Wall clock time and date at job start Wed Apr 1 2020 04:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.80585 * 2 1 4 4 O 1.20911 * 111.60992 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56551 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.77865 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44791 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00991 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46651 * 90.00627 * 8 7 5 10 10 H 1.08997 * 109.47244 * 54.99986 * 9 8 7 11 11 C 1.53005 * 109.47258 * 294.99781 * 9 8 7 12 12 C 1.50699 * 109.46752 * 175.00075 * 9 8 7 13 13 O 1.21284 * 120.00285 * 9.62221 * 12 9 8 14 14 N 1.34777 * 119.99754 * 189.61808 * 12 9 8 15 15 C 1.47164 * 120.71393 * 3.25917 * 14 12 9 16 16 C 1.54319 * 107.80428 * 132.67718 * 15 14 12 17 17 H 1.09001 * 112.52914 * 182.38332 * 16 15 14 18 18 C 1.54541 * 107.98661 * 306.74188 * 16 15 14 19 19 C 1.54287 * 104.84788 * 89.01616 * 18 16 15 20 20 C 1.54548 * 104.84580 * 0.02562 * 19 18 16 21 21 H 1.09002 * 112.67654 * 146.68900 * 20 19 18 22 22 C 1.47168 * 120.71128 * 183.53564 * 14 12 9 23 23 N 1.48304 * 104.35975 * 24.69986 * 20 19 18 24 24 C 1.36935 * 128.07694 * 139.07887 * 23 20 19 25 25 H 1.08000 * 120.00004 * 345.79238 * 24 23 20 26 26 C 1.38814 * 120.00121 * 165.79258 * 24 23 20 27 27 N 1.31618 * 119.99578 * 349.02624 * 26 24 23 28 28 Si 1.86800 * 120.00125 * 169.02614 * 26 24 23 29 29 H 1.48496 * 109.47122 * 59.99958 * 28 26 24 30 30 H 1.48494 * 109.47100 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47065 * 299.99951 * 28 26 24 32 32 H 1.08999 * 109.46536 * 90.02858 * 1 2 3 33 33 H 1.08993 * 109.47436 * 210.02675 * 1 2 3 34 34 H 1.09000 * 109.47105 * 330.03702 * 1 2 3 35 35 H 1.09001 * 109.47064 * 0.02608 * 6 5 4 36 36 H 1.09003 * 109.47293 * 120.02580 * 6 5 4 37 37 H 1.08999 * 109.47417 * 240.02888 * 6 5 4 38 38 H 1.08994 * 109.46918 * 210.00355 * 8 7 5 39 39 H 1.09003 * 109.46835 * 330.00569 * 8 7 5 40 40 H 1.09006 * 109.46683 * 61.74337 * 11 9 8 41 41 H 1.08992 * 109.47407 * 181.74634 * 11 9 8 42 42 H 1.09005 * 109.46982 * 301.75131 * 11 9 8 43 43 H 1.08995 * 109.75188 * 252.38859 * 15 14 12 44 44 H 1.09004 * 109.74413 * 13.12156 * 15 14 12 45 45 H 1.08996 * 110.36615 * 207.85585 * 18 16 15 46 46 H 1.09001 * 110.36916 * 330.17646 * 18 16 15 47 47 H 1.09000 * 110.36237 * 241.16164 * 19 18 16 48 48 H 1.09001 * 110.36519 * 118.84566 * 19 18 16 49 49 H 1.09003 * 109.74585 * 346.87907 * 22 14 12 50 50 H 1.08992 * 109.75129 * 107.56271 * 22 14 12 51 51 H 0.97002 * 119.99468 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0015 6 6 4.9021 -1.3696 0.0018 7 6 2.3540 -1.1321 0.0021 8 6 1.9590 -2.5864 0.0038 9 6 1.8253 -3.0768 1.4469 10 1 1.1268 -2.4361 1.9851 11 6 3.1930 -3.0280 2.1310 12 6 1.3122 -4.4937 1.4504 13 8 1.2421 -5.1159 0.4117 14 7 0.9313 -5.0696 2.6079 15 6 0.9424 -4.3067 3.8663 16 6 -0.4043 -4.5521 4.5787 17 1 -0.4954 -3.9865 5.5060 18 6 -1.5384 -4.2241 3.5815 19 6 -1.8039 -5.5482 2.8352 20 6 -0.8065 -6.5560 3.4499 21 1 -1.2040 -7.5703 3.4885 22 6 0.5011 -6.4766 2.6414 23 7 -0.5214 -6.0141 4.8006 24 6 -0.3953 -6.7026 5.9775 25 1 -0.7268 -7.7285 6.0411 26 6 0.1586 -6.0820 7.0888 27 7 0.7571 -4.9167 6.9617 28 14 0.0545 -6.9008 8.7646 29 1 0.7346 -8.2199 8.7142 30 1 0.7175 -6.0410 9.7776 31 1 -1.3710 -7.0926 9.1341 32 1 -0.3632 -0.0005 -1.0277 33 1 -0.3634 -0.8897 0.5142 34 1 -0.3633 0.8903 0.5133 35 1 5.7357 -0.6672 0.0015 36 1 4.9554 -1.9964 0.8920 37 1 4.9555 -1.9970 -0.8880 38 1 1.0050 -2.7044 -0.5099 39 1 2.7228 -3.1709 -0.5093 40 1 3.5502 -1.9984 2.1560 41 1 3.1037 -3.4064 3.1492 42 1 3.8996 -3.6442 1.5749 43 1 1.7636 -4.6478 4.4966 44 1 1.0585 -3.2443 3.6519 45 1 -2.4328 -3.9041 4.1160 46 1 -1.2171 -3.4524 2.8819 47 1 -1.6130 -5.4274 1.7689 48 1 -2.8289 -5.8791 3.0029 49 1 0.3287 -6.8333 1.6260 50 1 1.2684 -7.0850 3.1201 51 1 1.1445 -4.4832 7.7382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029505563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:29 Heat of formation + Delta-G solvation = 35.735087 kcal Electronic energy + Delta-G solvation = -32750.337633 eV Core-core repulsion = 28653.040442 eV Total energy + Delta-G solvation = -4097.297190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.89148 -41.68886 -39.60123 -37.22644 -35.44144 -35.03237 -34.28828 -33.45780 -32.05416 -31.02783 -29.69549 -29.56339 -27.92913 -27.36940 -25.88900 -25.35863 -24.36946 -22.31632 -21.31694 -21.09373 -20.74180 -20.02020 -18.81936 -18.51964 -17.90575 -17.51513 -17.10382 -16.74254 -16.35750 -15.80064 -15.62804 -15.20874 -14.99288 -14.83595 -14.66799 -14.38041 -14.30224 -14.19139 -14.05924 -13.73745 -13.53710 -13.45197 -13.37833 -13.20874 -13.14946 -12.96180 -12.89212 -12.79684 -12.68988 -12.55863 -12.36292 -12.10076 -11.98154 -11.82059 -11.70675 -11.46273 -11.39989 -11.10456 -10.84458 -10.75517 -10.48482 -10.00533 -9.66655 -8.67874 -7.84281 -5.16964 0.52828 1.22077 1.50803 1.52371 1.57712 1.72182 2.14631 2.27346 2.52920 3.25234 3.35409 3.48980 3.54520 3.58691 3.82222 3.92584 4.11343 4.12739 4.17544 4.22902 4.24133 4.31113 4.35402 4.43425 4.49255 4.63538 4.65786 4.68158 4.69563 4.73797 4.77684 4.81232 4.83799 4.88073 4.92936 4.98085 5.00604 5.05892 5.09390 5.11644 5.16296 5.19442 5.28736 5.36032 5.37755 5.39520 5.56617 5.63900 5.85953 6.25009 6.64395 7.10101 7.27132 7.34727 7.74548 8.53729 9.27296 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003091 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.961820 B = 9057.686512 C = 9451.834102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 N -0.399 5.399 4 O 0.083 5.917 5 C -0.020 4.020 6 C -0.085 4.085 7 C -0.205 4.205 8 C -0.007 4.007 9 C -0.095 4.095 10 H 0.097 0.903 11 C -0.145 4.145 12 C 0.516 3.484 13 O -0.585 6.585 14 N -0.590 5.590 15 C 0.123 3.877 16 C 0.161 3.839 17 H 0.085 0.915 18 C -0.126 4.126 19 C -0.112 4.112 20 C 0.129 3.871 21 H 0.081 0.919 22 C 0.108 3.892 23 N -0.604 5.604 24 C -0.236 4.236 25 H 0.073 0.927 26 C -0.047 4.047 27 N -0.931 5.931 28 Si 0.966 3.034 29 H -0.283 1.283 30 H -0.295 1.295 31 H -0.284 1.284 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.041 0.959 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 7.504 -13.614 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.107 5.107 4 O 0.021 5.979 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.209 4.209 8 C -0.045 4.045 9 C -0.116 4.116 10 H 0.115 0.885 11 C -0.202 4.202 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.321 5.321 15 C -0.001 4.001 16 C 0.053 3.947 17 H 0.103 0.897 18 C -0.165 4.165 19 C -0.151 4.151 20 C 0.021 3.979 21 H 0.099 0.901 22 C -0.017 4.017 23 N -0.326 5.326 24 C -0.365 4.365 25 H 0.091 0.909 26 C -0.242 4.242 27 N -0.578 5.578 28 Si 0.796 3.204 29 H -0.210 1.210 30 H -0.222 1.222 31 H -0.211 1.211 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.059 0.941 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.740 8.491 -13.864 16.682 hybrid contribution -0.052 -1.223 1.355 1.826 sum 3.688 7.268 -12.509 14.929 Atomic orbital electron populations 1.20285 0.84707 1.04360 1.04260 1.23906 1.00001 0.88530 1.01699 1.73817 0.89832 1.24908 1.22183 1.84755 1.21384 1.23525 1.68281 1.24808 0.99321 0.83090 1.01123 1.20752 0.88813 0.99001 1.05574 1.20945 0.91903 0.97146 1.10903 1.19517 1.03189 0.87390 0.94440 1.21210 0.99804 0.92050 0.98572 0.88476 1.21973 0.94490 1.03309 1.00463 1.20929 0.76729 0.89394 0.82422 1.90614 1.57421 1.66358 1.32243 1.48174 1.63563 1.12218 1.08140 1.22361 1.00029 0.94506 0.83181 1.21922 0.91127 0.85785 0.95841 0.89672 1.22536 0.98904 0.97094 0.97956 1.22366 0.98719 0.95434 0.98563 1.22156 0.93025 0.97372 0.85303 0.90119 1.22179 0.97333 0.81895 1.00302 1.45344 1.82512 1.02626 1.02125 1.19207 1.33232 0.96621 0.87462 0.90899 1.25375 0.99343 0.98536 1.00936 1.69967 1.40965 1.17763 1.29135 0.85355 0.77311 0.77392 0.80379 1.20953 1.22155 1.21093 0.89010 0.89258 0.90244 0.88326 0.87948 0.87689 0.90360 0.89506 0.90161 0.92688 0.91079 0.93350 0.89709 0.92594 0.91294 0.91619 0.91785 0.89848 0.94069 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.39 71.24 0.74 -0.69 16 2 C 0.02 0.40 7.33 43.58 0.32 0.72 16 3 N -0.40 -10.50 12.07 -49.56 -0.60 -11.09 16 4 O 0.08 1.97 11.20 71.62 0.80 2.77 16 5 C -0.02 -0.39 6.60 25.04 0.17 -0.22 16 6 C -0.08 -0.99 9.98 71.24 0.71 -0.28 16 7 C -0.20 -4.37 4.99 -19.73 -0.10 -4.47 16 8 C -0.01 -0.15 4.32 29.85 0.13 -0.03 16 9 C -0.10 -2.31 1.87 -11.54 -0.02 -2.33 16 10 H 0.10 2.32 6.92 -2.39 -0.02 2.31 16 11 C -0.15 -3.19 7.41 71.98 0.53 -2.66 16 12 C 0.52 16.23 6.97 87.66 0.61 16.84 16 13 O -0.58 -21.05 15.49 -3.04 -0.05 -21.10 16 14 N -0.59 -20.42 2.24 -814.01 -1.83 -22.25 16 15 C 0.12 4.59 4.37 86.70 0.38 4.97 16 16 C 0.16 6.70 3.13 45.61 0.14 6.84 16 17 H 0.09 4.15 6.37 -2.39 -0.02 4.13 16 18 C -0.13 -4.30 6.19 31.55 0.20 -4.10 16 19 C -0.11 -3.69 6.18 31.56 0.20 -3.50 16 20 C 0.13 4.90 4.32 45.49 0.20 5.10 16 21 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 22 C 0.11 3.96 5.91 86.57 0.51 4.48 16 23 N -0.60 -27.72 2.81 -635.75 -1.79 -29.50 16 24 C -0.24 -12.15 10.37 84.03 0.87 -11.28 16 25 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 26 C -0.05 -2.44 5.40 84.86 0.46 -1.98 16 27 N -0.93 -49.57 10.48 21.65 0.23 -49.34 16 28 Si 0.97 42.97 29.57 68.60 2.03 45.00 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 30 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 31 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.10 1.14 5.17 -2.39 -0.01 1.13 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.77 8.09 -2.39 -0.02 1.76 16 39 H 0.09 1.83 8.06 -2.39 -0.02 1.81 16 40 H 0.08 1.53 5.62 -2.38 -0.01 1.51 16 41 H 0.05 1.42 6.24 -2.39 -0.01 1.41 16 42 H 0.07 1.42 7.61 -2.38 -0.02 1.40 16 43 H 0.05 2.16 7.77 -2.39 -0.02 2.14 16 44 H 0.08 2.71 5.39 -2.38 -0.01 2.70 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.07 7.85 -2.39 -0.02 2.05 16 47 H 0.07 2.05 7.84 -2.39 -0.02 2.04 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.08 2.93 7.09 -2.39 -0.02 2.91 16 50 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -62.25 390.34 5.78 -56.47 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.94 Total: 21.65 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.04 Total: 7.40 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -3.98 Total: -112.19 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.75 Total: -18.33 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -62.25 5.78 -56.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029505563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.208 kcal (2) G-P(sol) polarization free energy of solvation -62.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds