Wall clock time and date at job start Wed Apr 1 2020 04:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30183 * 126.79775 * 2 1 4 4 O 1.20919 * 111.60012 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56937 * 359.76326 * 4 3 2 6 6 C 1.50705 * 126.77438 * 180.29076 * 5 4 3 7 7 C 1.35447 * 106.44673 * 0.37826 * 5 4 3 8 8 C 1.50699 * 128.00939 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46961 * 0.33913 * 8 7 5 10 10 C 1.53003 * 109.47034 * 240.34513 * 8 7 5 11 11 C 1.50694 * 109.47719 * 120.33958 * 8 7 5 12 12 O 1.21289 * 119.99859 * 13.32691 * 11 8 7 13 13 N 1.34767 * 120.00491 * 193.32763 * 11 8 7 14 14 C 1.47048 * 120.43276 * 354.49232 * 13 11 8 15 15 C 1.53336 * 108.67663 * 124.47650 * 14 13 11 16 16 C 1.52672 * 109.17156 * 52.38298 * 15 14 13 17 17 C 1.53483 * 113.61879 * 170.82969 * 16 15 14 18 18 N 1.47673 * 85.98912 * 269.02724 * 17 16 15 19 19 C 1.36932 * 134.45513 * 155.67887 * 18 17 16 20 20 H 1.08002 * 120.00132 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00116 * 0.02562 * 19 18 17 22 22 N 1.31611 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46799 * 119.99816 * 23 21 19 26 26 H 1.48501 * 109.46873 * 239.99483 * 23 21 19 27 27 C 1.47660 * 91.08595 * 335.68410 * 18 17 16 28 28 C 1.52664 * 113.18490 * 302.36818 * 16 15 14 29 29 C 1.46899 * 120.47322 * 174.47092 * 13 11 8 30 30 H 1.09002 * 109.46773 * 275.45700 * 1 2 3 31 31 H 1.08998 * 109.47098 * 35.45801 * 1 2 3 32 32 H 1.09000 * 109.46620 * 155.45996 * 1 2 3 33 33 H 1.09000 * 109.47093 * 274.89317 * 6 5 4 34 34 H 1.08993 * 109.47308 * 34.89898 * 6 5 4 35 35 H 1.09008 * 109.47021 * 154.89698 * 6 5 4 36 36 H 1.08996 * 109.46628 * 294.61812 * 10 8 7 37 37 H 1.08995 * 109.47206 * 54.61504 * 10 8 7 38 38 H 1.09001 * 109.46988 * 174.62036 * 10 8 7 39 39 H 1.09004 * 109.68086 * 4.68902 * 14 13 11 40 40 H 1.08998 * 109.58255 * 244.20610 * 14 13 11 41 41 H 1.09001 * 109.53335 * 292.45457 * 15 14 13 42 42 H 1.09001 * 109.53170 * 172.31202 * 15 14 13 43 43 H 1.08993 * 113.79484 * 23.30130 * 17 16 15 44 44 H 1.09000 * 113.78749 * 154.76459 * 17 16 15 45 45 H 0.96996 * 120.00508 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.79484 * 270.04674 * 27 18 17 47 47 H 1.09001 * 113.79285 * 138.57760 * 27 18 17 48 48 H 1.09000 * 109.53687 * 177.49025 * 28 16 15 49 49 H 1.08996 * 109.53744 * 297.64503 * 28 16 15 50 50 H 1.08996 * 109.59163 * 115.79046 * 29 13 11 51 51 H 1.09003 * 109.70296 * 355.41930 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 0.0005 5 6 3.6025 -0.6067 0.0061 6 6 4.9023 -1.3693 0.0145 7 6 2.3541 -1.1320 0.0006 8 6 1.9592 -2.5863 0.0029 9 1 2.8557 -3.2062 0.0160 10 6 1.1439 -2.8954 -1.2544 11 6 1.1280 -2.8794 1.2253 12 8 0.6773 -1.9669 1.8852 13 7 0.8855 -4.1552 1.5853 14 6 1.3235 -5.2671 0.7284 15 6 2.2010 -6.2110 1.5592 16 6 1.4549 -6.5970 2.8341 17 6 2.1419 -7.7115 3.6351 18 7 1.3148 -8.6463 2.8460 19 6 1.4323 -9.9626 2.4876 20 1 0.6662 -10.4290 1.8859 21 6 2.5360 -10.6978 2.8978 22 7 3.4699 -10.1295 3.6307 23 14 2.6958 -12.4938 2.4095 24 1 1.5216 -12.8908 1.5917 25 1 3.9378 -12.6828 1.6177 26 1 2.7549 -13.3356 3.6315 27 6 0.3105 -7.5926 2.5980 28 6 1.0516 -5.3934 3.6822 29 6 0.1807 -4.4544 2.8390 30 1 -0.3633 0.0977 1.0230 31 1 -0.3633 0.8371 -0.5961 32 1 -0.3632 -0.9349 -0.4268 33 1 5.2644 -1.4813 -1.0075 34 1 5.6396 -0.8241 0.6036 35 1 4.7428 -2.3543 0.4535 36 1 0.2025 -2.3470 -1.2208 37 1 1.7085 -2.5942 -2.1367 38 1 0.9397 -3.9651 -1.3012 39 1 1.8987 -4.8783 -0.1119 40 1 0.4527 -5.8083 0.3587 41 1 3.1321 -5.7080 1.8200 42 1 2.4212 -7.1079 0.9801 43 1 3.2108 -7.7981 3.4404 44 1 1.9011 -7.7013 4.6981 45 1 4.2413 -10.6431 3.9170 46 1 -0.4746 -7.5470 3.3528 47 1 -0.0761 -7.5846 1.5789 48 1 0.4868 -5.7323 4.5507 49 1 1.9455 -4.8644 4.0126 50 1 -0.7702 -4.9388 2.6170 51 1 0.0007 -3.5306 3.3889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035816751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:42 Heat of formation + Delta-G solvation = 78.005880 kcal Electronic energy + Delta-G solvation = -32067.819725 eV Core-core repulsion = 27972.355534 eV Total energy + Delta-G solvation = -4095.464191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.99702 -40.55341 -38.91273 -36.04873 -35.63431 -33.89171 -32.79435 -32.15185 -30.76913 -30.29935 -28.80677 -27.79015 -26.95741 -25.32198 -24.92798 -23.63762 -23.24562 -22.08867 -20.95549 -20.28873 -19.44188 -17.93136 -17.64218 -16.95317 -16.77898 -16.67221 -15.83595 -15.40599 -14.92385 -14.70059 -14.53186 -14.35601 -13.89937 -13.78205 -13.71363 -13.61431 -13.45112 -13.23973 -13.12717 -12.90746 -12.66610 -12.49194 -12.31701 -12.23224 -12.11125 -11.95100 -11.82982 -11.64614 -11.10394 -11.08863 -10.92239 -10.89878 -10.88669 -10.39562 -10.25750 -9.92317 -9.74980 -9.66863 -9.57443 -9.38077 -9.21668 -8.82350 -8.46254 -6.88839 -5.79309 -3.11060 1.34000 2.12001 2.60908 2.95078 3.07633 3.35414 3.41272 3.43560 4.06740 4.29108 4.34493 4.42848 4.58684 4.68296 4.82517 4.95357 4.97636 5.01742 5.06838 5.13922 5.17199 5.27812 5.30782 5.34551 5.40021 5.44626 5.48601 5.55776 5.57407 5.58795 5.62876 5.70288 5.77298 5.82002 5.84941 5.87462 5.95615 6.11882 6.17724 6.23516 6.30473 6.45297 6.54396 6.60527 6.76533 6.79310 7.21335 7.34247 7.43838 7.55560 7.96171 8.17059 8.22981 9.02642 9.68810 10.59093 11.37598 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002516 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.806729 B =11127.558077 C =11614.678339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.056 3.944 3 N -0.376 5.376 4 O 0.092 5.908 5 C -0.028 4.028 6 C -0.076 4.076 7 C -0.182 4.182 8 C -0.031 4.031 9 H 0.106 0.894 10 C -0.149 4.149 11 C 0.519 3.481 12 O -0.538 6.538 13 N -0.603 5.603 14 C 0.102 3.898 15 C -0.098 4.098 16 C -0.109 4.109 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.221 4.221 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.127 3.873 28 C -0.117 4.117 29 C 0.116 3.884 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 17.121 -9.448 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 N -0.084 5.084 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.186 4.186 8 C -0.053 4.053 9 H 0.124 0.876 10 C -0.206 4.206 11 C 0.307 3.693 12 O -0.415 6.415 13 N -0.336 5.336 14 C -0.020 4.020 15 C -0.136 4.136 16 C -0.110 4.110 17 C 0.048 3.952 18 N -0.335 5.335 19 C -0.349 4.349 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.001 3.999 28 C -0.156 4.156 29 C -0.006 4.006 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.891 18.589 -9.113 20.789 hybrid contribution 0.052 -2.069 0.071 2.071 sum -1.839 16.520 -9.042 18.922 Atomic orbital electron populations 1.20212 0.86107 1.02571 1.03806 1.23267 0.98839 0.87892 1.00266 1.73810 0.89205 1.23904 1.21461 1.84787 1.21791 1.22150 1.68283 1.24195 0.97946 0.84134 1.02899 1.20371 0.90122 0.98715 1.04098 1.20295 0.91761 0.95940 1.10654 1.19528 0.99846 0.90983 0.94971 0.87562 1.21970 1.00358 1.02839 0.95448 1.20334 0.80644 0.82461 0.85903 1.90673 1.51817 1.44260 1.54724 1.48113 1.57349 1.05319 1.22776 1.22062 0.99276 0.87709 0.93000 1.21502 0.97132 0.99050 0.95928 1.22367 0.98851 0.93441 0.96326 1.22228 0.97421 0.83070 0.92497 1.45990 1.20775 1.07385 1.59366 1.19053 1.04548 0.84652 1.26611 0.90389 1.24755 0.97286 0.98162 1.00231 1.69818 1.11182 1.35334 1.40438 0.86101 0.77475 0.84885 0.77629 1.20529 1.21739 1.21828 1.22582 0.92137 0.87519 0.97679 1.21821 0.99693 0.96074 0.98022 1.21605 0.94767 0.99834 0.84370 0.89413 0.91456 0.90487 0.89328 0.89656 0.89031 0.91497 0.91130 0.90621 0.89812 0.90878 0.92077 0.89331 0.91009 0.95791 0.93756 0.95173 0.94213 0.90799 0.91943 0.91544 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 8.97 36.01 0.32 -0.45 16 2 C 0.06 0.73 6.68 -82.09 -0.55 0.18 16 3 N -0.38 -5.29 12.07 33.42 0.40 -4.88 16 4 O 0.09 1.17 11.20 17.18 0.19 1.36 16 5 C -0.03 -0.30 7.49 -35.30 -0.26 -0.56 16 6 C -0.08 -0.49 10.25 36.01 0.37 -0.12 16 7 C -0.18 -2.10 4.62 -104.43 -0.48 -2.58 16 8 C -0.03 -0.31 2.13 -92.93 -0.20 -0.51 16 9 H 0.11 0.87 6.12 -51.93 -0.32 0.56 16 10 C -0.15 -1.17 8.68 37.16 0.32 -0.85 16 11 C 0.52 6.52 6.87 -10.99 -0.08 6.44 16 12 O -0.54 -8.34 13.07 5.55 0.07 -8.27 16 13 N -0.60 -7.27 2.94 -172.51 -0.51 -7.78 16 14 C 0.10 1.13 5.32 -3.57 -0.02 1.11 16 15 C -0.10 -1.41 5.21 -26.73 -0.14 -1.55 16 16 C -0.11 -1.80 0.77 -154.43 -0.12 -1.92 16 17 C 0.17 3.82 6.64 -3.16 -0.02 3.80 16 18 N -0.61 -14.65 3.53 -179.75 -0.64 -15.29 16 19 C -0.22 -5.94 10.70 -15.06 -0.16 -6.10 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -26.42 11.39 55.49 0.63 -25.79 16 23 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.13 2.37 7.72 -3.15 -0.02 2.35 16 28 C -0.12 -1.65 5.26 -26.73 -0.14 -1.79 16 29 C 0.12 1.48 6.30 -3.65 -0.02 1.46 16 30 H 0.09 1.08 7.59 -51.93 -0.39 0.69 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.77 5.49 -51.93 -0.29 0.48 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.55 7.19 -51.92 -0.37 0.17 16 36 H 0.07 0.56 5.62 -51.93 -0.29 0.26 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.52 5.92 -51.93 -0.31 0.21 16 39 H 0.08 0.72 4.46 -51.93 -0.23 0.49 16 40 H 0.07 0.81 7.49 -51.93 -0.39 0.42 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.49 8.01 -51.93 -0.42 1.07 16 43 H 0.07 1.77 7.12 -51.93 -0.37 1.40 16 44 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 47 H 0.04 0.70 7.41 -51.93 -0.38 0.32 16 48 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 51 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -32.90 390.97 -8.16 -41.07 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.89 Total: -1.41 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.30 Total: -1.40 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.11 Total: -53.74 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.26 Total: -6.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.90 -8.16 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035816751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.071 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds