Wall clock time and date at job start Wed Apr 1 2020 05:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34251 * 126.52428 * 2 1 4 4 C 1.34051 * 108.22732 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.38089 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.46855 * 300.02674 * 5 4 3 7 7 C 1.53001 * 109.47079 * 60.02440 * 5 4 3 8 8 N 1.29937 * 109.24166 * 359.74227 * 4 3 2 9 9 C 1.36068 * 108.47910 * 0.41174 * 8 4 3 10 10 C 1.47415 * 126.45011 * 179.86164 * 9 8 4 11 11 O 1.21616 * 119.99963 * 185.42046 * 10 9 8 12 12 N 1.34779 * 120.00273 * 5.41659 * 10 9 8 13 13 C 1.46823 * 120.30266 * 176.69559 * 12 10 9 14 14 C 1.52960 * 107.39883 * 235.00423 * 13 12 10 15 15 C 1.53041 * 110.00109 * 298.54535 * 14 13 12 16 16 H 1.08996 * 110.62578 * 289.28698 * 15 14 13 17 17 C 1.51784 * 112.25256 * 52.95200 * 15 14 13 18 18 H 1.09009 * 105.74334 * 207.28064 * 17 15 14 19 19 C 1.53386 * 105.82098 * 95.44070 * 17 15 14 20 20 C 1.54466 * 102.53496 * 29.53500 * 19 17 15 21 21 N 1.46868 * 106.66817 * 332.27857 * 20 19 17 22 22 C 1.36934 * 125.33915 * 195.32851 * 21 20 19 23 23 H 1.07997 * 119.99995 * 180.02562 * 22 21 20 24 24 C 1.38808 * 119.99903 * 0.04999 * 22 21 20 25 25 N 1.31618 * 120.00337 * 325.27492 * 24 22 21 26 26 Si 1.86800 * 119.99910 * 145.27927 * 24 22 21 27 27 H 1.48500 * 109.47276 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47445 * 59.99743 * 26 24 22 29 29 H 1.48501 * 109.47208 * 299.99564 * 26 24 22 30 30 C 1.45259 * 120.15078 * 356.92954 * 12 10 9 31 31 H 1.08999 * 109.47107 * 269.96063 * 1 2 3 32 32 H 1.08997 * 109.47115 * 29.96147 * 1 2 3 33 33 H 1.09005 * 109.47012 * 149.95630 * 1 2 3 34 34 H 1.09003 * 109.47044 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47731 * 59.99876 * 6 5 4 36 36 H 1.09008 * 109.47049 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47415 * 299.99708 * 6 5 4 38 38 H 1.09005 * 109.46731 * 60.00064 * 7 5 4 39 39 H 1.08996 * 109.47133 * 180.02562 * 7 5 4 40 40 H 1.09003 * 109.46944 * 300.00371 * 7 5 4 41 41 H 1.09001 * 109.86750 * 115.53607 * 13 12 10 42 42 H 1.09000 * 109.87257 * 354.48089 * 13 12 10 43 43 H 1.09000 * 109.38469 * 178.38448 * 14 13 12 44 44 H 1.09006 * 109.38337 * 58.70988 * 14 13 12 45 45 H 1.09001 * 110.79404 * 271.28138 * 19 17 15 46 46 H 1.08995 * 110.80125 * 147.79786 * 19 17 15 47 47 H 1.09006 * 110.02378 * 212.97114 * 20 19 17 48 48 H 1.09008 * 110.05568 * 91.59754 * 20 19 17 49 49 H 0.97005 * 119.99927 * 354.48710 * 25 24 22 50 50 H 1.09005 * 108.84546 * 22.00260 * 30 12 10 51 51 H 1.08996 * 107.99395 * 264.71652 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6580 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.7756 2.4341 -1.2503 7 6 4.7776 2.4336 1.2481 8 7 3.6002 -0.6412 0.0046 9 6 2.3170 -1.0937 -0.0006 10 6 1.8854 -2.5033 -0.0003 11 8 0.7052 -2.7778 -0.1048 12 7 2.7986 -3.4877 0.1157 13 6 2.3706 -4.8902 0.1895 14 6 2.9739 -5.4861 1.4626 15 6 4.5018 -5.4334 1.3922 16 1 4.8771 -6.1462 0.6580 17 6 5.0151 -4.0390 1.0821 18 1 5.9737 -4.1810 0.5828 19 6 5.3440 -3.4033 2.4387 20 6 5.7276 -4.6278 3.2986 21 7 5.0025 -5.7773 2.7418 22 6 4.8230 -6.9805 3.3704 23 1 4.2735 -7.7698 2.8790 24 6 5.3469 -7.1856 4.6394 25 7 6.4927 -6.6320 4.9758 26 14 4.4259 -8.2475 5.8696 27 1 5.1908 -8.3088 7.1410 28 1 4.2688 -9.6183 5.3205 29 1 3.0862 -7.6601 6.1253 30 6 4.2141 -3.1667 0.1735 31 1 -0.3633 -0.0007 1.0277 32 1 -0.3633 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 5.6944 0.9379 -0.0021 35 1 3.8743 3.0468 -1.2496 36 1 5.6541 3.0794 -1.2511 37 1 4.7866 1.8051 -2.1405 38 1 4.7899 1.8042 2.1380 39 1 5.6555 3.0796 1.2473 40 1 3.8761 3.0464 1.2489 41 1 2.7334 -5.4346 -0.6823 42 1 1.2829 -4.9438 0.2347 43 1 2.6520 -6.5225 1.5647 44 1 2.6316 -4.9159 2.3263 45 1 4.4705 -2.8989 2.8517 46 1 6.1840 -2.7145 2.3499 47 1 5.4295 -4.4647 4.3344 48 1 6.8022 -4.8019 3.2429 49 1 7.0101 -6.1474 4.3136 50 1 4.3276 -2.1328 0.4996 51 1 4.6204 -3.2531 -0.8342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036715032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:28 Heat of formation + Delta-G solvation = -1.772685 kcal Electronic energy + Delta-G solvation = -32288.905838 eV Core-core repulsion = 28189.982189 eV Total energy + Delta-G solvation = -4098.923649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.61620 -41.51968 -39.85919 -37.13280 -36.68597 -35.98088 -34.70462 -33.43002 -32.97790 -31.31459 -30.00354 -28.43041 -28.09185 -26.67977 -25.64136 -24.81021 -24.17039 -23.25069 -22.23801 -21.95132 -20.83626 -19.63877 -19.45572 -18.57525 -18.08483 -17.38813 -16.99478 -16.67626 -16.34623 -16.25361 -16.03483 -15.61437 -15.41476 -15.12588 -14.78357 -14.67242 -14.50794 -14.40714 -14.29430 -13.94622 -13.80053 -13.77132 -13.50914 -13.25150 -13.11629 -13.04058 -12.66340 -12.57128 -12.48818 -12.42909 -12.25682 -12.13828 -12.01189 -11.97173 -11.91243 -11.82823 -11.65396 -11.39034 -11.23175 -10.76895 -10.42458 -9.99585 -9.58669 -9.04112 -8.37730 -5.20597 -0.03214 0.86949 1.37901 1.54152 1.62243 1.80982 1.83944 2.12186 2.60925 2.68060 3.11481 3.37273 3.40355 3.53681 3.62564 3.80797 3.90004 3.92195 4.06384 4.07350 4.13189 4.16551 4.24117 4.34049 4.38113 4.42354 4.44475 4.54438 4.59936 4.66828 4.73484 4.77254 4.78926 4.82615 4.88172 4.89135 4.91612 5.00366 5.03337 5.07006 5.09080 5.23098 5.24015 5.31430 5.32074 5.35401 5.46347 5.63088 5.69185 6.20941 6.31931 6.44800 6.88295 6.94901 7.74088 8.30565 8.97769 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.003125 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.871783 B = 8958.532537 C = 9999.129016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.047 3.953 3 O -0.189 6.189 4 C 0.208 3.792 5 C 0.000 4.000 6 C -0.145 4.145 7 C -0.148 4.148 8 N -0.473 5.473 9 C -0.101 4.101 10 C 0.596 3.404 11 O -0.563 6.563 12 N -0.586 5.586 13 C 0.120 3.880 14 C -0.121 4.121 15 C 0.169 3.831 16 H 0.037 0.963 17 C -0.094 4.094 18 H 0.073 0.927 19 C -0.105 4.105 20 C 0.149 3.851 21 N -0.620 5.620 22 C -0.346 4.346 23 H 0.066 0.934 24 C -0.075 4.075 25 N -0.942 5.942 26 Si 1.102 2.898 27 H -0.292 1.292 28 H -0.273 1.273 29 H -0.288 1.288 30 C 0.105 3.895 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.008 0.992 48 H 0.004 0.996 49 H 0.258 0.742 50 H 0.143 0.857 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 22.363 -14.602 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 O -0.077 6.077 4 C -0.001 4.001 5 C -0.019 4.019 6 C -0.203 4.203 7 C -0.206 4.206 8 N -0.202 5.202 9 C -0.219 4.219 10 C 0.385 3.615 11 O -0.443 6.443 12 N -0.316 5.316 13 C -0.002 4.002 14 C -0.161 4.161 15 C 0.063 3.937 16 H 0.054 0.946 17 C -0.114 4.114 18 H 0.091 0.909 19 C -0.143 4.143 20 C 0.024 3.976 21 N -0.346 5.346 22 C -0.474 4.474 23 H 0.084 0.916 24 C -0.271 4.271 25 N -0.585 5.585 26 Si 0.928 3.072 27 H -0.218 1.218 28 H -0.199 1.199 29 H -0.215 1.215 30 C -0.018 4.018 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.026 0.974 48 H 0.022 0.978 49 H 0.069 0.931 50 H 0.160 0.840 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.388 21.167 -13.068 25.683 hybrid contribution -0.149 0.088 -1.139 1.152 sum -6.537 21.255 -14.207 26.388 Atomic orbital electron populations 1.20707 0.80776 1.06180 1.05479 1.24135 0.96095 0.82838 0.97970 1.84323 1.18048 1.35703 1.69578 1.27190 0.84721 0.90261 0.97938 1.20101 0.88362 0.94363 0.99068 1.21886 1.04277 0.99296 0.94810 1.21910 1.04313 0.99382 0.94999 1.70523 1.20733 1.09402 1.19551 1.21340 0.89852 0.95048 1.15708 1.17013 0.84870 0.83310 0.76353 1.90717 1.16995 1.83489 1.53127 1.47525 1.07531 1.06446 1.70097 1.21636 1.00771 0.79928 0.97893 1.22101 0.96987 1.00383 0.96601 1.20636 0.92708 0.93972 0.86416 0.94565 1.20690 1.00156 0.94165 0.96360 0.90855 1.22317 1.01127 0.96321 0.94529 1.21205 0.93637 0.87479 0.95329 1.45076 1.63841 1.10598 1.15093 1.19889 1.33605 0.92543 1.01324 0.91593 1.26844 0.97007 1.04033 0.99231 1.70912 1.10396 1.37698 1.39501 0.83022 0.74749 0.74898 0.74576 1.21819 1.19906 1.21463 1.21315 0.78180 1.03262 0.99045 0.88136 0.87318 0.88044 0.85889 0.91869 0.88464 0.92498 0.93041 0.88399 0.91833 0.89507 0.89109 0.91955 0.94291 0.92843 0.88547 0.97372 0.97848 0.93135 0.83994 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.94 71.24 0.71 -0.57 16 2 C 0.05 1.07 7.44 25.19 0.19 1.26 16 3 O -0.19 -3.89 10.73 0.43 0.00 -3.89 16 4 C 0.21 4.17 6.81 88.39 0.60 4.77 16 5 C 0.00 0.00 3.39 -11.54 -0.04 -0.04 16 6 C -0.14 -1.22 9.17 71.98 0.66 -0.56 16 7 C -0.15 -1.49 9.18 71.98 0.66 -0.83 16 8 N -0.47 -11.99 7.71 -293.03 -2.26 -14.25 16 9 C -0.10 -2.83 6.69 40.41 0.27 -2.56 16 10 C 0.60 19.18 7.67 86.66 0.66 19.84 16 11 O -0.56 -19.53 14.18 -4.08 -0.06 -19.59 16 12 N -0.59 -18.65 2.99 -835.05 -2.50 -21.15 16 13 C 0.12 3.83 6.43 86.30 0.55 4.39 16 14 C -0.12 -4.70 5.18 30.59 0.16 -4.54 16 15 C 0.17 7.04 3.41 44.32 0.15 7.19 16 16 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 17 C -0.09 -3.25 2.45 -12.25 -0.03 -3.28 16 18 H 0.07 2.39 8.05 -2.38 -0.02 2.38 16 19 C -0.10 -3.89 6.37 31.22 0.20 -3.69 16 20 C 0.15 7.36 5.27 86.81 0.46 7.82 16 21 N -0.62 -32.35 3.05 -672.77 -2.05 -34.40 16 22 C -0.35 -20.04 9.57 84.03 0.80 -19.24 16 23 H 0.07 3.79 8.02 -2.91 -0.02 3.77 16 24 C -0.07 -4.43 5.05 84.86 0.43 -4.00 16 25 N -0.94 -59.29 12.72 21.65 0.28 -59.02 16 26 Si 1.10 53.08 30.03 68.60 2.06 55.14 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 30 C 0.10 3.11 5.54 85.42 0.47 3.58 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 2.06 6.38 -2.38 -0.02 2.04 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.09 2.90 7.00 -2.39 -0.02 2.89 16 43 H 0.06 2.50 8.12 -2.39 -0.02 2.48 16 44 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 47 H 0.01 0.45 7.62 -2.38 -0.02 0.43 16 48 H 0.00 0.20 6.68 -2.38 -0.02 0.19 16 49 H 0.26 16.36 5.82 -92.70 -0.54 15.82 16 50 H 0.14 4.14 3.86 -23.76 -0.09 4.04 16 51 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.96 395.96 3.46 -71.50 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.07 Total: 16.11 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.91 Total: 9.55 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -6.53 Total: -128.82 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.06 Total: 55.14 kcal Total: -74.96 3.46 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036715032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.732 kcal (2) G-P(sol) polarization free energy of solvation -74.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds