Wall clock time and date at job start Wed Apr 1 2020 04:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30013 * 127.33229 * 2 1 4 4 O 1.20660 * 112.30049 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15407 * 359.75090 * 4 3 2 6 6 C 1.50706 * 126.82753 * 180.30669 * 5 4 3 7 7 C 1.52999 * 109.46876 * 300.10596 * 6 5 4 8 8 C 1.52995 * 109.47336 * 60.10352 * 6 5 4 9 9 C 1.37356 * 106.34293 * 0.39220 * 5 4 3 10 10 C 1.47401 * 128.56535 * 179.90943 * 9 5 4 11 11 O 1.21611 * 120.00007 * 269.70520 * 10 9 5 12 12 N 1.34778 * 119.99930 * 89.69710 * 10 9 5 13 13 C 1.46595 * 119.67943 * 359.97438 * 12 10 9 14 14 C 1.53963 * 110.56760 * 227.84025 * 13 12 10 15 15 C 1.51811 * 107.28167 * 308.72968 * 14 13 12 16 16 H 1.09000 * 109.29403 * 306.56606 * 15 14 13 17 17 C 1.55676 * 107.48489 * 65.12393 * 15 14 13 18 18 H 1.08996 * 112.49115 * 50.67533 * 17 15 14 19 19 C 1.53743 * 100.09888 * 168.92795 * 17 15 14 20 20 C 1.55297 * 101.83998 * 320.73343 * 19 17 15 21 21 N 1.45459 * 117.16836 * 181.63679 * 15 14 13 22 22 C 1.36945 * 126.40667 * 31.14213 * 21 15 14 23 23 H 1.08000 * 119.99441 * 359.71550 * 22 21 15 24 24 C 1.38811 * 120.00031 * 179.71408 * 22 21 15 25 25 N 1.31619 * 120.00283 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47177 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46857 * 120.00139 * 26 24 22 29 29 H 1.48492 * 109.47220 * 239.99987 * 26 24 22 30 30 C 1.47715 * 119.68162 * 179.97438 * 12 10 9 31 31 H 1.08997 * 109.47206 * 269.99769 * 1 2 3 32 32 H 1.08995 * 109.47638 * 30.00289 * 1 2 3 33 33 H 1.09003 * 109.47496 * 150.00266 * 1 2 3 34 34 H 1.09002 * 109.46933 * 180.10658 * 6 5 4 35 35 H 1.09003 * 109.47050 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47406 * 300.00128 * 7 6 5 37 37 H 1.08999 * 109.47556 * 59.99832 * 7 6 5 38 38 H 1.08999 * 109.46948 * 60.00125 * 8 6 5 39 39 H 1.08999 * 109.47587 * 179.97438 * 8 6 5 40 40 H 1.08999 * 109.47385 * 300.00582 * 8 6 5 41 41 H 1.08996 * 109.26046 * 348.11699 * 13 12 10 42 42 H 1.08996 * 109.26084 * 107.59984 * 13 12 10 43 43 H 1.09001 * 109.88133 * 68.40744 * 14 13 12 44 44 H 1.08998 * 109.87706 * 189.41377 * 14 13 12 45 45 H 1.09000 * 110.95222 * 202.60599 * 19 17 15 46 46 H 1.08998 * 110.96074 * 78.86951 * 19 17 15 47 47 H 1.09001 * 109.91882 * 263.13411 * 20 19 17 48 48 H 1.08998 * 109.91870 * 141.82908 * 20 19 17 49 49 H 0.96998 * 120.00243 * 179.97438 * 25 24 22 50 50 H 1.09010 * 110.06869 * 8.71388 * 30 12 10 51 51 H 1.08997 * 110.07337 * 247.14069 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6493 -0.6007 0.0044 6 6 4.9712 -1.3245 0.0118 7 6 5.7707 -0.9388 -1.2344 8 6 5.7591 -0.9349 1.2640 9 6 2.3991 -1.1696 -0.0005 10 6 2.0401 -2.5992 0.0000 11 8 1.8916 -3.1892 -1.0530 12 7 1.8765 -3.2525 1.1674 13 6 2.0579 -2.5345 2.4326 14 6 2.9577 -3.3402 3.3875 15 6 2.3879 -4.7451 3.4662 16 1 1.3329 -4.6914 3.7346 17 6 2.5286 -5.3866 2.0547 18 1 3.5383 -5.2962 1.6544 19 6 2.1884 -6.8485 2.3879 20 6 2.8931 -7.0351 3.7591 21 7 3.0603 -5.6861 4.3485 22 6 3.7195 -5.3825 5.5098 23 1 3.7782 -4.3576 5.8452 24 6 4.3122 -6.3921 6.2557 25 7 4.2410 -7.6411 5.8465 26 14 5.2120 -5.9780 7.8394 27 1 5.1491 -4.5133 8.0760 28 1 4.5708 -6.6902 8.9738 29 1 6.6309 -6.4013 7.7277 30 6 1.5161 -4.6850 1.1598 31 1 -0.3633 0.0000 1.0276 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 4.7962 -2.4004 0.0126 35 1 6.7266 -1.4626 -1.2293 36 1 5.2095 -1.2163 -2.1266 37 1 5.9456 0.1371 -1.2353 38 1 5.1894 -1.2097 2.1518 39 1 6.7149 -1.4588 1.2696 40 1 5.9339 0.1409 1.2632 41 1 2.5196 -1.5674 2.2341 42 1 1.0859 -2.3796 2.9007 43 1 3.9761 -3.3703 3.0001 44 1 2.9510 -2.8832 4.3770 45 1 2.6035 -7.5252 1.6411 46 1 1.1112 -6.9866 2.4812 47 1 3.8680 -7.5010 3.6153 48 1 2.2764 -7.6520 4.4127 49 1 4.6554 -8.3465 6.3676 50 1 1.5759 -5.0803 0.1456 51 1 0.5097 -4.8197 1.5561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036742023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:38 Heat of formation + Delta-G solvation = 45.079538 kcal Electronic energy + Delta-G solvation = -32653.862842 eV Core-core repulsion = 28556.970858 eV Total energy + Delta-G solvation = -4096.891985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.03348 -40.25218 -38.29410 -36.27549 -35.44061 -34.71888 -32.75020 -31.63795 -31.19645 -29.62752 -28.97781 -28.19503 -27.43298 -25.43086 -24.57113 -23.12326 -22.93836 -22.43831 -20.34448 -20.04432 -19.67922 -18.99348 -17.94791 -17.52127 -16.68689 -16.23492 -16.00554 -15.67722 -15.15335 -14.75925 -14.57112 -14.22673 -13.92972 -13.71082 -13.68791 -13.56957 -13.43113 -13.15111 -13.04372 -13.01656 -12.64375 -12.48739 -12.45191 -11.74675 -11.74182 -11.62329 -11.55956 -11.50949 -11.46905 -11.05819 -10.89959 -10.85490 -10.78808 -10.34375 -10.15527 -10.05219 -9.99558 -9.90192 -9.69352 -9.58360 -9.40197 -8.67394 -8.63525 -6.88799 -5.76292 -3.09711 1.16756 1.75217 2.33379 2.63447 3.06615 3.35800 3.41253 3.43878 3.88727 3.99775 4.41695 4.45837 4.56922 4.75215 4.76112 4.93847 4.99051 5.01703 5.18278 5.20161 5.23049 5.27314 5.37995 5.38157 5.44321 5.48290 5.51937 5.54324 5.54728 5.60313 5.73343 5.75450 5.80654 5.82925 5.93377 5.95248 5.99729 6.07512 6.12111 6.15998 6.27913 6.41304 6.54681 6.56770 6.74963 6.99323 7.31985 7.50890 7.56836 7.76638 8.04319 8.06605 8.19411 9.14556 9.78215 10.45827 11.36201 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003390 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.030822 B = 8258.063157 C = 9037.812150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.052 3.948 3 N -0.357 5.357 4 O 0.099 5.901 5 C 0.027 3.973 6 C -0.017 4.017 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.241 4.241 10 C 0.596 3.404 11 O -0.533 6.533 12 N -0.593 5.593 13 C 0.113 3.887 14 C -0.128 4.128 15 C 0.169 3.831 16 H 0.022 0.978 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.226 4.226 23 H 0.079 0.921 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.908 3.092 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.126 3.874 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.252 0.748 50 H 0.091 0.909 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 13.061 -12.018 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 N -0.063 5.063 4 O 0.037 5.963 5 C -0.037 4.037 6 C -0.036 4.036 7 C -0.206 4.206 8 C -0.208 4.208 9 C -0.249 4.249 10 C 0.382 3.618 11 O -0.410 6.410 12 N -0.325 5.325 13 C -0.011 4.011 14 C -0.167 4.167 15 C 0.060 3.940 16 H 0.039 0.961 17 C -0.144 4.144 18 H 0.099 0.901 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.739 3.261 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.004 3.996 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.110 0.890 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.069 13.936 -12.355 18.875 hybrid contribution 0.354 -0.612 1.001 1.225 sum -2.715 13.324 -11.355 17.715 Atomic orbital electron populations 1.20214 0.85228 1.04187 1.03813 1.24710 0.98516 0.86534 1.01250 1.73613 0.89181 1.23354 1.20193 1.84499 1.21342 1.22568 1.67881 1.24664 0.96924 0.83563 0.98554 1.19934 0.86920 0.98734 0.98021 1.21875 1.00140 1.02447 0.96110 1.21903 1.00470 1.02405 0.95991 1.21898 0.92758 0.95435 1.14770 1.16980 0.77011 0.83935 0.83902 1.90799 1.51283 1.67874 1.31066 1.48254 1.67489 1.11236 1.05496 1.21787 1.00404 0.95046 0.83827 1.21946 0.99040 0.97139 0.98602 1.20741 0.94951 0.89359 0.88935 0.96113 1.22696 0.98755 0.96355 0.96597 0.90137 1.22724 1.00237 0.94517 1.00020 1.21534 0.98477 0.86758 0.87929 1.44207 1.62870 1.01676 1.23146 1.19023 1.26488 0.93264 0.96641 0.90362 1.24781 1.01024 0.95407 0.99098 1.69944 1.48883 0.98774 1.39165 0.86101 0.79312 0.77429 0.83254 1.20531 1.21780 1.21779 1.21721 0.98167 0.77949 1.01749 0.89604 0.89981 0.89796 0.87888 0.90878 0.91983 0.91655 0.91590 0.90746 0.91663 0.90750 0.91497 0.91281 0.90491 0.92002 0.92298 0.92658 0.94381 0.93783 0.89027 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 36.00 0.38 -0.34 16 2 C 0.05 0.64 7.59 -79.77 -0.61 0.04 16 3 N -0.36 -4.64 12.01 34.78 0.42 -4.23 16 4 O 0.10 1.22 11.06 18.64 0.21 1.42 16 5 C 0.03 0.32 5.82 -34.63 -0.20 0.11 16 6 C -0.02 -0.17 3.33 -91.77 -0.31 -0.47 16 7 C -0.15 -1.25 9.17 37.16 0.34 -0.91 16 8 C -0.15 -1.35 9.17 37.15 0.34 -1.01 16 9 C -0.24 -3.18 4.21 -102.89 -0.43 -3.61 16 10 C 0.60 8.77 7.16 -12.53 -0.09 8.68 16 11 O -0.53 -9.38 16.46 5.27 0.09 -9.29 16 12 N -0.59 -8.24 3.00 -173.75 -0.52 -8.76 16 13 C 0.11 1.46 6.22 -3.49 -0.02 1.44 16 14 C -0.13 -2.03 5.48 -26.83 -0.15 -2.18 16 15 C 0.17 3.16 2.59 -67.67 -0.18 2.98 16 16 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 17 C -0.12 -2.06 2.86 -89.18 -0.26 -2.32 16 18 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 19 C -0.14 -2.39 6.53 -25.13 -0.16 -2.56 16 20 C 0.18 4.09 5.45 -1.91 -0.01 4.08 16 21 N -0.59 -14.15 3.35 -162.73 -0.54 -14.70 16 22 C -0.23 -5.92 9.88 -15.06 -0.15 -6.07 16 23 H 0.08 1.97 7.21 -52.49 -0.38 1.59 16 24 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 25 N -0.92 -26.20 10.44 55.49 0.58 -25.62 16 26 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 C 0.13 1.80 5.96 -3.75 -0.02 1.78 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.16 7.70 -51.93 -0.40 0.76 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.90 6.10 -51.93 -0.32 0.59 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 44 H 0.08 1.25 7.62 -51.93 -0.40 0.86 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 47 H 0.06 1.43 7.21 -51.93 -0.37 1.05 16 48 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.09 1.35 6.99 -51.92 -0.36 0.98 16 51 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -31.01 403.49 -8.85 -39.86 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.52 Total: -0.51 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.62 Total: -0.61 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.07 Total: -53.30 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.29 Total: -7.87 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.01 -8.85 -39.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.939 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds