Wall clock time and date at job start Wed Apr 1 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34265 * 126.52684 * 2 1 4 4 C 1.34050 * 108.22949 * 180.27086 * 3 2 1 5 5 C 1.50696 * 125.38155 * 179.69694 * 4 3 2 6 6 C 1.53003 * 109.47043 * 300.04119 * 5 4 3 7 7 C 1.53006 * 109.46864 * 60.03626 * 5 4 3 8 8 N 1.29940 * 109.23844 * 359.73090 * 4 3 2 9 9 C 1.36063 * 108.48254 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45129 * 179.97438 * 9 8 4 11 11 O 1.21608 * 120.00077 * 185.84529 * 10 9 8 12 12 N 1.34777 * 119.99836 * 5.84753 * 10 9 8 13 13 C 1.46894 * 120.46133 * 354.47318 * 12 10 9 14 14 C 1.53361 * 108.74092 * 124.38774 * 13 12 10 15 15 C 1.52550 * 109.12685 * 52.25988 * 14 13 12 16 16 C 1.52960 * 114.06679 * 75.53912 * 15 14 13 17 17 N 1.47161 * 87.85489 * 139.44007 * 16 15 14 18 18 C 1.36935 * 135.99825 * 153.08376 * 17 16 15 19 19 H 1.08007 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00009 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47030 * 120.00350 * 22 20 18 25 25 H 1.48506 * 109.47297 * 239.99658 * 22 20 18 26 26 C 1.47160 * 87.99810 * 333.33928 * 17 16 15 27 27 C 1.52551 * 113.43103 * 302.66471 * 15 14 13 28 28 C 1.46884 * 120.46138 * 174.49148 * 12 10 9 29 29 H 1.09005 * 109.46817 * 270.18550 * 1 2 3 30 30 H 1.08995 * 109.47694 * 30.18491 * 1 2 3 31 31 H 1.09003 * 109.47341 * 150.19102 * 1 2 3 32 32 H 1.08994 * 109.47245 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46962 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46833 * 300.00010 * 6 5 4 35 35 H 1.09002 * 109.47001 * 59.99564 * 6 5 4 36 36 H 1.08998 * 109.46868 * 60.00570 * 7 5 4 37 37 H 1.09004 * 109.47057 * 179.97438 * 7 5 4 38 38 H 1.08994 * 109.47523 * 300.00238 * 7 5 4 39 39 H 1.08999 * 109.59670 * 4.60876 * 13 12 10 40 40 H 1.09007 * 109.71352 * 244.23393 * 13 12 10 41 41 H 1.08996 * 109.52923 * 292.36069 * 14 13 12 42 42 H 1.09000 * 109.58149 * 172.18447 * 14 13 12 43 43 H 1.09000 * 113.48730 * 24.69354 * 16 15 14 44 44 H 1.08997 * 113.48912 * 254.19180 * 16 15 14 45 45 H 0.97003 * 120.00401 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.49105 * 141.41504 * 26 17 16 47 47 H 1.09007 * 113.48802 * 271.91980 * 26 17 16 48 48 H 1.09000 * 109.53092 * 177.21581 * 27 15 14 49 49 H 1.09000 * 109.53277 * 297.42995 * 27 15 14 50 50 H 1.08998 * 109.59370 * 355.38486 * 28 12 10 51 51 H 1.09004 * 109.58790 * 115.82426 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0060 5 6 4.7930 1.5507 -0.0146 6 6 4.7693 2.4318 -1.2652 7 6 4.7839 2.4360 1.2333 8 7 3.6002 -0.6411 -0.0040 9 6 2.3170 -1.0936 0.0029 10 6 1.8853 -2.5032 0.0068 11 8 0.7050 -2.7779 -0.0942 12 7 2.7989 -3.4874 0.1224 13 6 4.2341 -3.1748 0.1234 14 6 4.8631 -3.7517 1.3976 15 6 4.4937 -5.2272 1.5135 16 6 5.2714 -6.1413 0.5652 17 7 5.3690 -7.1105 1.6683 18 6 5.4990 -8.4693 1.7770 19 1 5.5526 -9.0796 0.8874 20 6 5.5610 -9.0626 3.0304 21 7 5.4952 -8.3190 4.1143 22 14 5.7376 -10.9163 3.1786 23 1 5.7893 -11.5186 1.8223 24 1 6.9893 -11.2373 3.9104 25 1 4.5752 -11.4666 3.9212 26 6 5.2591 -5.9794 2.6033 27 6 2.9888 -5.4769 1.5235 28 6 2.3731 -4.8875 0.2486 29 1 -0.3633 0.0033 1.0277 30 1 -0.3634 0.8882 -0.5167 31 1 -0.3634 -0.8917 -0.5109 32 1 5.6944 0.9379 -0.0186 33 1 5.6472 3.0778 -1.2712 34 1 4.7757 1.8012 -2.1542 35 1 3.8678 3.0446 -1.2609 36 1 4.8008 1.8083 2.1242 37 1 5.6623 3.0813 1.2273 38 1 3.8825 3.0487 1.2376 39 1 4.3729 -2.0939 0.1044 40 1 4.7080 -3.6196 -0.7517 41 1 4.4860 -3.2123 2.2665 42 1 5.9473 -3.6503 1.3481 43 1 6.2345 -5.7321 0.2600 44 1 4.6787 -6.4993 -0.2765 45 1 5.5388 -8.7334 4.9903 46 1 4.6559 -6.2007 3.4838 47 1 6.2188 -5.5262 2.8517 48 1 2.7975 -6.5494 1.5582 49 1 2.5458 -4.9983 2.3969 50 1 1.2860 -4.9346 0.3122 51 1 2.7155 -5.4531 -0.6180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035707196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:51 Heat of formation + Delta-G solvation = 48.194434 kcal Electronic energy + Delta-G solvation = -31677.513812 eV Core-core repulsion = 27580.756900 eV Total energy + Delta-G solvation = -4096.756913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.73641 -40.14636 -38.68153 -36.23715 -35.74246 -35.01482 -32.44597 -32.18041 -30.84291 -30.42865 -27.68511 -27.66390 -26.71253 -24.90341 -24.36404 -23.44961 -23.11051 -22.41048 -21.45572 -20.86075 -19.22604 -17.91402 -17.19633 -16.87163 -16.62761 -16.42461 -15.75822 -15.39595 -14.94184 -14.78980 -14.71683 -14.49119 -13.97958 -13.82778 -13.74331 -13.59543 -13.42332 -13.18826 -12.99877 -12.97714 -12.67370 -12.44983 -12.34709 -12.06464 -12.00314 -11.80217 -11.54660 -11.51358 -11.43573 -11.14997 -10.93368 -10.81871 -10.78942 -10.50129 -10.25083 -10.08435 -9.92932 -9.66179 -9.15428 -9.12650 -8.99699 -8.75313 -8.27212 -6.80304 -5.71596 -3.03070 0.91840 1.79412 2.20163 3.04739 3.28009 3.41347 3.46591 3.49190 3.52797 4.28590 4.42466 4.50291 4.53168 4.53636 4.76679 4.96132 5.11389 5.13245 5.14721 5.21245 5.23782 5.30626 5.32460 5.38522 5.40935 5.47961 5.53757 5.60064 5.62912 5.65992 5.71233 5.73049 5.77064 5.83612 5.96967 6.04094 6.07378 6.32069 6.36812 6.45699 6.54357 6.59966 6.73857 6.77657 6.91340 7.00807 7.26423 7.29462 7.44716 7.60968 7.63562 8.03533 8.21057 9.09337 9.75823 10.72025 11.45952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002521 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.971136 B =11103.321130 C =12023.938074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 O -0.193 6.193 4 C 0.201 3.799 5 C 0.001 3.999 6 C -0.150 4.150 7 C -0.151 4.151 8 N -0.450 5.450 9 C -0.065 4.065 10 C 0.598 3.402 11 O -0.547 6.547 12 N -0.582 5.582 13 C 0.062 3.938 14 C -0.108 4.108 15 C -0.116 4.116 16 C 0.128 3.872 17 N -0.609 5.609 18 C -0.213 4.213 19 H 0.080 0.920 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.167 3.833 27 C -0.092 4.092 28 C 0.113 3.887 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.150 0.850 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.035 0.965 45 H 0.252 0.748 46 H 0.069 0.931 47 H 0.023 0.977 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 25.355 -9.369 27.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 O -0.080 6.080 4 C -0.007 4.007 5 C -0.018 4.018 6 C -0.208 4.208 7 C -0.209 4.209 8 N -0.179 5.179 9 C -0.185 4.185 10 C 0.385 3.615 11 O -0.426 6.426 12 N -0.312 5.312 13 C -0.060 4.060 14 C -0.147 4.147 15 C -0.118 4.118 16 C 0.002 3.998 17 N -0.334 5.334 18 C -0.341 4.341 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.041 3.959 27 C -0.130 4.130 28 C -0.009 4.009 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.106 0.894 49 H 0.077 0.923 50 H 0.106 0.894 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.966 24.480 -9.261 26.640 hybrid contribution -0.022 -0.833 0.277 0.878 sum -4.988 23.647 -8.984 25.783 Atomic orbital electron populations 1.20609 0.82553 1.05448 1.04663 1.23695 0.95063 0.83157 1.00070 1.84289 1.17845 1.36190 1.69694 1.26421 0.84078 0.90427 0.99791 1.19829 0.89885 0.94388 0.97727 1.21901 1.03198 0.99549 0.96163 1.21907 1.03172 0.99552 0.96263 1.70312 1.20991 1.08019 1.18599 1.21533 0.88561 0.95674 1.12686 1.16769 0.85218 0.82505 0.77018 1.90738 1.16580 1.82957 1.52328 1.47907 1.07309 1.06573 1.69449 1.23051 0.78355 1.06707 0.97918 1.21653 1.00190 0.95631 0.97230 1.22103 0.95156 0.92775 1.01734 1.22383 0.95709 0.89364 0.92366 1.45571 1.85509 1.00542 1.01789 1.18969 1.43049 0.79536 0.92544 0.90247 1.24773 1.02718 0.97837 0.95268 1.69843 1.56630 1.33435 0.96789 0.86070 0.77300 0.85078 0.77480 1.20511 1.21841 1.21751 1.22032 0.95303 0.84794 0.93784 1.21401 0.93703 1.01956 0.95941 1.21766 1.00540 0.79649 0.98932 0.89110 0.90261 0.86707 0.86484 0.90692 0.91818 0.91858 0.91681 0.90682 0.91859 0.83424 0.92176 0.92307 0.91056 0.95271 0.94648 0.93815 0.91318 0.95964 0.89406 0.92273 0.89395 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.94 36.00 0.36 -0.32 16 2 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.19 -2.04 10.73 6.49 0.07 -1.97 16 4 C 0.20 2.04 6.81 -13.08 -0.09 1.95 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -0.76 9.18 37.16 0.34 -0.42 16 7 C -0.15 -0.82 9.18 37.16 0.34 -0.47 16 8 N -0.45 -5.65 7.66 -7.65 -0.06 -5.71 16 9 C -0.07 -0.90 6.75 -83.02 -0.56 -1.46 16 10 C 0.60 9.44 7.68 -12.52 -0.10 9.35 16 11 O -0.55 -9.36 14.19 5.27 0.07 -9.28 16 12 N -0.58 -9.15 2.94 -173.89 -0.51 -9.66 16 13 C 0.06 0.90 6.25 -3.64 -0.02 0.88 16 14 C -0.11 -1.72 5.30 -26.77 -0.14 -1.87 16 15 C -0.12 -2.22 0.84 -155.02 -0.13 -2.35 16 16 C 0.13 2.68 7.63 -8.22 -0.06 2.62 16 17 N -0.61 -15.82 3.55 -184.70 -0.66 -16.48 16 18 C -0.21 -6.07 10.74 -15.06 -0.16 -6.24 16 19 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -27.72 11.51 55.49 0.64 -27.08 16 22 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C 0.17 3.99 6.54 -8.23 -0.05 3.94 16 27 C -0.09 -1.69 5.27 -26.77 -0.14 -1.83 16 28 C 0.11 1.83 6.32 -3.65 -0.02 1.81 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 1.17 6.38 -51.93 -0.33 0.84 16 32 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.15 2.06 3.55 -82.69 -0.29 1.76 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 44 H 0.04 0.72 7.53 -51.93 -0.39 0.33 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 1.84 7.11 -51.93 -0.37 1.47 16 47 H 0.02 0.55 8.10 -51.92 -0.42 0.13 16 48 H 0.09 1.82 7.95 -51.93 -0.41 1.41 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.09 1.43 7.00 -51.93 -0.36 1.06 16 51 H 0.07 1.09 7.60 -51.93 -0.39 0.69 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -33.51 401.42 -8.96 -42.47 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.43 Total: -0.90 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.11 Total: 5.08 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.59 Total: -58.92 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.14 Total: -11.25 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.51 -8.96 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035707196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.665 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds