Wall clock time and date at job start Wed Apr 1 2020 04:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30183 * 126.79775 * 2 1 4 4 O 1.20919 * 111.60012 * 179.97438 * 3 2 1 5 5 C 1.34041 * 111.56937 * 359.76326 * 4 3 2 6 6 C 1.50705 * 126.77438 * 180.29076 * 5 4 3 7 7 C 1.35447 * 106.44673 * 0.37826 * 5 4 3 8 8 C 1.50699 * 128.00939 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46961 * 0.33913 * 8 7 5 10 10 C 1.53003 * 109.47034 * 240.34513 * 8 7 5 11 11 C 1.50694 * 109.47719 * 120.33958 * 8 7 5 12 12 O 1.21289 * 119.99859 * 13.32691 * 11 8 7 13 13 N 1.34767 * 120.00491 * 193.32763 * 11 8 7 14 14 C 1.47048 * 120.43276 * 354.49232 * 13 11 8 15 15 C 1.53336 * 108.67663 * 124.47650 * 14 13 11 16 16 C 1.52672 * 109.17156 * 52.38298 * 15 14 13 17 17 C 1.53483 * 113.61879 * 170.82969 * 16 15 14 18 18 N 1.47673 * 85.98912 * 269.02724 * 17 16 15 19 19 C 1.36932 * 134.45513 * 155.67887 * 18 17 16 20 20 H 1.08002 * 120.00132 * 180.02562 * 19 18 17 21 21 C 1.38817 * 120.00116 * 0.02562 * 19 18 17 22 22 N 1.31611 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47229 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46799 * 119.99816 * 23 21 19 26 26 H 1.48501 * 109.46873 * 239.99483 * 23 21 19 27 27 C 1.47660 * 91.08595 * 335.68410 * 18 17 16 28 28 C 1.52664 * 113.18490 * 302.36818 * 16 15 14 29 29 C 1.46899 * 120.47322 * 174.47092 * 13 11 8 30 30 H 1.09002 * 109.46773 * 275.45700 * 1 2 3 31 31 H 1.08998 * 109.47098 * 35.45801 * 1 2 3 32 32 H 1.09000 * 109.46620 * 155.45996 * 1 2 3 33 33 H 1.09000 * 109.47093 * 274.89317 * 6 5 4 34 34 H 1.08993 * 109.47308 * 34.89898 * 6 5 4 35 35 H 1.09008 * 109.47021 * 154.89698 * 6 5 4 36 36 H 1.08996 * 109.46628 * 294.61812 * 10 8 7 37 37 H 1.08995 * 109.47206 * 54.61504 * 10 8 7 38 38 H 1.09001 * 109.46988 * 174.62036 * 10 8 7 39 39 H 1.09004 * 109.68086 * 4.68902 * 14 13 11 40 40 H 1.08998 * 109.58255 * 244.20610 * 14 13 11 41 41 H 1.09001 * 109.53335 * 292.45457 * 15 14 13 42 42 H 1.09001 * 109.53170 * 172.31202 * 15 14 13 43 43 H 1.08993 * 113.79484 * 23.30130 * 17 16 15 44 44 H 1.09000 * 113.78749 * 154.76459 * 17 16 15 45 45 H 0.96996 * 120.00508 * 180.02562 * 22 21 19 46 46 H 1.09001 * 113.79484 * 270.04674 * 27 18 17 47 47 H 1.09001 * 113.79285 * 138.57760 * 27 18 17 48 48 H 1.09000 * 109.53687 * 177.49025 * 28 16 15 49 49 H 1.08996 * 109.53744 * 297.64503 * 28 16 15 50 50 H 1.08996 * 109.59163 * 115.79046 * 29 13 11 51 51 H 1.09003 * 109.70296 * 355.41930 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 0.0005 5 6 3.6025 -0.6067 0.0061 6 6 4.9023 -1.3693 0.0145 7 6 2.3541 -1.1320 0.0006 8 6 1.9592 -2.5863 0.0029 9 1 2.8557 -3.2062 0.0160 10 6 1.1439 -2.8954 -1.2544 11 6 1.1280 -2.8794 1.2253 12 8 0.6773 -1.9669 1.8852 13 7 0.8855 -4.1552 1.5853 14 6 1.3235 -5.2671 0.7284 15 6 2.2010 -6.2110 1.5592 16 6 1.4549 -6.5970 2.8341 17 6 2.1419 -7.7115 3.6351 18 7 1.3148 -8.6463 2.8460 19 6 1.4323 -9.9626 2.4876 20 1 0.6662 -10.4290 1.8859 21 6 2.5360 -10.6978 2.8978 22 7 3.4699 -10.1295 3.6307 23 14 2.6958 -12.4938 2.4095 24 1 1.5216 -12.8908 1.5917 25 1 3.9378 -12.6828 1.6177 26 1 2.7549 -13.3356 3.6315 27 6 0.3105 -7.5926 2.5980 28 6 1.0516 -5.3934 3.6822 29 6 0.1807 -4.4544 2.8390 30 1 -0.3633 0.0977 1.0230 31 1 -0.3633 0.8371 -0.5961 32 1 -0.3632 -0.9349 -0.4268 33 1 5.2644 -1.4813 -1.0075 34 1 5.6396 -0.8241 0.6036 35 1 4.7428 -2.3543 0.4535 36 1 0.2025 -2.3470 -1.2208 37 1 1.7085 -2.5942 -2.1367 38 1 0.9397 -3.9651 -1.3012 39 1 1.8987 -4.8783 -0.1119 40 1 0.4527 -5.8083 0.3587 41 1 3.1321 -5.7080 1.8200 42 1 2.4212 -7.1079 0.9801 43 1 3.2108 -7.7981 3.4404 44 1 1.9011 -7.7013 4.6981 45 1 4.2413 -10.6431 3.9170 46 1 -0.4746 -7.5470 3.3528 47 1 -0.0761 -7.5846 1.5789 48 1 0.4868 -5.7323 4.5507 49 1 1.9455 -4.8644 4.0126 50 1 -0.7702 -4.9388 2.6170 51 1 0.0007 -3.5306 3.3889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035816751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:41 Heat of formation + Delta-G solvation = 58.906297 kcal Electronic energy + Delta-G solvation = -32068.647945 eV Core-core repulsion = 27972.355534 eV Total energy + Delta-G solvation = -4096.292411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.89217 -41.65209 -40.23663 -37.16361 -36.61915 -34.76637 -34.37066 -33.25384 -31.78734 -31.70931 -29.68650 -28.65959 -28.42560 -26.75163 -26.04497 -24.85640 -24.34099 -23.35968 -22.26298 -21.13667 -20.47352 -19.00586 -18.66231 -18.61230 -17.88150 -17.77056 -16.83573 -16.75944 -16.32646 -16.06791 -15.65386 -15.39484 -15.18333 -14.98486 -14.75192 -14.51148 -14.32558 -14.14321 -13.89289 -13.83363 -13.73804 -13.60880 -13.47226 -13.25773 -13.07471 -13.03899 -12.86806 -12.83350 -12.74777 -12.59503 -12.38926 -12.10818 -12.05520 -11.70938 -11.62266 -11.53850 -11.08926 -10.94096 -10.84001 -10.77937 -10.61362 -10.04474 -9.52582 -8.84053 -7.85505 -5.17422 0.52144 1.21809 1.47310 1.48340 1.57891 1.67088 2.07256 2.26346 2.50677 3.23753 3.35204 3.44077 3.48623 3.57597 3.66906 3.84690 3.87522 3.96305 4.14846 4.19291 4.22375 4.31654 4.39307 4.42220 4.47741 4.61260 4.63962 4.71290 4.73253 4.74605 4.77421 4.79124 4.85592 4.89937 4.91826 4.93149 4.96849 4.98856 5.12028 5.14873 5.20386 5.24931 5.28802 5.33090 5.39726 5.42716 5.59000 5.64674 5.80613 6.00083 6.48326 6.97924 7.21916 7.36089 7.67056 8.64199 9.31270 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002516 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.806729 B =11127.558077 C =11614.678339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.042 3.958 3 N -0.408 5.408 4 O 0.080 5.920 5 C -0.022 4.022 6 C -0.077 4.077 7 C -0.198 4.198 8 C -0.026 4.026 9 H 0.129 0.871 10 C -0.147 4.147 11 C 0.518 3.482 12 O -0.570 6.570 13 N -0.601 5.601 14 C 0.111 3.889 15 C -0.094 4.094 16 C -0.080 4.080 17 C 0.166 3.834 18 N -0.636 5.636 19 C -0.226 4.226 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.972 3.028 24 H -0.265 1.265 25 H -0.291 1.291 26 H -0.299 1.299 27 C 0.129 3.871 28 C -0.109 4.109 29 C 0.122 3.878 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.005 0.995 45 H 0.246 0.754 46 H 0.037 0.963 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 17.133 -11.526 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.117 4.117 3 N -0.118 5.118 4 O 0.019 5.981 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.202 4.202 8 C -0.047 4.047 9 H 0.147 0.853 10 C -0.204 4.204 11 C 0.307 3.693 12 O -0.449 6.449 13 N -0.334 5.334 14 C -0.011 4.011 15 C -0.133 4.133 16 C -0.081 4.081 17 C 0.041 3.959 18 N -0.362 5.362 19 C -0.355 4.355 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.801 3.199 24 H -0.190 1.190 25 H -0.218 1.218 26 H -0.226 1.226 27 C 0.004 3.996 28 C -0.148 4.148 29 C 0.000 4.000 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.096 0.904 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.285 18.612 -11.213 21.849 hybrid contribution 0.160 -2.051 0.770 2.196 sum -2.125 16.561 -10.443 19.694 Atomic orbital electron populations 1.20206 0.85445 1.03628 1.03023 1.23658 0.99609 0.88443 0.99990 1.73795 0.89874 1.24995 1.23119 1.84741 1.21343 1.23453 1.68528 1.24928 0.99357 0.83377 1.00904 1.20612 0.88333 0.98535 1.05880 1.20537 0.91814 0.96466 1.11419 1.19606 1.00455 0.90297 0.94380 0.85328 1.22000 0.99920 1.03674 0.94805 1.20819 0.80243 0.81943 0.86303 1.90674 1.53083 1.45172 1.55983 1.48139 1.57082 1.05585 1.22550 1.22091 0.99385 0.86761 0.92832 1.21444 0.97908 0.99041 0.94872 1.22113 0.96727 0.92736 0.96573 1.22171 0.95863 0.85776 0.92101 1.46353 1.22956 1.07352 1.59568 1.19432 1.04191 0.86119 1.25727 0.90004 1.25531 0.97409 1.02023 1.01041 1.70008 1.11654 1.36472 1.42119 0.85101 0.77638 0.80214 0.76942 1.18972 1.21842 1.22616 1.22756 0.92060 0.86005 0.98759 1.21726 1.00000 0.95136 0.97893 1.21492 0.94842 0.99113 0.84561 0.91022 0.90505 0.89343 0.86958 0.88737 0.88013 0.92150 0.89743 0.89142 0.86520 0.89903 0.91588 0.91602 0.94260 0.97738 0.94519 0.94492 0.92319 0.90784 0.92122 0.90401 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 8.97 71.24 0.64 -0.79 16 2 C 0.04 1.05 6.68 43.58 0.29 1.34 16 3 N -0.41 -11.40 12.07 -49.55 -0.60 -12.00 16 4 O 0.08 1.97 11.20 71.63 0.80 2.77 16 5 C -0.02 -0.42 7.49 25.04 0.19 -0.23 16 6 C -0.08 -0.76 10.25 71.24 0.73 -0.03 16 7 C -0.20 -4.17 4.62 -19.74 -0.09 -4.26 16 8 C -0.03 -0.43 2.13 -12.29 -0.03 -0.45 16 9 H 0.13 1.54 6.12 -2.39 -0.01 1.52 16 10 C -0.15 -1.76 8.68 71.98 0.62 -1.14 16 11 C 0.52 11.69 6.87 87.66 0.60 12.29 16 12 O -0.57 -16.91 13.07 -3.06 -0.04 -16.95 16 13 N -0.60 -12.71 2.94 -818.10 -2.41 -15.12 16 14 C 0.11 2.05 5.32 86.39 0.46 2.51 16 15 C -0.09 -2.53 5.21 30.60 0.16 -2.37 16 16 C -0.08 -2.57 0.77 -52.04 -0.04 -2.61 16 17 C 0.17 7.51 6.64 86.31 0.57 8.08 16 18 N -0.64 -30.64 3.53 -722.61 -2.55 -33.19 16 19 C -0.23 -12.15 10.70 84.04 0.90 -11.25 16 20 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 22 N -0.95 -56.20 11.39 21.65 0.25 -55.96 16 23 Si 0.97 44.57 29.55 68.60 2.03 46.59 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 27 C 0.13 4.62 7.72 86.32 0.67 5.29 16 28 C -0.11 -2.91 5.26 30.60 0.16 -2.75 16 29 C 0.12 2.84 6.30 86.42 0.54 3.38 16 30 H 0.07 1.78 7.59 -2.39 -0.02 1.76 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.65 5.49 -2.39 -0.01 1.64 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.84 7.19 -2.38 -0.02 0.82 16 36 H 0.06 0.82 5.62 -2.39 -0.01 0.81 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 0.82 5.92 -2.39 -0.01 0.80 16 39 H 0.12 1.44 4.46 -2.39 -0.01 1.42 16 40 H 0.08 1.45 7.49 -2.39 -0.02 1.44 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 43 H 0.04 2.01 7.12 -2.39 -0.02 1.99 16 44 H 0.00 0.23 8.09 -2.39 -0.02 0.21 16 45 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.04 1.31 8.07 -2.39 -0.02 1.29 16 47 H 0.06 1.90 7.41 -2.39 -0.02 1.88 16 48 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 49 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.08 1.66 8.07 -2.39 -0.02 1.64 16 51 H 0.08 2.04 7.01 -2.39 -0.02 2.02 16 Total: -1.00 -73.98 390.97 5.27 -68.72 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.94 Total: 11.40 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.85 Total: 3.74 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -5.31 Total: -116.27 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.76 Total: -14.18 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.98 5.27 -68.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035816751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.624 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds