Wall clock time and date at job start Wed Apr 1 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30013 * 127.33229 * 2 1 4 4 O 1.20660 * 112.30049 * 180.02562 * 3 2 1 5 5 C 1.33495 * 113.15407 * 359.75090 * 4 3 2 6 6 C 1.50706 * 126.82753 * 180.30669 * 5 4 3 7 7 C 1.52999 * 109.46876 * 300.10596 * 6 5 4 8 8 C 1.52995 * 109.47336 * 60.10352 * 6 5 4 9 9 C 1.37356 * 106.34293 * 0.39220 * 5 4 3 10 10 C 1.47401 * 128.56535 * 179.90943 * 9 5 4 11 11 O 1.21611 * 120.00007 * 269.70520 * 10 9 5 12 12 N 1.34778 * 119.99930 * 89.69710 * 10 9 5 13 13 C 1.46595 * 119.67943 * 359.97438 * 12 10 9 14 14 C 1.53963 * 110.56760 * 227.84025 * 13 12 10 15 15 C 1.51811 * 107.28167 * 308.72968 * 14 13 12 16 16 H 1.09000 * 109.29403 * 306.56606 * 15 14 13 17 17 C 1.55676 * 107.48489 * 65.12393 * 15 14 13 18 18 H 1.08996 * 112.49115 * 50.67533 * 17 15 14 19 19 C 1.53743 * 100.09888 * 168.92795 * 17 15 14 20 20 C 1.55297 * 101.83998 * 320.73343 * 19 17 15 21 21 N 1.45459 * 117.16836 * 181.63679 * 15 14 13 22 22 C 1.36945 * 126.40667 * 31.14213 * 21 15 14 23 23 H 1.08000 * 119.99441 * 359.71550 * 22 21 15 24 24 C 1.38811 * 120.00031 * 179.71408 * 22 21 15 25 25 N 1.31619 * 120.00283 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99811 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47177 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46857 * 120.00139 * 26 24 22 29 29 H 1.48492 * 109.47220 * 239.99987 * 26 24 22 30 30 C 1.47715 * 119.68162 * 179.97438 * 12 10 9 31 31 H 1.08997 * 109.47206 * 269.99769 * 1 2 3 32 32 H 1.08995 * 109.47638 * 30.00289 * 1 2 3 33 33 H 1.09003 * 109.47496 * 150.00266 * 1 2 3 34 34 H 1.09002 * 109.46933 * 180.10658 * 6 5 4 35 35 H 1.09003 * 109.47050 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47406 * 300.00128 * 7 6 5 37 37 H 1.08999 * 109.47556 * 59.99832 * 7 6 5 38 38 H 1.08999 * 109.46948 * 60.00125 * 8 6 5 39 39 H 1.08999 * 109.47587 * 179.97438 * 8 6 5 40 40 H 1.08999 * 109.47385 * 300.00582 * 8 6 5 41 41 H 1.08996 * 109.26046 * 348.11699 * 13 12 10 42 42 H 1.08996 * 109.26084 * 107.59984 * 13 12 10 43 43 H 1.09001 * 109.88133 * 68.40744 * 14 13 12 44 44 H 1.08998 * 109.87706 * 189.41377 * 14 13 12 45 45 H 1.09000 * 110.95222 * 202.60599 * 19 17 15 46 46 H 1.08998 * 110.96074 * 78.86951 * 19 17 15 47 47 H 1.09001 * 109.91882 * 263.13411 * 20 19 17 48 48 H 1.08998 * 109.91870 * 141.82908 * 20 19 17 49 49 H 0.96998 * 120.00243 * 179.97438 * 25 24 22 50 50 H 1.09010 * 110.06869 * 8.71388 * 30 12 10 51 51 H 1.08997 * 110.07337 * 247.14069 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6493 -0.6007 0.0044 6 6 4.9712 -1.3245 0.0118 7 6 5.7707 -0.9388 -1.2344 8 6 5.7591 -0.9349 1.2640 9 6 2.3991 -1.1696 -0.0005 10 6 2.0401 -2.5992 0.0000 11 8 1.8916 -3.1892 -1.0530 12 7 1.8765 -3.2525 1.1674 13 6 2.0579 -2.5345 2.4326 14 6 2.9577 -3.3402 3.3875 15 6 2.3879 -4.7451 3.4662 16 1 1.3329 -4.6914 3.7346 17 6 2.5286 -5.3866 2.0547 18 1 3.5383 -5.2962 1.6544 19 6 2.1884 -6.8485 2.3879 20 6 2.8931 -7.0351 3.7591 21 7 3.0603 -5.6861 4.3485 22 6 3.7195 -5.3825 5.5098 23 1 3.7782 -4.3576 5.8452 24 6 4.3122 -6.3921 6.2557 25 7 4.2410 -7.6411 5.8465 26 14 5.2120 -5.9780 7.8394 27 1 5.1491 -4.5133 8.0760 28 1 4.5708 -6.6902 8.9738 29 1 6.6309 -6.4013 7.7277 30 6 1.5161 -4.6850 1.1598 31 1 -0.3633 0.0000 1.0276 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 4.7962 -2.4004 0.0126 35 1 6.7266 -1.4626 -1.2293 36 1 5.2095 -1.2163 -2.1266 37 1 5.9456 0.1371 -1.2353 38 1 5.1894 -1.2097 2.1518 39 1 6.7149 -1.4588 1.2696 40 1 5.9339 0.1409 1.2632 41 1 2.5196 -1.5674 2.2341 42 1 1.0859 -2.3796 2.9007 43 1 3.9761 -3.3703 3.0001 44 1 2.9510 -2.8832 4.3770 45 1 2.6035 -7.5252 1.6411 46 1 1.1112 -6.9866 2.4812 47 1 3.8680 -7.5010 3.6153 48 1 2.2764 -7.6520 4.4127 49 1 4.6554 -8.3465 6.3676 50 1 1.5759 -5.0803 0.1456 51 1 0.5097 -4.8197 1.5561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036742023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:37 Heat of formation + Delta-G solvation = 28.554855 kcal Electronic energy + Delta-G solvation = -32654.579406 eV Core-core repulsion = 28556.970858 eV Total energy + Delta-G solvation = -4097.608549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.97595 -41.50569 -39.71623 -37.09669 -36.84768 -35.66165 -34.49455 -33.06238 -32.22365 -31.18928 -29.88030 -29.60627 -28.12835 -26.85240 -26.13751 -24.20413 -23.92855 -23.79679 -21.88359 -21.42788 -20.82558 -20.07610 -19.00872 -18.69704 -18.15590 -17.52577 -17.05821 -16.86787 -16.69824 -16.11879 -15.84494 -15.55196 -15.34666 -14.91682 -14.71591 -14.46223 -14.38341 -14.24790 -14.11997 -14.06842 -13.86281 -13.77867 -13.32955 -13.15269 -13.09702 -13.09409 -12.72056 -12.58671 -12.49573 -12.36234 -12.30006 -12.12338 -11.95813 -11.87942 -11.79824 -11.60615 -11.52277 -11.30534 -11.03295 -10.89595 -10.69467 -10.42871 -9.82900 -8.84847 -7.81155 -5.15168 0.22366 0.81739 1.20713 1.47856 1.48325 1.57860 1.62865 2.02075 2.52147 2.99753 3.11177 3.36881 3.38737 3.55413 3.71469 3.78862 3.84676 3.96185 4.00348 4.01274 4.13052 4.17018 4.21537 4.37477 4.40022 4.47768 4.55693 4.58429 4.65555 4.69193 4.70760 4.74109 4.75699 4.80153 4.85469 4.87268 4.89587 5.02573 5.04353 5.08356 5.10028 5.19122 5.25620 5.30171 5.41261 5.54157 5.55345 5.68963 5.79937 6.17665 6.23355 6.89687 7.12176 7.13456 7.82418 8.50616 9.30804 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003390 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.030822 B = 8258.063157 C = 9037.812150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.372 5.372 4 O 0.096 5.904 5 C 0.038 3.962 6 C -0.017 4.017 7 C -0.145 4.145 8 C -0.147 4.147 9 C -0.265 4.265 10 C 0.604 3.396 11 O -0.564 6.564 12 N -0.590 5.590 13 C 0.123 3.877 14 C -0.120 4.120 15 C 0.159 3.841 16 H 0.026 0.974 17 C -0.108 4.108 18 H 0.066 0.934 19 C -0.121 4.121 20 C 0.182 3.818 21 N -0.615 5.615 22 C -0.226 4.226 23 H 0.087 0.913 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.970 3.030 27 H -0.263 1.263 28 H -0.297 1.297 29 H -0.296 1.296 30 C 0.134 3.866 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.017 0.983 48 H 0.003 0.997 49 H 0.244 0.756 50 H 0.092 0.908 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 15.285 -12.613 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.080 5.080 4 O 0.037 5.963 5 C -0.026 4.026 6 C -0.037 4.037 7 C -0.202 4.202 8 C -0.204 4.204 9 C -0.272 4.272 10 C 0.391 3.609 11 O -0.444 6.444 12 N -0.321 5.321 13 C 0.000 4.000 14 C -0.159 4.159 15 C 0.052 3.948 16 H 0.043 0.957 17 C -0.128 4.128 18 H 0.085 0.915 19 C -0.160 4.160 20 C 0.057 3.943 21 N -0.339 5.339 22 C -0.355 4.355 23 H 0.105 0.895 24 C -0.260 4.260 25 N -0.603 5.603 26 Si 0.799 3.201 27 H -0.187 1.187 28 H -0.225 1.225 29 H -0.224 1.224 30 C 0.012 3.988 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.036 0.964 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.111 0.889 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.715 16.210 -12.958 21.083 hybrid contribution 0.547 -1.290 1.165 1.822 sum -3.168 14.920 -11.793 19.280 Atomic orbital electron populations 1.20362 0.83290 1.04790 1.05088 1.25157 0.99727 0.85831 1.00029 1.73610 0.89410 1.23743 1.21266 1.84491 1.21305 1.22550 1.67976 1.24974 0.97283 0.83468 0.96896 1.20018 0.86563 0.97720 0.99399 1.21873 1.00383 1.03261 0.94728 1.21892 1.00512 1.03226 0.94799 1.21830 0.93645 0.94879 1.16841 1.17067 0.76120 0.84360 0.83402 1.90783 1.52716 1.68733 1.32128 1.48246 1.67080 1.11059 1.05713 1.21744 1.00793 0.94679 0.82740 1.21836 0.99074 0.95638 0.99323 1.20969 0.94582 0.90302 0.88942 0.95684 1.22518 0.98908 0.95602 0.95807 0.91515 1.22589 1.00889 0.95638 0.96882 1.21299 0.96448 0.86252 0.90257 1.44478 1.62877 1.03103 1.23434 1.19420 1.25312 0.93525 0.97201 0.89479 1.25561 1.02714 0.95464 1.02304 1.70163 1.50339 0.99544 1.40259 0.85125 0.77516 0.77930 0.79518 1.18679 1.22451 1.22360 1.21634 0.98079 0.77910 1.01168 0.87891 0.88713 0.89844 0.89233 0.89352 0.92900 0.90715 0.92664 0.89752 0.90607 0.89504 0.89564 0.92219 0.90727 0.90369 0.90241 0.96442 0.97879 0.94686 0.88931 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.49 71.24 0.75 -0.50 16 2 C 0.05 1.24 7.59 45.15 0.34 1.58 16 3 N -0.37 -8.97 12.01 -44.79 -0.54 -9.51 16 4 O 0.10 2.20 11.06 76.96 0.85 3.05 16 5 C 0.04 0.84 5.82 25.48 0.15 0.98 16 6 C -0.02 -0.33 3.33 -11.54 -0.04 -0.36 16 7 C -0.15 -2.21 9.17 71.98 0.66 -1.55 16 8 C -0.15 -2.39 9.17 71.98 0.66 -1.73 16 9 C -0.26 -6.51 4.21 -18.75 -0.08 -6.59 16 10 C 0.60 16.72 7.16 86.66 0.62 17.34 16 11 O -0.56 -19.13 16.46 -4.07 -0.07 -19.20 16 12 N -0.59 -15.07 3.00 -821.87 -2.46 -17.53 16 13 C 0.12 2.88 6.22 86.69 0.54 3.42 16 14 C -0.12 -3.60 5.48 30.53 0.17 -3.43 16 15 C 0.16 5.78 2.59 45.72 0.12 5.90 16 16 H 0.03 0.93 7.94 -2.39 -0.02 0.91 16 17 C -0.11 -3.46 2.86 -9.86 -0.03 -3.49 16 18 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.12 -4.16 6.53 31.63 0.21 -3.95 16 20 C 0.18 8.67 5.45 86.85 0.47 9.14 16 21 N -0.61 -29.51 3.35 -668.76 -2.24 -31.75 16 22 C -0.23 -11.88 9.88 84.03 0.83 -11.05 16 23 H 0.09 4.32 7.21 -2.91 -0.02 4.30 16 24 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 25 N -0.95 -56.38 10.44 21.65 0.23 -56.15 16 26 Si 0.97 44.54 29.55 68.60 2.03 46.56 16 27 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 29 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 30 C 0.13 3.51 5.96 85.90 0.51 4.03 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.94 7.70 -2.39 -0.02 1.92 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.88 6.10 -2.39 -0.01 1.87 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 44 H 0.07 2.29 7.62 -2.39 -0.02 2.28 16 45 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.08 2.42 8.11 -2.39 -0.02 2.40 16 47 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 48 H 0.00 0.16 7.77 -2.39 -0.02 0.14 16 49 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.09 2.51 6.99 -2.38 -0.02 2.49 16 51 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 Total: -1.00 -68.66 403.49 5.06 -63.60 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.92 Total: 14.48 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.35 Total: 6.46 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -5.01 Total: -114.95 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.78 Total: -16.15 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.66 5.06 -63.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.153 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds