Wall clock time and date at job start Wed Apr 1 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34251 * 126.52428 * 2 1 4 4 C 1.34051 * 108.22732 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.38089 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.46855 * 300.02674 * 5 4 3 7 7 C 1.53001 * 109.47079 * 60.02440 * 5 4 3 8 8 N 1.29937 * 109.24166 * 359.74227 * 4 3 2 9 9 C 1.36068 * 108.47910 * 0.41174 * 8 4 3 10 10 C 1.47415 * 126.45011 * 179.86164 * 9 8 4 11 11 O 1.21616 * 119.99963 * 185.42046 * 10 9 8 12 12 N 1.34779 * 120.00273 * 5.41659 * 10 9 8 13 13 C 1.46823 * 120.30266 * 176.69559 * 12 10 9 14 14 C 1.52960 * 107.39883 * 235.00423 * 13 12 10 15 15 C 1.53041 * 110.00109 * 298.54535 * 14 13 12 16 16 H 1.08996 * 110.62578 * 289.28698 * 15 14 13 17 17 C 1.51784 * 112.25256 * 52.95200 * 15 14 13 18 18 H 1.09009 * 105.74334 * 207.28064 * 17 15 14 19 19 C 1.53386 * 105.82098 * 95.44070 * 17 15 14 20 20 C 1.54466 * 102.53496 * 29.53500 * 19 17 15 21 21 N 1.46868 * 106.66817 * 332.27857 * 20 19 17 22 22 C 1.36934 * 125.33915 * 195.32851 * 21 20 19 23 23 H 1.07997 * 119.99995 * 180.02562 * 22 21 20 24 24 C 1.38808 * 119.99903 * 0.04999 * 22 21 20 25 25 N 1.31618 * 120.00337 * 325.27492 * 24 22 21 26 26 Si 1.86800 * 119.99910 * 145.27927 * 24 22 21 27 27 H 1.48500 * 109.47276 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47445 * 59.99743 * 26 24 22 29 29 H 1.48501 * 109.47208 * 299.99564 * 26 24 22 30 30 C 1.45259 * 120.15078 * 356.92954 * 12 10 9 31 31 H 1.08999 * 109.47107 * 269.96063 * 1 2 3 32 32 H 1.08997 * 109.47115 * 29.96147 * 1 2 3 33 33 H 1.09005 * 109.47012 * 149.95630 * 1 2 3 34 34 H 1.09003 * 109.47044 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47731 * 59.99876 * 6 5 4 36 36 H 1.09008 * 109.47049 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47415 * 299.99708 * 6 5 4 38 38 H 1.09005 * 109.46731 * 60.00064 * 7 5 4 39 39 H 1.08996 * 109.47133 * 180.02562 * 7 5 4 40 40 H 1.09003 * 109.46944 * 300.00371 * 7 5 4 41 41 H 1.09001 * 109.86750 * 115.53607 * 13 12 10 42 42 H 1.09000 * 109.87257 * 354.48089 * 13 12 10 43 43 H 1.09000 * 109.38469 * 178.38448 * 14 13 12 44 44 H 1.09006 * 109.38337 * 58.70988 * 14 13 12 45 45 H 1.09001 * 110.79404 * 271.28138 * 19 17 15 46 46 H 1.08995 * 110.80125 * 147.79786 * 19 17 15 47 47 H 1.09006 * 110.02378 * 212.97114 * 20 19 17 48 48 H 1.09008 * 110.05568 * 91.59754 * 20 19 17 49 49 H 0.97005 * 119.99927 * 354.48710 * 25 24 22 50 50 H 1.09005 * 108.84546 * 22.00260 * 30 12 10 51 51 H 1.08996 * 107.99395 * 264.71652 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.7756 2.4341 -1.2503 7 6 4.7776 2.4336 1.2481 8 7 3.6002 -0.6412 0.0046 9 6 2.3170 -1.0937 -0.0006 10 6 1.8854 -2.5033 -0.0003 11 8 0.7052 -2.7778 -0.1048 12 7 2.7986 -3.4877 0.1157 13 6 2.3706 -4.8902 0.1895 14 6 2.9739 -5.4861 1.4626 15 6 4.5018 -5.4334 1.3922 16 1 4.8771 -6.1462 0.6580 17 6 5.0151 -4.0390 1.0821 18 1 5.9737 -4.1810 0.5828 19 6 5.3440 -3.4033 2.4387 20 6 5.7276 -4.6278 3.2986 21 7 5.0025 -5.7773 2.7418 22 6 4.8230 -6.9805 3.3704 23 1 4.2735 -7.7698 2.8790 24 6 5.3469 -7.1856 4.6394 25 7 6.4927 -6.6320 4.9758 26 14 4.4259 -8.2475 5.8696 27 1 5.1908 -8.3088 7.1410 28 1 4.2688 -9.6183 5.3205 29 1 3.0862 -7.6601 6.1253 30 6 4.2141 -3.1667 0.1735 31 1 -0.3633 -0.0007 1.0277 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.6944 0.9379 -0.0021 35 1 3.8743 3.0468 -1.2496 36 1 5.6541 3.0794 -1.2511 37 1 4.7866 1.8051 -2.1405 38 1 4.7899 1.8042 2.1380 39 1 5.6555 3.0796 1.2473 40 1 3.8761 3.0464 1.2489 41 1 2.7334 -5.4346 -0.6823 42 1 1.2829 -4.9438 0.2347 43 1 2.6520 -6.5225 1.5647 44 1 2.6316 -4.9159 2.3263 45 1 4.4705 -2.8989 2.8517 46 1 6.1840 -2.7145 2.3499 47 1 5.4295 -4.4647 4.3344 48 1 6.8022 -4.8019 3.2429 49 1 7.0101 -6.1474 4.3136 50 1 4.3276 -2.1328 0.4996 51 1 4.6204 -3.2531 -0.8342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036715032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:29 Heat of formation + Delta-G solvation = 18.822790 kcal Electronic energy + Delta-G solvation = -32288.012752 eV Core-core repulsion = 28189.982189 eV Total energy + Delta-G solvation = -4098.030563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.69854 -40.13644 -38.34273 -36.16733 -35.51524 -34.97610 -32.82842 -32.15531 -31.86368 -29.52860 -28.35841 -27.65008 -27.42990 -25.13722 -24.03740 -23.39806 -23.15403 -22.23795 -21.09326 -20.12386 -19.64966 -18.18949 -17.57763 -17.28027 -17.16167 -16.44566 -15.81591 -15.44797 -15.20213 -14.69665 -14.66476 -14.39957 -13.95225 -13.79596 -13.61226 -13.50787 -13.30235 -13.13398 -12.96957 -12.89910 -12.78129 -12.64110 -12.27858 -12.16455 -11.92648 -11.81819 -11.75003 -11.47852 -11.42055 -11.36050 -11.00713 -10.67571 -10.56466 -10.31778 -10.18666 -10.07672 -9.95235 -9.68952 -9.55781 -9.43345 -9.00541 -8.40758 -8.20621 -6.93969 -6.10029 -2.97970 0.93906 1.83432 2.23674 3.03398 3.28327 3.53610 3.55561 3.59974 3.76412 4.31618 4.42763 4.55809 4.56877 4.62322 4.79874 4.98618 5.02141 5.12771 5.15176 5.16458 5.24740 5.29268 5.33507 5.35878 5.37008 5.46153 5.51809 5.56649 5.64277 5.66039 5.72129 5.76555 5.83913 5.86290 5.87236 5.95030 5.96501 6.16680 6.25646 6.28023 6.43525 6.53957 6.62520 6.71420 6.95484 7.02986 7.08584 7.18393 7.29195 7.57654 7.83390 8.19314 8.53624 9.04596 9.88871 10.42804 11.24446 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.003125 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.871783 B = 8958.532537 C = 9999.129016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.037 3.963 3 O -0.193 6.193 4 C 0.199 3.801 5 C 0.002 3.998 6 C -0.150 4.150 7 C -0.151 4.151 8 N -0.451 5.451 9 C -0.068 4.068 10 C 0.599 3.401 11 O -0.545 6.545 12 N -0.579 5.579 13 C 0.110 3.890 14 C -0.134 4.134 15 C 0.175 3.825 16 H 0.039 0.961 17 C -0.104 4.104 18 H 0.062 0.938 19 C -0.122 4.122 20 C 0.145 3.855 21 N -0.600 5.600 22 C -0.341 4.341 23 H 0.070 0.930 24 C -0.020 4.020 25 N -0.913 5.913 26 Si 1.050 2.950 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.295 1.295 30 C 0.098 3.902 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.022 0.978 49 H 0.270 0.730 50 H 0.135 0.865 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 20.258 -13.151 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 O -0.080 6.080 4 C -0.009 4.009 5 C -0.018 4.018 6 C -0.207 4.207 7 C -0.209 4.209 8 N -0.180 5.180 9 C -0.187 4.187 10 C 0.386 3.614 11 O -0.424 6.424 12 N -0.309 5.309 13 C -0.012 4.012 14 C -0.174 4.174 15 C 0.068 3.932 16 H 0.057 0.943 17 C -0.124 4.124 18 H 0.081 0.919 19 C -0.160 4.160 20 C 0.019 3.981 21 N -0.325 5.325 22 C -0.468 4.468 23 H 0.088 0.912 24 C -0.222 4.222 25 N -0.554 5.554 26 Si 0.879 3.121 27 H -0.212 1.212 28 H -0.221 1.221 29 H -0.223 1.223 30 C -0.025 4.025 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.040 0.960 49 H 0.082 0.918 50 H 0.152 0.848 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.858 19.060 -11.575 23.056 hybrid contribution -0.312 0.679 -1.550 1.721 sum -6.170 19.740 -13.125 24.495 Atomic orbital electron populations 1.20608 0.82564 1.05393 1.04698 1.23693 0.95059 0.83206 0.99963 1.84282 1.17899 1.36185 1.69668 1.26393 0.84038 0.90432 1.00085 1.19814 0.89885 0.94360 0.97702 1.21894 1.03166 0.99514 0.96172 1.21911 1.03151 0.99572 0.96285 1.70679 1.21114 1.08167 1.18041 1.21495 0.88695 0.95597 1.12938 1.16744 0.85144 0.82508 0.76990 1.90736 1.16380 1.82965 1.52346 1.47470 1.07175 1.06522 1.69761 1.21768 1.00896 0.79561 0.99010 1.22326 0.98040 1.01135 0.95931 1.20402 0.91992 0.92129 0.88667 0.94319 1.20741 0.99254 0.95825 0.96550 0.91947 1.22425 1.00212 0.98160 0.95213 1.21319 0.94905 0.85595 0.96233 1.44799 1.63562 1.11069 1.13119 1.19656 1.34804 0.91507 1.00848 0.91162 1.25555 0.96878 1.02522 0.97221 1.70809 1.09177 1.35687 1.39702 0.83745 0.76054 0.75281 0.76977 1.21243 1.22121 1.22272 1.21329 0.78779 1.03582 0.98854 0.89082 0.90259 0.86745 0.86541 0.91861 0.90715 0.91878 0.91648 0.90686 0.91870 0.91525 0.89226 0.91006 0.91556 0.92410 0.91722 0.93625 0.96010 0.91831 0.84788 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.94 36.01 0.36 -0.36 16 2 C 0.04 0.46 7.44 -35.08 -0.26 0.20 16 3 O -0.19 -2.19 10.73 6.52 0.07 -2.12 16 4 C 0.20 2.20 6.81 -13.08 -0.09 2.11 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.15 -0.85 9.17 37.15 0.34 -0.51 16 7 C -0.15 -0.96 9.18 37.16 0.34 -0.62 16 8 N -0.45 -6.09 7.71 -7.65 -0.06 -6.15 16 9 C -0.07 -0.99 6.69 -83.02 -0.56 -1.54 16 10 C 0.60 9.89 7.67 -12.52 -0.10 9.79 16 11 O -0.55 -9.60 14.18 5.26 0.07 -9.53 16 12 N -0.58 -9.54 2.99 -177.91 -0.53 -10.07 16 13 C 0.11 1.80 6.43 -3.89 -0.02 1.77 16 14 C -0.13 -2.59 5.18 -26.73 -0.14 -2.73 16 15 C 0.18 3.65 3.41 -67.70 -0.23 3.42 16 16 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.10 -1.85 2.45 -92.87 -0.23 -2.08 16 18 H 0.06 1.08 8.05 -51.92 -0.42 0.66 16 19 C -0.12 -2.29 6.37 -25.76 -0.16 -2.45 16 20 C 0.15 3.47 5.27 -3.07 -0.02 3.45 16 21 N -0.60 -15.25 3.05 -164.00 -0.50 -15.75 16 22 C -0.34 -9.66 9.57 -15.06 -0.14 -9.80 16 23 H 0.07 1.98 8.02 -52.49 -0.42 1.56 16 24 C -0.02 -0.58 5.05 -17.43 -0.09 -0.67 16 25 N -0.91 -27.81 12.72 55.49 0.71 -27.11 16 26 Si 1.05 25.79 30.03 -169.99 -5.11 20.69 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 30 C 0.10 1.54 5.54 -6.54 -0.04 1.50 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.22 6.38 -51.93 -0.33 0.89 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 43 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.05 1.21 7.62 -51.93 -0.40 0.82 16 48 H 0.02 0.56 6.68 -51.92 -0.35 0.21 16 49 H 0.27 8.20 5.82 -40.82 -0.24 7.96 16 50 H 0.14 2.08 3.86 -62.75 -0.24 1.84 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -33.54 395.96 -9.04 -42.58 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.31 Total: 0.32 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.34 Total: 1.17 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.38 Total: -59.08 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.14 Total: -11.65 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.11 Total: 20.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.54 -9.04 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036715032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.401 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds