Wall clock time and date at job start Wed Apr 1 2020 04:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30014 * 127.33373 * 2 1 4 4 O 1.20658 * 112.29967 * 179.97438 * 3 2 1 5 5 C 1.33487 * 113.16029 * 359.71195 * 4 3 2 6 6 C 1.50700 * 126.83273 * 180.30817 * 5 4 3 7 7 C 1.53001 * 109.47248 * 300.17373 * 6 5 4 8 8 C 1.53000 * 109.47042 * 60.17290 * 6 5 4 9 9 C 1.37363 * 106.33860 * 0.45400 * 5 4 3 10 10 C 1.47396 * 128.56160 * 179.85321 * 9 5 4 11 11 O 1.21615 * 120.00324 * 269.69740 * 10 9 5 12 12 N 1.34780 * 119.99817 * 89.70686 * 10 9 5 13 13 C 1.46594 * 119.68762 * 359.97021 * 12 10 9 14 14 C 1.53954 * 110.57503 * 132.17554 * 13 12 10 15 15 C 1.51537 * 107.34191 * 51.05301 * 14 13 12 16 16 H 1.08996 * 109.26057 * 53.70932 * 15 14 13 17 17 C 1.55369 * 107.80801 * 295.15721 * 15 14 13 18 18 H 1.08997 * 111.50812 * 309.57991 * 17 15 14 19 19 C 1.53743 * 100.22042 * 190.89566 * 17 15 14 20 20 C 1.55285 * 101.83970 * 39.09462 * 19 17 15 21 21 N 1.45468 * 117.36178 * 178.09301 * 15 14 13 22 22 C 1.36939 * 126.40341 * 329.38281 * 21 15 14 23 23 H 1.07995 * 119.99993 * 359.97438 * 22 21 15 24 24 C 1.38815 * 119.99949 * 180.02562 * 22 21 15 25 25 N 1.31614 * 119.99723 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99710 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46926 * 59.99800 * 26 24 22 28 28 H 1.48501 * 109.46662 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47056 * 299.99572 * 26 24 22 30 30 C 1.47719 * 119.68052 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47201 * 270.04428 * 1 2 3 32 32 H 1.09001 * 109.47070 * 30.05049 * 1 2 3 33 33 H 1.09008 * 109.46964 * 150.04894 * 1 2 3 34 34 H 1.09000 * 109.47484 * 180.17189 * 6 5 4 35 35 H 1.08991 * 109.47031 * 59.99807 * 7 6 5 36 36 H 1.09001 * 109.46674 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47078 * 299.99619 * 7 6 5 38 38 H 1.09001 * 109.47143 * 59.99961 * 8 6 5 39 39 H 1.08994 * 109.47315 * 179.97438 * 8 6 5 40 40 H 1.09000 * 109.46899 * 300.00258 * 8 6 5 41 41 H 1.08999 * 109.25811 * 252.46326 * 13 12 10 42 42 H 1.09009 * 109.25088 * 11.93111 * 13 12 10 43 43 H 1.09003 * 109.87965 * 170.51793 * 14 13 12 44 44 H 1.08996 * 109.88041 * 291.59498 * 14 13 12 45 45 H 1.08997 * 110.94949 * 157.23163 * 19 17 15 46 46 H 1.08993 * 110.95600 * 280.95439 * 19 17 15 47 47 H 1.09001 * 109.92252 * 218.16738 * 20 19 17 48 48 H 1.08998 * 110.08821 * 96.96333 * 20 19 17 49 49 H 0.97003 * 119.99753 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.07439 * 112.84600 * 30 12 10 51 51 H 1.08997 * 110.16510 * 351.31626 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0071 6 6 4.9712 -1.3245 0.0160 7 6 5.7722 -0.9390 -1.2292 8 6 5.7576 -0.9347 1.2692 9 6 2.3991 -1.1696 0.0008 10 6 2.0402 -2.5992 0.0011 11 8 1.8928 -3.1894 -1.0520 12 7 1.8750 -3.2522 1.1684 13 6 2.0548 -2.5342 2.4338 14 6 0.8811 -2.8186 3.3887 15 6 0.7141 -4.3228 3.4637 16 1 1.6669 -4.7773 3.7350 17 6 0.2915 -4.8248 2.0554 18 1 -0.5506 -4.2543 1.6638 19 6 -0.0999 -6.2738 2.3884 20 6 -0.8093 -6.1052 3.7594 21 7 -0.3190 -4.8375 4.3490 22 6 -0.7564 -4.2587 5.5105 23 1 -0.3235 -3.3281 5.8463 24 6 -1.7554 -4.8688 6.2566 25 7 -2.2826 -6.0032 5.8475 26 14 -2.3515 -4.0795 7.8413 27 1 -2.8965 -2.7297 7.5475 28 1 -3.4154 -4.9221 8.4441 29 1 -1.2168 -3.9591 8.7916 30 6 1.5148 -4.6848 1.1605 31 1 -0.3633 0.0008 1.0276 32 1 -0.3633 0.8895 -0.5146 33 1 -0.3633 -0.8905 -0.5131 34 1 4.7963 -2.4004 0.0169 35 1 5.9471 0.1368 -1.2300 36 1 6.7280 -1.4629 -1.2229 37 1 5.2120 -1.2167 -2.1220 38 1 5.1869 -1.2093 2.1564 39 1 6.7134 -1.4585 1.2760 40 1 5.9325 0.1412 1.2684 41 1 2.9850 -2.8570 2.9013 42 1 2.1049 -1.4635 2.2355 43 1 1.1038 -2.4204 4.3786 44 1 -0.0304 -2.3633 3.0015 45 1 -0.7855 -6.6738 1.6413 46 1 0.7839 -6.9047 2.4817 47 1 -0.5578 -6.9404 4.4130 48 1 -1.8891 -6.0562 3.6187 49 1 -2.9810 -6.4293 6.3687 50 1 2.3377 -5.2797 1.5567 51 1 1.2753 -5.0064 0.1470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036742026.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:48 Heat of formation + Delta-G solvation = 45.342761 kcal Electronic energy + Delta-G solvation = -32433.287356 eV Core-core repulsion = 28336.406785 eV Total energy + Delta-G solvation = -4096.880570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.03753 -40.26033 -38.31199 -36.36026 -35.44651 -34.69715 -32.74588 -31.64414 -31.22121 -29.63930 -28.90497 -28.19656 -27.56270 -25.44064 -24.57008 -23.18517 -22.94351 -22.44477 -20.36178 -20.07490 -19.55883 -19.09112 -17.95446 -17.52328 -16.68388 -16.23667 -15.99997 -15.82663 -15.07613 -14.79587 -14.50965 -14.32783 -13.94284 -13.84243 -13.69251 -13.44731 -13.42114 -13.15705 -13.01791 -12.97790 -12.63335 -12.58272 -12.48246 -11.81176 -11.73360 -11.67160 -11.66254 -11.53406 -11.47612 -11.11007 -10.88936 -10.83599 -10.78038 -10.34495 -10.20034 -10.03786 -9.98934 -9.88377 -9.68360 -9.59261 -9.42843 -8.65879 -8.64028 -6.88054 -5.75333 -3.08769 1.14848 1.77451 2.31538 2.63970 3.05056 3.37097 3.41698 3.42990 3.90727 3.98049 4.40783 4.45514 4.51141 4.63828 4.69598 4.92199 4.96024 5.03474 5.15597 5.20238 5.24934 5.27160 5.35471 5.40865 5.42125 5.46830 5.48591 5.49619 5.51950 5.55398 5.63679 5.74185 5.81989 5.83921 5.84833 5.89949 5.95550 6.07835 6.11932 6.16781 6.28105 6.41541 6.55413 6.58001 6.75512 7.00314 7.31585 7.51062 7.57197 7.77269 8.03773 8.07796 8.20580 9.15395 9.78970 10.46715 11.37028 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.003067 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.168484 B = 9127.825486 C = 9613.194074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.356 5.356 4 O 0.099 5.901 5 C 0.020 3.980 6 C -0.015 4.015 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.239 4.239 10 C 0.596 3.404 11 O -0.533 6.533 12 N -0.593 5.593 13 C 0.113 3.887 14 C -0.128 4.128 15 C 0.168 3.832 16 H 0.020 0.980 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.135 4.135 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.126 3.874 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.038 0.962 48 H 0.055 0.945 49 H 0.253 0.747 50 H 0.072 0.928 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.207 8.709 -12.010 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.063 5.063 4 O 0.037 5.963 5 C -0.044 4.044 6 C -0.035 4.035 7 C -0.206 4.206 8 C -0.207 4.207 9 C -0.246 4.246 10 C 0.381 3.619 11 O -0.410 6.410 12 N -0.325 5.325 13 C -0.010 4.010 14 C -0.167 4.167 15 C 0.059 3.941 16 H 0.037 0.963 17 C -0.145 4.145 18 H 0.099 0.901 19 C -0.174 4.174 20 C 0.053 3.947 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C 0.005 3.995 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.765 9.639 -12.344 20.851 hybrid contribution -0.595 -0.333 0.998 1.209 sum 13.169 9.306 -11.345 19.717 Atomic orbital electron populations 1.20254 0.85056 1.04235 1.04169 1.24750 0.98619 0.86407 1.00816 1.73622 0.89118 1.23292 1.20256 1.84494 1.21435 1.22456 1.67912 1.24588 0.96768 0.83752 0.99297 1.19893 0.87015 0.98623 0.97923 1.21876 0.99996 1.02527 0.96219 1.21896 1.00184 1.02633 0.95993 1.21913 0.92760 0.95483 1.14413 1.16985 0.77052 0.83907 0.83908 1.90801 1.51239 1.67898 1.31053 1.48259 1.67545 1.11188 1.05497 1.21783 0.99277 0.96108 0.83811 1.21882 0.97232 0.98974 0.98627 1.20643 0.92759 0.91637 0.89014 0.96251 1.22636 0.96684 0.98494 0.96637 0.90147 1.22697 1.00280 0.94382 0.99992 1.21532 0.97171 0.88090 0.87938 1.44202 1.41707 1.23107 1.22895 1.18932 1.15636 1.04340 0.96671 0.90476 1.24786 0.99070 0.97333 0.99116 1.69923 1.29646 1.17944 1.39305 0.86242 0.78255 0.78294 0.83226 1.21199 1.21605 1.21181 1.21695 0.97134 0.78942 1.01765 0.89301 0.89945 0.89704 0.88039 0.91601 0.90999 0.91894 0.91805 0.90948 0.91536 0.91475 0.90737 0.90451 0.91357 0.91984 0.92251 0.94367 0.92668 0.93671 0.90972 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.49 36.00 0.38 -0.50 16 2 C 0.06 0.73 7.45 -79.77 -0.59 0.14 16 3 N -0.36 -4.74 12.01 34.78 0.42 -4.32 16 4 O 0.10 1.19 11.06 18.67 0.21 1.39 16 5 C 0.02 0.22 6.06 -34.63 -0.21 0.01 16 6 C -0.02 -0.13 3.33 -91.77 -0.31 -0.43 16 7 C -0.15 -1.05 9.18 37.16 0.34 -0.70 16 8 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 9 C -0.24 -3.14 4.15 -102.89 -0.43 -3.56 16 10 C 0.60 8.76 7.16 -12.53 -0.09 8.67 16 11 O -0.53 -9.36 16.47 5.26 0.09 -9.28 16 12 N -0.59 -8.24 3.00 -173.79 -0.52 -8.76 16 13 C 0.11 1.48 6.23 -3.49 -0.02 1.45 16 14 C -0.13 -2.08 5.48 -26.97 -0.15 -2.22 16 15 C 0.17 3.18 2.55 -67.97 -0.17 3.01 16 16 H 0.02 0.39 7.94 -51.93 -0.41 -0.02 16 17 C -0.12 -2.10 2.86 -89.38 -0.26 -2.35 16 18 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 19 C -0.13 -2.39 6.54 -25.13 -0.16 -2.55 16 20 C 0.18 4.12 5.46 -1.92 -0.01 4.11 16 21 N -0.59 -14.33 3.35 -163.09 -0.55 -14.87 16 22 C -0.23 -6.03 9.88 -15.06 -0.15 -6.18 16 23 H 0.08 1.95 7.21 -52.49 -0.38 1.58 16 24 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 25 N -0.92 -26.43 10.43 55.49 0.58 -25.85 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.13 1.81 5.95 -3.78 -0.02 1.79 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.10 0.91 7.70 -51.93 -0.40 0.51 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.92 6.16 -51.92 -0.32 0.60 16 43 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 44 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 47 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 48 H 0.06 1.44 7.20 -51.93 -0.37 1.07 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 51 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -31.40 403.53 -8.84 -40.24 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.52 Total: -0.91 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.61 Total: -0.27 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.07 Total: -53.81 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.29 Total: -7.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.40 -8.84 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742026.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.585 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds