Wall clock time and date at job start Wed Apr 1 2020 05:20:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 O 1.34251 * 126.52428 * 2 1
4 4 C 1.34051 * 108.22732 * 180.02562 * 3 2 1
5 5 C 1.50703 * 125.38089 * 179.97438 * 4 3 2
6 6 C 1.52993 * 109.46855 * 300.02674 * 5 4 3
7 7 C 1.53001 * 109.47079 * 60.02440 * 5 4 3
8 8 N 1.29937 * 109.24166 * 359.74227 * 4 3 2
9 9 C 1.36068 * 108.47910 * 0.41174 * 8 4 3
10 10 C 1.47415 * 126.45011 * 179.86164 * 9 8 4
11 11 O 1.21616 * 119.99963 * 185.42046 * 10 9 8
12 12 N 1.34779 * 120.00273 * 5.41659 * 10 9 8
13 13 C 1.46823 * 120.30266 * 176.69559 * 12 10 9
14 14 C 1.52960 * 107.39883 * 235.00423 * 13 12 10
15 15 C 1.53041 * 110.00109 * 298.54535 * 14 13 12
16 16 H 1.08996 * 110.62578 * 289.28698 * 15 14 13
17 17 C 1.51784 * 112.25256 * 52.95200 * 15 14 13
18 18 H 1.09009 * 105.74334 * 207.28064 * 17 15 14
19 19 C 1.53386 * 105.82098 * 95.44070 * 17 15 14
20 20 C 1.54466 * 102.53496 * 29.53500 * 19 17 15
21 21 N 1.46868 * 106.66817 * 332.27857 * 20 19 17
22 22 C 1.36934 * 125.33915 * 195.32851 * 21 20 19
23 23 H 1.07997 * 119.99995 * 180.02562 * 22 21 20
24 24 C 1.38808 * 119.99903 * 0.04999 * 22 21 20
25 25 N 1.31618 * 120.00337 * 325.27492 * 24 22 21
26 26 Si 1.86800 * 119.99910 * 145.27927 * 24 22 21
27 27 H 1.48500 * 109.47276 * 179.97438 * 26 24 22
28 28 H 1.48500 * 109.47445 * 59.99743 * 26 24 22
29 29 H 1.48501 * 109.47208 * 299.99564 * 26 24 22
30 30 C 1.45259 * 120.15078 * 356.92954 * 12 10 9
31 31 H 1.08999 * 109.47107 * 269.96063 * 1 2 3
32 32 H 1.08997 * 109.47115 * 29.96147 * 1 2 3
33 33 H 1.09005 * 109.47012 * 149.95630 * 1 2 3
34 34 H 1.09003 * 109.47044 * 180.02562 * 5 4 3
35 35 H 1.08994 * 109.47731 * 59.99876 * 6 5 4
36 36 H 1.09008 * 109.47049 * 180.02562 * 6 5 4
37 37 H 1.09002 * 109.47415 * 299.99708 * 6 5 4
38 38 H 1.09005 * 109.46731 * 60.00064 * 7 5 4
39 39 H 1.08996 * 109.47133 * 180.02562 * 7 5 4
40 40 H 1.09003 * 109.46944 * 300.00371 * 7 5 4
41 41 H 1.09001 * 109.86750 * 115.53607 * 13 12 10
42 42 H 1.09000 * 109.87257 * 354.48089 * 13 12 10
43 43 H 1.09000 * 109.38469 * 178.38448 * 14 13 12
44 44 H 1.09006 * 109.38337 * 58.70988 * 14 13 12
45 45 H 1.09001 * 110.79404 * 271.28138 * 19 17 15
46 46 H 1.08995 * 110.80125 * 147.79786 * 19 17 15
47 47 H 1.09006 * 110.02378 * 212.97114 * 20 19 17
48 48 H 1.09008 * 110.05568 * 91.59754 * 20 19 17
49 49 H 0.97005 * 119.99927 * 354.48710 * 25 24 22
50 50 H 1.09005 * 108.84546 * 22.00260 * 30 12 10
51 51 H 1.08996 * 107.99395 * 264.71652 * 30 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3060 1.0789 0.0000
4 6 3.5788 0.6580 -0.0006
5 6 4.7930 1.5507 -0.0013
6 6 4.7756 2.4341 -1.2503
7 6 4.7776 2.4336 1.2481
8 7 3.6002 -0.6412 0.0046
9 6 2.3170 -1.0937 -0.0006
10 6 1.8854 -2.5033 -0.0003
11 8 0.7052 -2.7778 -0.1048
12 7 2.7986 -3.4877 0.1157
13 6 2.3706 -4.8902 0.1895
14 6 2.9739 -5.4861 1.4626
15 6 4.5018 -5.4334 1.3922
16 1 4.8771 -6.1462 0.6580
17 6 5.0151 -4.0390 1.0821
18 1 5.9737 -4.1810 0.5828
19 6 5.3440 -3.4033 2.4387
20 6 5.7276 -4.6278 3.2986
21 7 5.0025 -5.7773 2.7418
22 6 4.8230 -6.9805 3.3704
23 1 4.2735 -7.7698 2.8790
24 6 5.3469 -7.1856 4.6394
25 7 6.4927 -6.6320 4.9758
26 14 4.4259 -8.2475 5.8696
27 1 5.1908 -8.3088 7.1410
28 1 4.2688 -9.6183 5.3205
29 1 3.0862 -7.6601 6.1253
30 6 4.2141 -3.1667 0.1735
31 1 -0.3633 -0.0007 1.0277
32 1 -0.3633 0.8903 -0.5132
33 1 -0.3633 -0.8896 -0.5145
34 1 5.6944 0.9379 -0.0021
35 1 3.8743 3.0468 -1.2496
36 1 5.6541 3.0794 -1.2511
37 1 4.7866 1.8051 -2.1405
38 1 4.7899 1.8042 2.1380
39 1 5.6555 3.0796 1.2473
40 1 3.8761 3.0464 1.2489
41 1 2.7334 -5.4346 -0.6823
42 1 1.2829 -4.9438 0.2347
43 1 2.6520 -6.5225 1.5647
44 1 2.6316 -4.9159 2.3263
45 1 4.4705 -2.8989 2.8517
46 1 6.1840 -2.7145 2.3499
47 1 5.4295 -4.4647 4.3344
48 1 6.8022 -4.8019 3.2429
49 1 7.0101 -6.1474 4.3136
50 1 4.3276 -2.1328 0.4996
51 1 4.6204 -3.2531 -0.8342
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036715032.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:20:28
Heat of formation + Delta-G solvation = -1.772685 kcal
Electronic energy + Delta-G solvation = -32288.905838 eV
Core-core repulsion = 28189.982189 eV
Total energy + Delta-G solvation = -4098.923649 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-44.61620 -41.51968 -39.85919 -37.13280 -36.68597 -35.98088 -34.70462 -33.43002
-32.97790 -31.31459 -30.00354 -28.43041 -28.09185 -26.67977 -25.64136 -24.81021
-24.17039 -23.25069 -22.23801 -21.95132 -20.83626 -19.63877 -19.45572 -18.57525
-18.08483 -17.38813 -16.99478 -16.67626 -16.34623 -16.25361 -16.03483 -15.61437
-15.41476 -15.12588 -14.78357 -14.67242 -14.50794 -14.40714 -14.29430 -13.94622
-13.80053 -13.77132 -13.50914 -13.25150 -13.11629 -13.04058 -12.66340 -12.57128
-12.48818 -12.42909 -12.25682 -12.13828 -12.01189 -11.97173 -11.91243 -11.82823
-11.65396 -11.39034 -11.23175 -10.76895 -10.42458 -9.99585 -9.58669 -9.04112
-8.37730 -5.20597 -0.03214 0.86949 1.37901 1.54152 1.62243 1.80982
1.83944 2.12186 2.60925 2.68060 3.11481 3.37273 3.40355 3.53681
3.62564 3.80797 3.90004 3.92195 4.06384 4.07350 4.13189 4.16551
4.24117 4.34049 4.38113 4.42354 4.44475 4.54438 4.59936 4.66828
4.73484 4.77254 4.78926 4.82615 4.88172 4.89135 4.91612 5.00366
5.03337 5.07006 5.09080 5.23098 5.24015 5.31430 5.32074 5.35401
5.46347 5.63088 5.69185 6.20941 6.31931 6.44800 6.88295 6.94901
7.74088 8.30565 8.97769
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013935 B = 0.003125 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2008.871783 B = 8958.532537 C = 9999.129016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.047 3.953
3 O -0.189 6.189
4 C 0.208 3.792
5 C 0.000 4.000
6 C -0.145 4.145
7 C -0.148 4.148
8 N -0.473 5.473
9 C -0.101 4.101
10 C 0.596 3.404
11 O -0.563 6.563
12 N -0.586 5.586
13 C 0.120 3.880
14 C -0.121 4.121
15 C 0.169 3.831
16 H 0.037 0.963
17 C -0.094 4.094
18 H 0.073 0.927
19 C -0.105 4.105
20 C 0.149 3.851
21 N -0.620 5.620
22 C -0.346 4.346
23 H 0.066 0.934
24 C -0.075 4.075
25 N -0.942 5.942
26 Si 1.102 2.898
27 H -0.292 1.292
28 H -0.273 1.273
29 H -0.288 1.288
30 C 0.105 3.895
31 H 0.100 0.900
32 H 0.108 0.892
33 H 0.101 0.899
34 H 0.123 0.877
35 H 0.062 0.938
36 H 0.097 0.903
37 H 0.056 0.944
38 H 0.050 0.950
39 H 0.097 0.903
40 H 0.063 0.937
41 H 0.087 0.913
42 H 0.091 0.909
43 H 0.062 0.938
44 H 0.038 0.962
45 H 0.053 0.947
46 H 0.096 0.904
47 H 0.008 0.992
48 H 0.004 0.996
49 H 0.258 0.742
50 H 0.143 0.857
51 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.353 22.363 -14.602 27.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.010 4.010
3 O -0.077 6.077
4 C -0.001 4.001
5 C -0.019 4.019
6 C -0.203 4.203
7 C -0.206 4.206
8 N -0.202 5.202
9 C -0.219 4.219
10 C 0.385 3.615
11 O -0.443 6.443
12 N -0.316 5.316
13 C -0.002 4.002
14 C -0.161 4.161
15 C 0.063 3.937
16 H 0.054 0.946
17 C -0.114 4.114
18 H 0.091 0.909
19 C -0.143 4.143
20 C 0.024 3.976
21 N -0.346 5.346
22 C -0.474 4.474
23 H 0.084 0.916
24 C -0.271 4.271
25 N -0.585 5.585
26 Si 0.928 3.072
27 H -0.218 1.218
28 H -0.199 1.199
29 H -0.215 1.215
30 C -0.018 4.018
31 H 0.119 0.881
32 H 0.127 0.873
33 H 0.120 0.880
34 H 0.141 0.859
35 H 0.081 0.919
36 H 0.115 0.885
37 H 0.075 0.925
38 H 0.070 0.930
39 H 0.116 0.884
40 H 0.082 0.918
41 H 0.105 0.895
42 H 0.109 0.891
43 H 0.080 0.920
44 H 0.057 0.943
45 H 0.072 0.928
46 H 0.115 0.885
47 H 0.026 0.974
48 H 0.022 0.978
49 H 0.069 0.931
50 H 0.160 0.840
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -6.388 21.167 -13.068 25.683
hybrid contribution -0.149 0.088 -1.139 1.152
sum -6.537 21.255 -14.207 26.388
Atomic orbital electron populations
1.20707 0.80776 1.06180 1.05479 1.24135 0.96095 0.82838 0.97970
1.84323 1.18048 1.35703 1.69578 1.27190 0.84721 0.90261 0.97938
1.20101 0.88362 0.94363 0.99068 1.21886 1.04277 0.99296 0.94810
1.21910 1.04313 0.99382 0.94999 1.70523 1.20733 1.09402 1.19551
1.21340 0.89852 0.95048 1.15708 1.17013 0.84870 0.83310 0.76353
1.90717 1.16995 1.83489 1.53127 1.47525 1.07531 1.06446 1.70097
1.21636 1.00771 0.79928 0.97893 1.22101 0.96987 1.00383 0.96601
1.20636 0.92708 0.93972 0.86416 0.94565 1.20690 1.00156 0.94165
0.96360 0.90855 1.22317 1.01127 0.96321 0.94529 1.21205 0.93637
0.87479 0.95329 1.45076 1.63841 1.10598 1.15093 1.19889 1.33605
0.92543 1.01324 0.91593 1.26844 0.97007 1.04033 0.99231 1.70912
1.10396 1.37698 1.39501 0.83022 0.74749 0.74898 0.74576 1.21819
1.19906 1.21463 1.21315 0.78180 1.03262 0.99045 0.88136 0.87318
0.88044 0.85889 0.91869 0.88464 0.92498 0.93041 0.88399 0.91833
0.89507 0.89109 0.91955 0.94291 0.92843 0.88547 0.97372 0.97848
0.93135 0.83994 0.91383
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.28 9.94 71.24 0.71 -0.57 16
2 C 0.05 1.07 7.44 25.19 0.19 1.26 16
3 O -0.19 -3.89 10.73 0.43 0.00 -3.89 16
4 C 0.21 4.17 6.81 88.39 0.60 4.77 16
5 C 0.00 0.00 3.39 -11.54 -0.04 -0.04 16
6 C -0.14 -1.22 9.17 71.98 0.66 -0.56 16
7 C -0.15 -1.49 9.18 71.98 0.66 -0.83 16
8 N -0.47 -11.99 7.71 -293.03 -2.26 -14.25 16
9 C -0.10 -2.83 6.69 40.41 0.27 -2.56 16
10 C 0.60 19.18 7.67 86.66 0.66 19.84 16
11 O -0.56 -19.53 14.18 -4.08 -0.06 -19.59 16
12 N -0.59 -18.65 2.99 -835.05 -2.50 -21.15 16
13 C 0.12 3.83 6.43 86.30 0.55 4.39 16
14 C -0.12 -4.70 5.18 30.59 0.16 -4.54 16
15 C 0.17 7.04 3.41 44.32 0.15 7.19 16
16 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
17 C -0.09 -3.25 2.45 -12.25 -0.03 -3.28 16
18 H 0.07 2.39 8.05 -2.38 -0.02 2.38 16
19 C -0.10 -3.89 6.37 31.22 0.20 -3.69 16
20 C 0.15 7.36 5.27 86.81 0.46 7.82 16
21 N -0.62 -32.35 3.05 -672.77 -2.05 -34.40 16
22 C -0.35 -20.04 9.57 84.03 0.80 -19.24 16
23 H 0.07 3.79 8.02 -2.91 -0.02 3.77 16
24 C -0.07 -4.43 5.05 84.86 0.43 -4.00 16
25 N -0.94 -59.29 12.72 21.65 0.28 -59.02 16
26 Si 1.10 53.08 30.03 68.60 2.06 55.14 16
27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16
28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
29 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16
30 C 0.10 3.11 5.54 85.42 0.47 3.58 16
31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
33 H 0.10 2.06 6.38 -2.38 -0.02 2.04 16
34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
36 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16
37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
38 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16
39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16
40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16
42 H 0.09 2.90 7.00 -2.39 -0.02 2.89 16
43 H 0.06 2.50 8.12 -2.39 -0.02 2.48 16
44 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16
45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
46 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16
47 H 0.01 0.45 7.62 -2.38 -0.02 0.43 16
48 H 0.00 0.20 6.68 -2.38 -0.02 0.19 16
49 H 0.26 16.36 5.82 -92.70 -0.54 15.82 16
50 H 0.14 4.14 3.86 -23.76 -0.09 4.04 16
51 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
Total: -1.00 -74.96 395.96 3.46 -71.50
By element:
Atomic # 1 Polarization: 15.04 SS G_CDS: 1.07 Total: 16.11 kcal
Atomic # 6 Polarization: 2.63 SS G_CDS: 6.91 Total: 9.55 kcal
Atomic # 7 Polarization: -122.29 SS G_CDS: -6.53 Total: -128.82 kcal
Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.48 kcal
Atomic # 14 Polarization: 53.08 SS G_CDS: 2.06 Total: 55.14 kcal
Total: -74.96 3.46 -71.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036715032.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.732 kcal
(2) G-P(sol) polarization free energy of solvation -74.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.505 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.773 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds