Wall clock time and date at job start Wed Apr 1 2020 04:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30011 * 127.33561 * 2 1 4 4 O 1.20657 * 112.30075 * 180.27103 * 3 2 1 5 5 C 1.33490 * 113.15829 * 359.73690 * 4 3 2 6 6 C 1.50698 * 126.83071 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47283 * 300.00357 * 6 5 4 8 8 C 1.53002 * 109.46815 * 60.00194 * 6 5 4 9 9 C 1.37362 * 106.33759 * 359.97438 * 5 4 3 10 10 C 1.47404 * 128.55968 * 179.97438 * 9 5 4 11 11 O 1.21608 * 119.99616 * 89.99983 * 10 9 5 12 12 N 1.34770 * 120.00143 * 269.99919 * 10 9 5 13 13 C 1.44341 * 116.40205 * 359.97438 * 12 10 9 14 14 C 1.51586 * 113.04789 * 187.64292 * 13 12 10 15 15 C 1.52971 * 111.58266 * 320.44517 * 14 13 12 16 16 H 1.09002 * 112.11352 * 295.25552 * 15 14 13 17 17 C 1.54013 * 109.50419 * 61.13510 * 15 14 13 18 18 H 1.09003 * 109.50664 * 186.24974 * 17 15 14 19 19 C 1.54776 * 101.73938 * 71.47660 * 17 15 14 20 20 C 1.54808 * 101.71220 * 38.75351 * 19 17 15 21 21 N 1.47408 * 107.23342 * 337.50696 * 20 19 17 22 22 C 1.36936 * 125.98306 * 176.61835 * 21 20 19 23 23 H 1.07991 * 120.00434 * 175.69194 * 22 21 20 24 24 C 1.38818 * 119.99438 * 355.69455 * 22 21 20 25 25 N 1.31611 * 120.00360 * 7.39039 * 24 22 21 26 26 Si 1.86795 * 119.99385 * 187.39038 * 24 22 21 27 27 H 1.48507 * 109.47279 * 94.98922 * 26 24 22 28 28 H 1.48504 * 109.46971 * 214.98489 * 26 24 22 29 29 H 1.48504 * 109.47589 * 334.98266 * 26 24 22 30 30 C 1.43986 * 116.40196 * 180.02562 * 12 10 9 31 31 H 1.08998 * 109.47539 * 270.14510 * 1 2 3 32 32 H 1.09007 * 109.46919 * 30.14625 * 1 2 3 33 33 H 1.09001 * 109.47519 * 150.14485 * 1 2 3 34 34 H 1.08994 * 109.47187 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.46976 * 60.00062 * 7 6 5 36 36 H 1.09006 * 109.47192 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47099 * 299.99751 * 7 6 5 38 38 H 1.09001 * 109.46921 * 60.00016 * 8 6 5 39 39 H 1.09001 * 109.47076 * 179.97438 * 8 6 5 40 40 H 1.08994 * 109.47311 * 300.00008 * 8 6 5 41 41 H 1.08999 * 108.76414 * 66.72573 * 13 12 10 42 42 H 1.08999 * 108.67892 * 308.50308 * 13 12 10 43 43 H 1.08997 * 109.05870 * 199.90598 * 14 13 12 44 44 H 1.08997 * 109.00312 * 80.95085 * 14 13 12 45 45 H 1.09000 * 110.92304 * 280.70363 * 19 17 15 46 46 H 1.09007 * 111.12050 * 156.88533 * 19 17 15 47 47 H 1.08998 * 109.91446 * 218.04794 * 20 19 17 48 48 H 1.08998 * 109.91319 * 96.95394 * 20 19 17 49 49 H 0.96997 * 120.00265 * 180.02562 * 25 24 22 50 50 H 1.09001 * 108.13447 * 304.50716 * 30 12 10 51 51 H 1.09001 * 108.13641 * 61.01435 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0041 6 6 4.9711 -1.3246 -0.0101 7 6 5.7582 -0.9390 -1.2642 8 6 5.7715 -0.9349 1.2343 9 6 2.3991 -1.1696 0.0035 10 6 2.0400 -2.5992 0.0073 11 8 1.8978 -3.1876 1.0620 12 7 1.8694 -3.2542 -1.1581 13 6 2.0566 -2.4809 -2.3624 14 6 1.6692 -3.2357 -3.6186 15 6 2.0975 -4.7025 -3.5484 16 1 3.1815 -4.8123 -3.5154 17 6 1.3940 -5.3874 -2.3618 18 1 1.7816 -6.3993 -2.2436 19 6 -0.0658 -5.4743 -2.8687 20 6 0.1407 -5.8181 -4.3639 21 7 1.4980 -5.3752 -4.7304 22 6 2.1011 -5.5524 -5.9470 23 1 3.0759 -5.1269 -6.1336 24 6 1.4591 -6.2790 -6.9405 25 7 0.2153 -6.6732 -6.7681 26 14 2.3607 -6.6971 -8.5221 27 1 2.9564 -8.0528 -8.4088 28 1 1.4053 -6.6698 -9.6586 29 1 3.4372 -5.7013 -8.7565 30 6 1.5193 -4.6477 -1.0641 31 1 -0.3634 0.0026 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8913 -0.5116 34 1 4.7962 -2.4004 -0.0079 35 1 5.9331 0.1369 -1.2668 36 1 6.7144 -1.4622 -1.2682 37 1 5.1880 -1.2166 -2.1506 38 1 5.2108 -1.2097 2.1277 39 1 6.7274 -1.4588 1.2302 40 1 5.9464 0.1409 1.2316 41 1 3.1056 -2.1939 -2.4352 42 1 1.4504 -1.5775 -2.2950 43 1 2.1477 -2.7660 -4.4779 44 1 0.5874 -3.1863 -3.7429 45 1 -0.5748 -4.5171 -2.7555 46 1 -0.6123 -6.2675 -2.3582 47 1 -0.5976 -5.2939 -4.9708 48 1 0.0480 -6.8938 -4.5137 49 1 -0.2331 -7.1812 -7.4622 50 1 2.2767 -5.1478 -0.4605 51 1 0.5685 -4.7238 -0.5366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036742024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:41 Heat of formation + Delta-G solvation = 48.312849 kcal Electronic energy + Delta-G solvation = -32507.022344 eV Core-core repulsion = 28410.270566 eV Total energy + Delta-G solvation = -4096.751778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.03304 -40.53998 -38.40146 -36.33701 -35.49920 -34.73061 -32.81145 -31.73373 -31.14727 -29.61368 -28.96289 -28.47391 -27.51882 -25.51454 -24.67263 -23.16432 -23.07562 -22.76854 -20.51454 -20.14280 -19.45569 -18.00113 -17.86166 -17.58039 -16.93532 -16.57295 -16.08192 -15.91724 -15.18908 -14.82100 -14.65987 -14.39494 -13.90681 -13.86324 -13.66404 -13.54723 -13.46653 -13.39106 -13.08083 -12.95430 -12.71261 -12.53291 -11.98059 -11.78317 -11.76209 -11.62923 -11.62313 -11.54281 -11.51308 -11.10444 -11.04795 -10.84577 -10.79861 -10.26297 -10.14610 -10.06411 -10.00567 -9.90200 -9.73069 -9.65676 -9.50407 -8.64376 -8.51318 -6.92561 -5.78085 -3.10463 1.16363 1.76251 2.28942 2.65009 3.12601 3.36042 3.41464 3.43569 3.89791 3.98725 4.39112 4.45277 4.52694 4.68050 4.72262 4.94196 4.98132 5.07596 5.15390 5.17494 5.20586 5.26773 5.29883 5.30809 5.40142 5.45077 5.46508 5.50524 5.53364 5.56285 5.67296 5.75124 5.81380 5.86040 5.87581 5.90895 5.94611 5.99845 6.16383 6.20555 6.32166 6.46311 6.51304 6.71562 6.79021 6.96601 7.27618 7.48340 7.56326 7.76658 8.05229 8.07163 8.17084 9.14187 9.74436 10.42064 11.33901 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003078 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.343359 B = 9095.727196 C = 9738.850629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.053 3.947 3 N -0.356 5.356 4 O 0.099 5.901 5 C 0.023 3.977 6 C -0.016 4.016 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.239 4.239 10 C 0.585 3.415 11 O -0.528 6.528 12 N -0.575 5.575 13 C 0.118 3.882 14 C -0.139 4.139 15 C 0.169 3.831 16 H 0.065 0.935 17 C -0.109 4.109 18 H 0.085 0.915 19 C -0.140 4.140 20 C 0.176 3.824 21 N -0.600 5.600 22 C -0.230 4.230 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.138 3.862 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.051 0.949 49 H 0.252 0.748 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.154 11.637 14.221 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.063 5.063 4 O 0.037 5.963 5 C -0.040 4.040 6 C -0.035 4.035 7 C -0.208 4.208 8 C -0.206 4.206 9 C -0.246 4.246 10 C 0.371 3.629 11 O -0.405 6.405 12 N -0.307 5.307 13 C -0.006 4.006 14 C -0.180 4.180 15 C 0.061 3.939 16 H 0.083 0.917 17 C -0.129 4.129 18 H 0.103 0.897 19 C -0.178 4.178 20 C 0.052 3.948 21 N -0.324 5.324 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.739 3.261 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 C 0.016 3.984 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.803 12.456 14.449 19.940 hybrid contribution 0.149 -0.957 -1.005 1.396 sum 5.952 11.499 13.443 18.665 Atomic orbital electron populations 1.20228 0.85193 1.04226 1.03873 1.24706 0.98532 0.86495 1.01131 1.73608 0.89156 1.23319 1.20178 1.84491 1.21380 1.22506 1.67902 1.24590 0.96800 0.83656 0.98969 1.19911 0.87002 0.98666 0.97968 1.21909 1.00281 1.02595 0.95988 1.21875 1.00044 1.02490 0.96179 1.21894 0.92776 0.95369 1.14576 1.17050 0.77697 0.84136 0.84052 1.90803 1.50581 1.68069 1.31073 1.46651 1.67546 1.10527 1.05944 1.20901 1.00478 0.93925 0.85256 1.22148 1.02788 0.98475 0.94565 1.21027 0.96010 0.89859 0.87008 0.91733 1.21690 0.98521 0.99687 0.92980 0.89660 1.23031 0.94559 1.00420 0.99796 1.21273 0.86576 0.99271 0.87692 1.44962 1.12825 1.66468 1.08162 1.19034 1.00516 1.27976 0.88248 0.90434 1.24796 0.96350 1.00501 0.98528 1.69964 1.10159 1.42405 1.34016 0.86157 0.78629 0.78400 0.82924 1.21629 1.21811 1.20647 1.20097 1.00874 0.79413 0.98036 0.89645 0.89844 0.89800 0.87977 0.91567 0.90866 0.91687 0.91930 0.90955 0.91618 0.92608 0.92287 0.90617 0.91265 0.92510 0.91968 0.94459 0.93064 0.93733 0.91869 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.49 36.00 0.38 -0.39 16 2 C 0.05 0.67 7.34 -79.77 -0.59 0.09 16 3 N -0.36 -4.64 12.01 34.78 0.42 -4.23 16 4 O 0.10 1.19 11.06 18.66 0.21 1.40 16 5 C 0.02 0.27 6.06 -34.63 -0.21 0.06 16 6 C -0.02 -0.14 3.33 -91.77 -0.31 -0.45 16 7 C -0.15 -1.14 9.18 37.16 0.34 -0.80 16 8 C -0.15 -1.10 9.18 37.16 0.34 -0.76 16 9 C -0.24 -3.11 4.40 -102.89 -0.45 -3.57 16 10 C 0.59 8.53 7.02 -12.53 -0.09 8.44 16 11 O -0.53 -9.17 16.75 5.27 0.09 -9.08 16 12 N -0.58 -8.05 3.20 -181.36 -0.58 -8.63 16 13 C 0.12 1.58 5.24 -5.91 -0.03 1.55 16 14 C -0.14 -2.27 5.23 -27.46 -0.14 -2.41 16 15 C 0.17 3.11 3.67 -66.24 -0.24 2.87 16 16 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.11 -1.78 2.88 -90.70 -0.26 -2.04 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 19 C -0.14 -2.44 5.72 -24.84 -0.14 -2.58 16 20 C 0.18 4.03 5.11 -2.59 -0.01 4.01 16 21 N -0.60 -14.10 2.92 -161.63 -0.47 -14.57 16 22 C -0.23 -6.03 10.30 -15.06 -0.16 -6.19 16 23 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 24 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 25 N -0.92 -26.10 10.41 55.49 0.58 -25.52 16 26 Si 0.91 21.41 29.56 -169.99 -5.02 16.39 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 C 0.14 2.01 5.11 -6.92 -0.04 1.98 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.99 7.70 -51.93 -0.40 0.59 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.54 7.83 -51.93 -0.41 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.69 7.79 -51.93 -0.40 0.29 16 42 H 0.06 0.76 7.28 -51.93 -0.38 0.38 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.22 6.45 -51.93 -0.33 0.88 16 45 H 0.06 0.95 7.18 -51.93 -0.37 0.58 16 46 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 47 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 48 H 0.05 1.32 7.24 -51.93 -0.38 0.94 16 49 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 51 H 0.06 0.93 7.79 -51.93 -0.40 0.52 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -30.72 401.76 -8.94 -39.66 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.51 Total: -1.04 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.70 Total: -0.43 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.06 Total: -52.95 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.29 Total: -7.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.72 -8.94 -39.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.974 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds