Wall clock time and date at job start Wed Apr 1 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34265 * 126.52684 * 2 1 4 4 C 1.34050 * 108.22949 * 180.27086 * 3 2 1 5 5 C 1.50696 * 125.38155 * 179.69694 * 4 3 2 6 6 C 1.53003 * 109.47043 * 300.04119 * 5 4 3 7 7 C 1.53006 * 109.46864 * 60.03626 * 5 4 3 8 8 N 1.29940 * 109.23844 * 359.73090 * 4 3 2 9 9 C 1.36063 * 108.48254 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45129 * 179.97438 * 9 8 4 11 11 O 1.21608 * 120.00077 * 185.84529 * 10 9 8 12 12 N 1.34777 * 119.99836 * 5.84753 * 10 9 8 13 13 C 1.46894 * 120.46133 * 354.47318 * 12 10 9 14 14 C 1.53361 * 108.74092 * 124.38774 * 13 12 10 15 15 C 1.52550 * 109.12685 * 52.25988 * 14 13 12 16 16 C 1.52960 * 114.06679 * 75.53912 * 15 14 13 17 17 N 1.47161 * 87.85489 * 139.44007 * 16 15 14 18 18 C 1.36935 * 135.99825 * 153.08376 * 17 16 15 19 19 H 1.08007 * 120.00345 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00009 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47030 * 120.00350 * 22 20 18 25 25 H 1.48506 * 109.47297 * 239.99658 * 22 20 18 26 26 C 1.47160 * 87.99810 * 333.33928 * 17 16 15 27 27 C 1.52551 * 113.43103 * 302.66471 * 15 14 13 28 28 C 1.46884 * 120.46138 * 174.49148 * 12 10 9 29 29 H 1.09005 * 109.46817 * 270.18550 * 1 2 3 30 30 H 1.08995 * 109.47694 * 30.18491 * 1 2 3 31 31 H 1.09003 * 109.47341 * 150.19102 * 1 2 3 32 32 H 1.08994 * 109.47245 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46962 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46833 * 300.00010 * 6 5 4 35 35 H 1.09002 * 109.47001 * 59.99564 * 6 5 4 36 36 H 1.08998 * 109.46868 * 60.00570 * 7 5 4 37 37 H 1.09004 * 109.47057 * 179.97438 * 7 5 4 38 38 H 1.08994 * 109.47523 * 300.00238 * 7 5 4 39 39 H 1.08999 * 109.59670 * 4.60876 * 13 12 10 40 40 H 1.09007 * 109.71352 * 244.23393 * 13 12 10 41 41 H 1.08996 * 109.52923 * 292.36069 * 14 13 12 42 42 H 1.09000 * 109.58149 * 172.18447 * 14 13 12 43 43 H 1.09000 * 113.48730 * 24.69354 * 16 15 14 44 44 H 1.08997 * 113.48912 * 254.19180 * 16 15 14 45 45 H 0.97003 * 120.00401 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.49105 * 141.41504 * 26 17 16 47 47 H 1.09007 * 113.48802 * 271.91980 * 26 17 16 48 48 H 1.09000 * 109.53092 * 177.21581 * 27 15 14 49 49 H 1.09000 * 109.53277 * 297.42995 * 27 15 14 50 50 H 1.08998 * 109.59370 * 355.38486 * 28 12 10 51 51 H 1.09004 * 109.58790 * 115.82426 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0060 5 6 4.7930 1.5507 -0.0146 6 6 4.7693 2.4318 -1.2652 7 6 4.7839 2.4360 1.2333 8 7 3.6002 -0.6411 -0.0040 9 6 2.3170 -1.0936 0.0029 10 6 1.8853 -2.5032 0.0068 11 8 0.7050 -2.7779 -0.0942 12 7 2.7989 -3.4874 0.1224 13 6 4.2341 -3.1748 0.1234 14 6 4.8631 -3.7517 1.3976 15 6 4.4937 -5.2272 1.5135 16 6 5.2714 -6.1413 0.5652 17 7 5.3690 -7.1105 1.6683 18 6 5.4990 -8.4693 1.7770 19 1 5.5526 -9.0796 0.8874 20 6 5.5610 -9.0626 3.0304 21 7 5.4952 -8.3190 4.1143 22 14 5.7376 -10.9163 3.1786 23 1 5.7893 -11.5186 1.8223 24 1 6.9893 -11.2373 3.9104 25 1 4.5752 -11.4666 3.9212 26 6 5.2591 -5.9794 2.6033 27 6 2.9888 -5.4769 1.5235 28 6 2.3731 -4.8875 0.2486 29 1 -0.3633 0.0033 1.0277 30 1 -0.3634 0.8882 -0.5167 31 1 -0.3634 -0.8917 -0.5109 32 1 5.6944 0.9379 -0.0186 33 1 5.6472 3.0778 -1.2712 34 1 4.7757 1.8012 -2.1542 35 1 3.8678 3.0446 -1.2609 36 1 4.8008 1.8083 2.1242 37 1 5.6623 3.0813 1.2273 38 1 3.8825 3.0487 1.2376 39 1 4.3729 -2.0939 0.1044 40 1 4.7080 -3.6196 -0.7517 41 1 4.4860 -3.2123 2.2665 42 1 5.9473 -3.6503 1.3481 43 1 6.2345 -5.7321 0.2600 44 1 4.6787 -6.4993 -0.2765 45 1 5.5388 -8.7334 4.9903 46 1 4.6559 -6.2007 3.4838 47 1 6.2188 -5.5262 2.8517 48 1 2.7975 -6.5494 1.5582 49 1 2.5458 -4.9983 2.3969 50 1 1.2860 -4.9346 0.3122 51 1 2.7155 -5.4531 -0.6180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035707196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:50 Heat of formation + Delta-G solvation = 27.562854 kcal Electronic energy + Delta-G solvation = -31678.408465 eV Core-core repulsion = 27580.756900 eV Total energy + Delta-G solvation = -4097.651565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.59882 -41.57649 -40.16111 -37.26558 -36.67129 -35.95220 -34.42468 -32.96571 -32.20713 -32.08857 -28.99317 -28.15628 -28.06511 -26.61267 -25.64770 -24.80404 -24.25857 -23.38361 -22.87219 -22.04669 -20.31605 -19.22566 -18.68617 -18.17976 -18.01662 -17.30709 -16.90067 -16.87839 -16.20563 -16.11501 -16.08764 -15.61984 -15.34550 -15.16164 -14.92326 -14.54855 -14.39423 -14.28955 -14.12020 -14.02750 -13.78638 -13.70698 -13.37169 -13.12423 -13.01465 -12.94323 -12.84804 -12.62739 -12.54593 -12.49589 -12.25353 -12.14584 -12.10451 -11.94460 -11.79644 -11.66431 -11.58880 -11.31138 -10.93562 -10.82587 -10.42377 -9.94905 -9.54932 -8.89878 -7.90060 -5.22794 0.00228 0.88581 1.40023 1.43878 1.45063 1.55324 1.90031 2.16357 2.46705 2.70537 3.31210 3.43495 3.46911 3.56987 3.58931 3.93483 3.94489 4.03429 4.08937 4.16750 4.18321 4.25417 4.34377 4.37138 4.44757 4.56726 4.61227 4.68197 4.73677 4.74657 4.79937 4.83489 4.86375 4.88373 4.91166 4.94346 5.01568 5.08824 5.11639 5.12380 5.17380 5.26504 5.31107 5.34580 5.34875 5.41648 5.55434 5.65428 5.81362 5.93883 6.26806 6.50347 6.91372 7.00886 7.60623 8.63331 9.27722 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.002521 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.971136 B =11103.321130 C =12023.938074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.046 3.954 3 O -0.189 6.189 4 C 0.211 3.789 5 C 0.000 4.000 6 C -0.146 4.146 7 C -0.148 4.148 8 N -0.472 5.472 9 C -0.098 4.098 10 C 0.595 3.405 11 O -0.566 6.566 12 N -0.588 5.588 13 C 0.069 3.931 14 C -0.099 4.099 15 C -0.090 4.090 16 C 0.132 3.868 17 N -0.638 5.638 18 C -0.224 4.224 19 H 0.084 0.916 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.164 3.836 27 C -0.085 4.085 28 C 0.124 3.876 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.163 0.837 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.247 0.753 46 H 0.031 0.969 47 H 0.015 0.985 48 H 0.059 0.941 49 H 0.053 0.947 50 H 0.087 0.913 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 27.540 -10.936 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.011 4.011 3 O -0.076 6.076 4 C 0.002 3.998 5 C -0.020 4.020 6 C -0.204 4.204 7 C -0.206 4.206 8 N -0.200 5.200 9 C -0.216 4.216 10 C 0.384 3.616 11 O -0.447 6.447 12 N -0.318 5.318 13 C -0.053 4.053 14 C -0.138 4.138 15 C -0.092 4.092 16 C 0.007 3.993 17 N -0.363 5.363 18 C -0.352 4.352 19 H 0.102 0.898 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.807 3.193 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.038 3.962 27 C -0.123 4.123 28 C 0.002 3.998 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.179 0.821 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.033 0.967 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.106 0.894 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.604 26.682 -10.867 29.176 hybrid contribution -0.136 -1.402 0.751 1.596 sum -4.739 25.280 -10.116 27.639 Atomic orbital electron populations 1.20701 0.80855 1.06096 1.05515 1.24109 0.96054 0.82807 0.98091 1.84332 1.18011 1.35685 1.69618 1.27208 0.84736 0.90224 0.97586 1.20120 0.88392 0.94391 0.99050 1.21897 1.04272 0.99353 0.94876 1.21907 1.04272 0.99368 0.95027 1.70110 1.20538 1.09259 1.20114 1.21336 0.89744 0.95022 1.15489 1.17046 0.84908 0.83351 0.76292 1.90719 1.17305 1.83522 1.53134 1.47950 1.07844 1.06208 1.69765 1.23116 0.77567 1.07584 0.97054 1.21597 1.01145 0.92870 0.98184 1.21889 0.94762 0.94444 0.98060 1.22515 0.96682 0.88309 0.91816 1.45900 1.85563 1.00622 1.04234 1.19357 1.41884 0.81179 0.92782 0.89837 1.25627 1.03244 1.02349 0.95026 1.70040 1.58187 1.35103 0.96963 0.85005 0.76692 0.79763 0.77862 1.18874 1.21978 1.21972 1.22002 0.95079 0.85445 0.93692 1.21273 0.93527 1.00301 0.97210 1.21560 1.00304 0.80316 0.97637 0.88025 0.87417 0.88156 0.85714 0.88468 0.92520 0.91918 0.92830 0.88439 0.91893 0.82129 0.91432 0.92456 0.89795 0.93686 0.93675 0.94430 0.95038 0.96717 0.92209 0.92797 0.89446 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 9.94 71.23 0.71 -0.50 16 2 C 0.05 1.00 7.44 25.19 0.19 1.19 16 3 O -0.19 -3.61 10.73 0.30 0.00 -3.60 16 4 C 0.21 3.87 6.81 88.39 0.60 4.47 16 5 C 0.00 0.00 3.39 -11.54 -0.04 -0.04 16 6 C -0.15 -1.06 9.18 71.98 0.66 -0.40 16 7 C -0.15 -1.21 9.18 71.98 0.66 -0.55 16 8 N -0.47 -11.10 7.66 -293.04 -2.25 -13.34 16 9 C -0.10 -2.58 6.75 40.41 0.27 -2.31 16 10 C 0.60 18.44 7.68 86.66 0.67 19.11 16 11 O -0.57 -19.23 14.19 -4.06 -0.06 -19.29 16 12 N -0.59 -17.97 2.94 -822.31 -2.42 -20.39 16 13 C 0.07 1.89 6.25 86.43 0.54 2.43 16 14 C -0.10 -3.05 5.30 30.57 0.16 -2.89 16 15 C -0.09 -3.45 0.84 -52.51 -0.04 -3.49 16 16 C 0.13 5.43 7.63 83.31 0.64 6.07 16 17 N -0.64 -33.68 3.55 -738.27 -2.62 -36.30 16 18 C -0.22 -12.91 10.74 84.03 0.90 -12.00 16 19 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 21 N -0.95 -59.39 11.51 21.65 0.25 -59.14 16 22 Si 0.98 47.01 29.55 68.60 2.03 49.04 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 C 0.16 8.08 6.54 83.31 0.55 8.63 16 27 C -0.08 -3.18 5.27 30.57 0.16 -3.02 16 28 C 0.12 3.98 6.32 86.43 0.55 4.53 16 29 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.96 6.38 -2.39 -0.02 1.95 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.16 4.19 3.55 -63.13 -0.22 3.97 16 40 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 2.40 8.10 -2.39 -0.02 2.38 16 43 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 44 H 0.04 1.77 7.53 -2.39 -0.02 1.76 16 45 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.03 1.77 7.11 -2.39 -0.02 1.75 16 47 H 0.02 0.75 8.10 -2.38 -0.02 0.74 16 48 H 0.06 2.57 7.95 -2.39 -0.02 2.56 16 49 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.09 2.84 7.00 -2.39 -0.02 2.82 16 51 H 0.08 2.33 7.60 -2.38 -0.02 2.31 16 Total: -1.00 -74.03 401.42 3.28 -70.75 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.71 Total: 14.67 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 7.63 Total: 17.60 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -7.03 Total: -129.18 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.03 3.28 -70.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035707196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.314 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds