Wall clock time and date at job start Wed Apr 1 2020 04:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30011 * 127.33354 * 2 1 4 4 O 1.20658 * 112.30194 * 180.27784 * 3 2 1 5 5 C 1.33493 * 113.15578 * 359.72025 * 4 3 2 6 6 C 1.50694 * 126.83238 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47165 * 300.00521 * 6 5 4 8 8 C 1.52997 * 109.47296 * 60.00363 * 6 5 4 9 9 C 1.37365 * 106.34102 * 0.02562 * 5 4 3 10 10 C 1.47399 * 128.56532 * 179.97438 * 9 5 4 11 11 O 1.21603 * 119.99907 * 90.00392 * 10 9 5 12 12 N 1.34775 * 119.99767 * 270.00022 * 10 9 5 13 13 C 1.46900 * 120.46117 * 180.02562 * 12 10 9 14 14 C 1.53349 * 108.74479 * 124.34262 * 13 12 10 15 15 C 1.52559 * 109.12733 * 52.25717 * 14 13 12 16 16 C 1.52963 * 114.05870 * 75.53963 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44344 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48498 * 109.46664 * 329.99449 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43531 * 302.67267 * 15 14 13 28 28 C 1.46887 * 120.46522 * 359.97438 * 12 10 9 29 29 H 1.09003 * 109.46866 * 270.15566 * 1 2 3 30 30 H 1.09000 * 109.47037 * 30.14990 * 1 2 3 31 31 H 1.08999 * 109.47045 * 150.15387 * 1 2 3 32 32 H 1.08999 * 109.47197 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47054 * 59.99485 * 7 6 5 34 34 H 1.08998 * 109.47514 * 179.97438 * 7 6 5 35 35 H 1.09007 * 109.46970 * 300.00139 * 7 6 5 36 36 H 1.08999 * 109.47284 * 300.00297 * 8 6 5 37 37 H 1.08999 * 109.46758 * 60.00162 * 8 6 5 38 38 H 1.08998 * 109.47323 * 180.02562 * 8 6 5 39 39 H 1.08997 * 109.59040 * 4.56101 * 13 12 10 40 40 H 1.08995 * 109.58733 * 244.12120 * 13 12 10 41 41 H 1.09007 * 109.53130 * 292.36885 * 14 13 12 42 42 H 1.08996 * 109.58779 * 172.18987 * 14 13 12 43 43 H 1.09004 * 113.49269 * 24.69819 * 16 15 14 44 44 H 1.09006 * 113.49256 * 254.18848 * 16 15 14 45 45 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 46 46 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 47 47 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 48 48 H 1.08997 * 109.53381 * 177.20989 * 27 15 14 49 49 H 1.09004 * 109.52572 * 297.42090 * 27 15 14 50 50 H 1.08998 * 109.59052 * 355.42705 * 28 12 10 51 51 H 1.09005 * 109.58621 * 115.86966 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6495 -0.6007 -0.0040 6 6 4.9712 -1.3246 -0.0090 7 6 5.7592 -0.9390 -1.2625 8 6 5.7708 -0.9349 1.2359 9 6 2.3992 -1.1696 0.0028 10 6 2.0401 -2.5992 0.0064 11 8 1.8971 -3.1875 1.0610 12 7 1.8703 -3.2542 -1.1591 13 6 1.5119 -4.6788 -1.1674 14 6 0.2267 -4.8588 -1.9844 15 6 0.4052 -4.1999 -3.3487 16 6 1.2814 -4.9972 -4.3164 17 7 0.3330 -4.6389 -5.3832 18 6 0.3931 -4.4791 -6.7419 19 1 1.3271 -4.6305 -7.2626 20 6 -0.7462 -4.1215 -7.4497 21 7 -1.8843 -3.9366 -6.8149 22 14 -0.6641 -3.9028 -9.3031 23 1 -0.9589 -5.1976 -9.9678 24 1 -1.6639 -2.8898 -9.7267 25 1 0.6959 -3.4471 -9.6879 26 6 -0.7068 -4.5214 -4.3483 27 6 0.7592 -2.7184 -3.2653 28 6 2.0400 -2.5534 -2.4389 29 1 -0.3633 0.0028 1.0277 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3633 -0.8914 -0.5114 32 1 4.7963 -2.4004 -0.0068 33 1 5.9340 0.1369 -1.2651 34 1 6.7154 -1.4622 -1.2659 35 1 5.1895 -1.2166 -2.1495 36 1 5.9457 0.1409 1.2333 37 1 5.2094 -1.2096 2.1289 38 1 6.7270 -1.4581 1.2321 39 1 1.3462 -5.0199 -0.1455 40 1 2.3175 -5.2557 -1.6215 41 1 -0.6069 -4.3911 -1.4603 42 1 0.0237 -5.9215 -2.1167 43 1 1.3080 -6.0651 -4.0994 44 1 2.2744 -4.5698 -4.4563 45 1 -2.6805 -3.6870 -7.3097 46 1 -1.3940 -3.6919 -4.5152 47 1 -1.2203 -5.4600 -4.1400 48 1 0.9201 -2.3251 -4.2691 49 1 -0.0557 -2.1755 -2.7864 50 1 2.2219 -1.4947 -2.2545 51 1 2.8825 -2.9823 -2.9815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035725384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:33 Heat of formation + Delta-G solvation = 72.703520 kcal Electronic energy + Delta-G solvation = -32339.497281 eV Core-core repulsion = 28243.803162 eV Total energy + Delta-G solvation = -4095.694119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.02572 -40.37759 -38.82540 -36.35625 -35.83356 -34.71973 -32.59045 -31.56562 -30.75696 -30.36742 -28.91496 -27.54969 -27.06971 -25.26983 -24.71840 -23.32050 -23.16213 -23.04132 -21.32364 -20.08290 -19.38836 -18.22910 -17.79332 -17.04299 -16.72245 -16.47749 -16.05262 -15.73630 -14.93540 -14.77482 -14.69065 -14.41122 -13.84231 -13.75712 -13.72463 -13.68073 -13.41876 -13.40074 -13.09766 -12.93887 -12.70703 -12.56438 -12.30483 -12.19180 -11.81085 -11.73722 -11.64995 -11.63932 -11.12629 -11.09860 -11.07600 -10.91801 -10.86618 -10.46987 -10.32633 -10.22120 -9.93199 -9.76160 -9.66126 -9.48248 -9.25467 -8.83015 -8.52938 -6.89669 -5.79533 -3.11535 1.15792 1.78480 2.30599 2.64630 3.06753 3.36328 3.41280 3.43309 3.91641 3.99063 4.41878 4.42970 4.51918 4.65188 4.70602 4.91972 4.94968 5.00767 5.11331 5.18453 5.26337 5.27992 5.33802 5.34892 5.40416 5.43922 5.45406 5.48656 5.50613 5.58622 5.59937 5.65308 5.77121 5.81202 5.84326 5.87332 5.89561 5.93617 6.10659 6.22480 6.30044 6.43996 6.53591 6.57613 6.75127 6.77853 7.19175 7.31492 7.32943 7.53697 7.95083 8.02809 8.08946 9.01151 9.67908 10.62463 11.37772 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002963 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.269623 B = 9447.263112 C = 9665.479618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.099 5.901 5 C 0.020 3.980 6 C -0.015 4.015 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.239 4.239 10 C 0.598 3.402 11 O -0.535 6.535 12 N -0.591 5.591 13 C 0.115 3.885 14 C -0.114 4.114 15 C -0.116 4.116 16 C 0.128 3.872 17 N -0.608 5.608 18 C -0.217 4.217 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.167 3.833 27 C -0.093 4.093 28 C 0.110 3.890 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.031 0.969 44 H 0.036 0.964 45 H 0.253 0.747 46 H 0.070 0.930 47 H 0.024 0.976 48 H 0.089 0.911 49 H 0.060 0.940 50 H 0.075 0.925 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.197 5.480 15.531 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.062 5.062 4 O 0.037 5.963 5 C -0.044 4.044 6 C -0.034 4.034 7 C -0.208 4.208 8 C -0.206 4.206 9 C -0.246 4.246 10 C 0.384 3.616 11 O -0.412 6.412 12 N -0.323 5.323 13 C -0.007 4.007 14 C -0.153 4.153 15 C -0.117 4.117 16 C 0.001 3.999 17 N -0.333 5.333 18 C -0.344 4.344 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.041 3.959 27 C -0.131 4.131 28 C -0.012 4.012 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.804 6.556 15.711 20.716 hybrid contribution -0.316 -0.819 -1.191 1.480 sum 11.488 5.737 14.520 19.383 Atomic orbital electron populations 1.20247 0.85072 1.04480 1.03819 1.24745 0.98610 0.86406 1.00834 1.73622 0.89115 1.23306 1.20188 1.84500 1.21444 1.22450 1.67878 1.24593 0.96777 0.83772 0.99211 1.19889 0.87029 0.98587 0.97927 1.21901 1.00176 1.02672 0.96007 1.21876 0.99993 1.02537 0.96206 1.21882 0.92752 0.95428 1.14530 1.16929 0.76999 0.83899 0.83767 1.90793 1.51492 1.68022 1.30890 1.48073 1.67373 1.11252 1.05648 1.21704 0.97539 0.79629 1.01817 1.21737 0.96622 1.01280 0.95628 1.22088 1.01976 0.94782 0.92854 1.22395 0.93905 0.95777 0.87801 1.45565 1.06544 1.79523 1.01694 1.18908 0.95394 1.40124 0.80018 0.90274 1.24771 0.95447 1.02211 0.97945 1.69828 0.99547 1.53060 1.34155 0.86152 0.77176 0.77494 0.85140 1.21658 1.21642 1.20625 1.22029 0.91524 0.98701 0.83617 1.21398 0.95553 0.95510 1.00612 1.21846 0.99512 0.96567 0.83296 0.89699 0.89764 0.89605 0.88066 0.91532 0.90957 0.91729 0.91600 0.91919 0.91007 0.89217 0.91101 0.91729 0.90520 0.95173 0.94606 0.93688 0.91202 0.95829 0.89224 0.92100 0.90662 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.49 36.01 0.38 -0.46 16 2 C 0.06 0.72 7.56 -79.77 -0.60 0.12 16 3 N -0.36 -4.75 12.01 34.78 0.42 -4.33 16 4 O 0.10 1.20 11.06 18.65 0.21 1.41 16 5 C 0.02 0.23 6.06 -34.63 -0.21 0.02 16 6 C -0.01 -0.13 3.33 -91.78 -0.31 -0.43 16 7 C -0.15 -1.05 9.18 37.16 0.34 -0.71 16 8 C -0.15 -1.05 9.18 37.16 0.34 -0.70 16 9 C -0.24 -3.09 4.16 -102.89 -0.43 -3.51 16 10 C 0.60 8.44 7.18 -12.53 -0.09 8.35 16 11 O -0.53 -9.03 16.50 5.27 0.09 -8.94 16 12 N -0.59 -7.70 2.94 -173.93 -0.51 -8.22 16 13 C 0.11 1.45 6.35 -3.64 -0.02 1.43 16 14 C -0.11 -1.59 5.30 -26.78 -0.14 -1.73 16 15 C -0.12 -1.95 0.84 -155.02 -0.13 -2.08 16 16 C 0.13 2.42 7.63 -8.21 -0.06 2.35 16 17 N -0.61 -14.80 3.55 -184.66 -0.66 -15.46 16 18 C -0.22 -5.89 10.74 -15.06 -0.16 -6.05 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -26.65 11.52 55.49 0.64 -26.01 16 22 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.17 3.72 6.54 -8.22 -0.05 3.66 16 27 C -0.09 -1.45 5.27 -26.80 -0.14 -1.59 16 28 C 0.11 1.42 6.24 -3.67 -0.02 1.39 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.90 7.70 -51.93 -0.40 0.50 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 1.16 6.97 -51.93 -0.36 0.80 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 43 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 44 H 0.04 0.64 7.53 -51.93 -0.39 0.25 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.07 1.75 7.11 -51.93 -0.37 1.38 16 47 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 48 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.93 6.27 -51.93 -0.33 0.61 16 51 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -32.08 409.20 -8.62 -40.70 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.53 Total: -1.76 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.41 Total: -0.24 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.11 Total: -54.01 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.29 Total: -7.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.08 -8.62 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035725384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.402 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds