Wall clock time and date at job start Wed Apr 1 2020 04:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30011 * 127.33354 * 2 1 4 4 O 1.20658 * 112.30194 * 180.27784 * 3 2 1 5 5 C 1.33493 * 113.15578 * 359.72025 * 4 3 2 6 6 C 1.50694 * 126.83238 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47165 * 300.00521 * 6 5 4 8 8 C 1.52997 * 109.47296 * 60.00363 * 6 5 4 9 9 C 1.37365 * 106.34102 * 0.02562 * 5 4 3 10 10 C 1.47399 * 128.56532 * 179.97438 * 9 5 4 11 11 O 1.21603 * 119.99907 * 90.00392 * 10 9 5 12 12 N 1.34775 * 119.99767 * 270.00022 * 10 9 5 13 13 C 1.46900 * 120.46117 * 180.02562 * 12 10 9 14 14 C 1.53349 * 108.74479 * 124.34262 * 13 12 10 15 15 C 1.52559 * 109.12733 * 52.25717 * 14 13 12 16 16 C 1.52963 * 114.05870 * 75.53963 * 15 14 13 17 17 N 1.47166 * 87.85376 * 139.44344 * 16 15 14 18 18 C 1.36936 * 136.00143 * 153.08248 * 17 16 15 19 19 H 1.07994 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99903 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46936 * 89.99757 * 22 20 18 24 24 H 1.48502 * 109.47124 * 209.99971 * 22 20 18 25 25 H 1.48498 * 109.46664 * 329.99449 * 22 20 18 26 26 C 1.47170 * 87.99578 * 333.33681 * 17 16 15 27 27 C 1.52550 * 113.43531 * 302.67267 * 15 14 13 28 28 C 1.46887 * 120.46522 * 359.97438 * 12 10 9 29 29 H 1.09003 * 109.46866 * 270.15566 * 1 2 3 30 30 H 1.09000 * 109.47037 * 30.14990 * 1 2 3 31 31 H 1.08999 * 109.47045 * 150.15387 * 1 2 3 32 32 H 1.08999 * 109.47197 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47054 * 59.99485 * 7 6 5 34 34 H 1.08998 * 109.47514 * 179.97438 * 7 6 5 35 35 H 1.09007 * 109.46970 * 300.00139 * 7 6 5 36 36 H 1.08999 * 109.47284 * 300.00297 * 8 6 5 37 37 H 1.08999 * 109.46758 * 60.00162 * 8 6 5 38 38 H 1.08998 * 109.47323 * 180.02562 * 8 6 5 39 39 H 1.08997 * 109.59040 * 4.56101 * 13 12 10 40 40 H 1.08995 * 109.58733 * 244.12120 * 13 12 10 41 41 H 1.09007 * 109.53130 * 292.36885 * 14 13 12 42 42 H 1.08996 * 109.58779 * 172.18987 * 14 13 12 43 43 H 1.09004 * 113.49269 * 24.69819 * 16 15 14 44 44 H 1.09006 * 113.49256 * 254.18848 * 16 15 14 45 45 H 0.97004 * 119.99747 * 180.02562 * 21 20 18 46 46 H 1.08999 * 113.48969 * 141.41363 * 26 17 16 47 47 H 1.08999 * 113.48708 * 271.91864 * 26 17 16 48 48 H 1.08997 * 109.53381 * 177.20989 * 27 15 14 49 49 H 1.09004 * 109.52572 * 297.42090 * 27 15 14 50 50 H 1.08998 * 109.59052 * 355.42705 * 28 12 10 51 51 H 1.09005 * 109.58621 * 115.86966 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0054 5 6 3.6495 -0.6007 -0.0040 6 6 4.9712 -1.3246 -0.0090 7 6 5.7592 -0.9390 -1.2625 8 6 5.7708 -0.9349 1.2359 9 6 2.3992 -1.1696 0.0028 10 6 2.0401 -2.5992 0.0064 11 8 1.8971 -3.1875 1.0610 12 7 1.8703 -3.2542 -1.1591 13 6 1.5119 -4.6788 -1.1674 14 6 0.2267 -4.8588 -1.9844 15 6 0.4052 -4.1999 -3.3487 16 6 1.2814 -4.9972 -4.3164 17 7 0.3330 -4.6389 -5.3832 18 6 0.3931 -4.4791 -6.7419 19 1 1.3271 -4.6305 -7.2626 20 6 -0.7462 -4.1215 -7.4497 21 7 -1.8843 -3.9366 -6.8149 22 14 -0.6641 -3.9028 -9.3031 23 1 -0.9589 -5.1976 -9.9678 24 1 -1.6639 -2.8898 -9.7267 25 1 0.6959 -3.4471 -9.6879 26 6 -0.7068 -4.5214 -4.3483 27 6 0.7592 -2.7184 -3.2653 28 6 2.0400 -2.5534 -2.4389 29 1 -0.3633 0.0028 1.0277 30 1 -0.3633 0.8886 -0.5162 31 1 -0.3633 -0.8914 -0.5114 32 1 4.7963 -2.4004 -0.0068 33 1 5.9340 0.1369 -1.2651 34 1 6.7154 -1.4622 -1.2659 35 1 5.1895 -1.2166 -2.1495 36 1 5.9457 0.1409 1.2333 37 1 5.2094 -1.2096 2.1289 38 1 6.7270 -1.4581 1.2321 39 1 1.3462 -5.0199 -0.1455 40 1 2.3175 -5.2557 -1.6215 41 1 -0.6069 -4.3911 -1.4603 42 1 0.0237 -5.9215 -2.1167 43 1 1.3080 -6.0651 -4.0994 44 1 2.2744 -4.5698 -4.4563 45 1 -2.6805 -3.6870 -7.3097 46 1 -1.3940 -3.6919 -4.5152 47 1 -1.2203 -5.4600 -4.1400 48 1 0.9201 -2.3251 -4.2691 49 1 -0.0557 -2.1755 -2.7864 50 1 2.2219 -1.4947 -2.2545 51 1 2.8825 -2.9823 -2.9815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035725384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:32 Heat of formation + Delta-G solvation = 55.303396 kcal Electronic energy + Delta-G solvation = -32340.251807 eV Core-core repulsion = 28243.803162 eV Total energy + Delta-G solvation = -4096.448645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.98059 -41.64934 -40.20737 -37.15889 -37.04615 -35.67479 -34.42806 -32.72212 -31.93133 -31.66635 -29.82314 -28.78887 -28.07970 -26.69848 -26.14446 -24.64118 -24.30997 -23.90769 -22.84049 -21.20105 -20.33214 -19.36162 -18.80279 -18.67074 -18.17684 -17.57186 -17.00100 -16.86368 -16.64807 -16.10277 -15.82979 -15.60681 -15.24072 -15.11616 -14.77029 -14.47275 -14.40801 -14.22033 -14.18864 -14.09059 -13.83700 -13.73767 -13.61553 -13.13118 -13.04911 -12.91902 -12.82507 -12.60893 -12.55776 -12.33980 -12.24387 -12.17601 -12.15154 -11.83951 -11.75818 -11.64536 -11.32274 -11.15051 -10.93529 -10.89812 -10.78886 -10.42344 -9.70948 -8.86840 -7.87998 -5.19932 0.25475 0.81260 1.22146 1.46123 1.47277 1.55746 1.70738 2.07317 2.48733 2.99427 3.13094 3.33747 3.44966 3.49817 3.58832 3.75512 3.81332 3.95305 4.05907 4.09404 4.14430 4.15550 4.29490 4.36968 4.41109 4.52183 4.53247 4.59339 4.65393 4.67563 4.74222 4.78879 4.84006 4.85383 4.90215 4.92392 4.93062 5.02077 5.07443 5.08656 5.14946 5.20963 5.29573 5.30558 5.33110 5.34926 5.46362 5.59010 5.74639 5.96815 6.22289 6.93557 6.93905 7.15939 7.63879 8.65789 9.29448 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002963 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.269623 B = 9447.263112 C = 9665.479618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 N -0.374 5.374 4 O 0.098 5.902 5 C 0.036 3.964 6 C -0.016 4.016 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.264 4.264 10 C 0.606 3.394 11 O -0.564 6.564 12 N -0.587 5.587 13 C 0.119 3.881 14 C -0.106 4.106 15 C -0.086 4.086 16 C 0.131 3.869 17 N -0.637 5.637 18 C -0.222 4.222 19 H 0.085 0.915 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.974 3.026 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.266 1.266 26 C 0.162 3.838 27 C -0.088 4.088 28 C 0.124 3.876 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.246 0.754 46 H 0.032 0.968 47 H 0.012 0.988 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.694 5.282 16.138 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 N -0.081 5.081 4 O 0.038 5.962 5 C -0.028 4.028 6 C -0.035 4.035 7 C -0.204 4.204 8 C -0.203 4.203 9 C -0.271 4.271 10 C 0.393 3.607 11 O -0.443 6.443 12 N -0.318 5.318 13 C -0.002 4.002 14 C -0.145 4.145 15 C -0.087 4.087 16 C 0.006 3.994 17 N -0.363 5.363 18 C -0.350 4.350 19 H 0.103 0.897 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.191 1.191 26 C 0.036 3.964 27 C -0.126 4.126 28 C 0.002 3.998 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.346 6.350 16.327 22.643 hybrid contribution -1.068 -0.775 -1.345 1.884 sum 13.279 5.575 14.982 20.782 Atomic orbital electron populations 1.20320 0.84061 1.04720 1.04559 1.25079 0.99457 0.86355 1.00387 1.73613 0.89547 1.23762 1.21218 1.84480 1.21070 1.22897 1.67781 1.25141 0.97484 0.83314 0.96827 1.20087 0.85969 0.98071 0.99411 1.21907 1.00715 1.03107 0.94721 1.21881 1.00545 1.03092 0.94831 1.21851 0.93587 0.94932 1.16772 1.16968 0.76256 0.84107 0.83382 1.90778 1.52898 1.68773 1.31862 1.48069 1.66894 1.11427 1.05411 1.21731 0.97167 0.79534 1.01802 1.21677 0.97632 1.01531 0.93657 1.21835 0.98004 0.95557 0.93332 1.22553 0.94001 0.96749 0.86115 1.45898 1.08785 1.79870 1.01751 1.19305 0.95467 1.38541 0.81725 0.89749 1.25563 0.95347 1.03039 1.02078 1.70023 0.99963 1.54845 1.35365 0.85144 0.77449 0.76942 0.80237 1.21671 1.22373 1.19074 1.22013 0.92151 0.96824 0.85450 1.21298 0.97214 0.94432 0.99672 1.21710 0.98044 0.97311 0.82739 0.88687 0.88880 0.89961 0.88198 0.91322 0.88936 0.92360 0.91229 0.93099 0.88828 0.88931 0.89142 0.91831 0.89501 0.93779 0.92979 0.94529 0.94920 0.97012 0.92014 0.92232 0.89925 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.49 71.24 0.75 -0.90 16 2 C 0.05 1.23 7.56 45.16 0.34 1.57 16 3 N -0.37 -9.66 12.01 -44.78 -0.54 -10.20 16 4 O 0.10 2.26 11.06 76.99 0.85 3.11 16 5 C 0.04 0.76 6.06 25.48 0.15 0.91 16 6 C -0.02 -0.23 3.33 -11.54 -0.04 -0.27 16 7 C -0.15 -1.65 9.18 71.98 0.66 -0.99 16 8 C -0.15 -1.71 9.18 71.98 0.66 -1.05 16 9 C -0.26 -6.50 4.16 -18.74 -0.08 -6.57 16 10 C 0.61 16.13 7.18 86.66 0.62 16.75 16 11 O -0.56 -18.28 16.50 -4.04 -0.07 -18.34 16 12 N -0.59 -14.02 2.94 -822.45 -2.42 -16.44 16 13 C 0.12 2.69 6.35 86.42 0.55 3.24 16 14 C -0.11 -2.76 5.30 30.56 0.16 -2.60 16 15 C -0.09 -2.83 0.84 -52.51 -0.04 -2.87 16 16 C 0.13 4.73 7.63 83.32 0.64 5.36 16 17 N -0.64 -31.15 3.55 -738.13 -2.62 -33.77 16 18 C -0.22 -12.09 10.74 84.03 0.90 -11.19 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 21 N -0.95 -57.08 11.52 21.65 0.25 -56.83 16 22 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.16 7.35 6.54 83.31 0.55 7.89 16 27 C -0.09 -2.70 5.27 30.55 0.16 -2.54 16 28 C 0.12 2.94 6.24 86.41 0.54 3.48 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 1.52 7.70 -2.39 -0.02 1.50 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 2.15 6.97 -2.39 -0.02 2.13 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 43 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 44 H 0.05 1.73 7.53 -2.38 -0.02 1.71 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.03 1.71 7.11 -2.39 -0.02 1.69 16 47 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 48 H 0.06 2.28 7.95 -2.39 -0.02 2.26 16 49 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.08 1.90 6.27 -2.39 -0.01 1.88 16 51 H 0.09 1.89 7.60 -2.38 -0.02 1.87 16 Total: -1.00 -70.60 409.20 5.39 -65.22 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.91 Total: 13.15 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.99 Total: 6.91 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.33 Total: -117.23 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.78 Total: -15.23 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.60 5.39 -65.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035725384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.521 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds