.90964 0.92083 0.89879 0.92066 0.92744 0.93290 0.92628 0.92768 0.90718 0.92086 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.01 0.37 -0.40 16 2 C 0.02 0.30 7.33 -82.10 -0.60 -0.30 16 3 N -0.37 -5.08 12.07 33.42 0.40 -4.67 16 4 O 0.09 1.18 11.20 17.17 0.19 1.37 16 5 C -0.03 -0.33 6.60 -35.30 -0.23 -0.57 16 6 C -0.08 -0.60 9.98 36.01 0.36 -0.24 16 7 C -0.19 -2.24 4.99 -104.42 -0.52 -2.76 16 8 C -0.02 -0.23 4.32 -27.88 -0.12 -0.35 16 9 C -0.10 -1.35 1.87 -91.77 -0.17 -1.52 16 10 H 0.09 1.23 6.92 -51.93 -0.36 0.87 16 11 C -0.15 -1.80 7.41 37.16 0.28 -1.52 16 12 C 0.51 8.53 6.97 -10.99 -0.08 8.46 16 13 O -0.57 -10.76 15.49 5.55 0.09 -10.67 16 14 N -0.59 -10.48 2.24 -171.22 -0.38 -10.86 16 15 C 0.10 1.94 4.37 -2.99 -0.01 1.93 16 16 C 0.17 3.49 3.13 -65.42 -0.20 3.28 16 17 H 0.12 2.81 6.37 -51.93 -0.33 2.48 16 18 C -0.13 -2.41 6.19 -25.25 -0.16 -2.57 16 19 C -0.12 -2.16 6.18 -25.24 -0.16 -2.31 16 20 C 0.13 2.59 4.32 -65.63 -0.28 2.31 16 21 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 22 C 0.10 1.89 5.91 -3.18 -0.02 1.88 16 23 N -0.58 -13.34 2.81 -152.30 -0.43 -13.76 16 24 C -0.23 -5.72 10.37 -15.06 -0.16 -5.88 16 25 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 26 C 0.00 -0.06 5.40 -17.43 -0.09 -0.15 16 27 N -0.92 -23.86 10.48 55.49 0.58 -23.27 16 28 Si 0.91 20.65 29.57 -169.99 -5.03 15.62 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 31 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.69 5.17 -51.93 -0.27 0.42 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 40 H 0.06 0.70 5.62 -51.93 -0.29 0.40 16 41 H 0.07 0.98 6.24 -51.93 -0.32 0.65 16 42 H 0.06 0.68 7.61 -51.93 -0.40 0.29 16 43 H 0.08 1.82 7.77 -51.93 -0.40 1.41 16 44 H 0.06 1.01 5.39 -51.93 -0.28 0.73 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 47 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.07 1.36 7.09 -51.93 -0.37 0.99 16 50 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -28.93 390.34 -8.52 -37.44 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.03 Total: 3.64 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.80 Total: -0.73 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.17 Total: -52.57 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.28 Total: -9.30 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.93 -8.52 -37.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029505563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.910 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds