Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30014 * 127.33373 * 2 1 4 4 O 1.20658 * 112.29967 * 179.97438 * 3 2 1 5 5 C 1.33487 * 113.16029 * 359.71195 * 4 3 2 6 6 C 1.50700 * 126.83273 * 180.30817 * 5 4 3 7 7 C 1.53001 * 109.47248 * 300.17373 * 6 5 4 8 8 C 1.53000 * 109.47042 * 60.17290 * 6 5 4 9 9 C 1.37363 * 106.33860 * 0.45400 * 5 4 3 10 10 C 1.47396 * 128.56160 * 179.85321 * 9 5 4 11 11 O 1.21615 * 120.00324 * 269.69740 * 10 9 5 12 12 N 1.34780 * 119.99817 * 89.70686 * 10 9 5 13 13 C 1.46594 * 119.68762 * 359.97021 * 12 10 9 14 14 C 1.53954 * 110.57503 * 132.17554 * 13 12 10 15 15 C 1.51537 * 107.34191 * 51.05301 * 14 13 12 16 16 H 1.08996 * 109.26057 * 53.70932 * 15 14 13 17 17 C 1.55369 * 107.80801 * 295.15721 * 15 14 13 18 18 H 1.08997 * 111.50812 * 309.57991 * 17 15 14 19 19 C 1.53743 * 100.22042 * 190.89566 * 17 15 14 20 20 C 1.55285 * 101.83970 * 39.09462 * 19 17 15 21 21 N 1.45468 * 117.36178 * 178.09301 * 15 14 13 22 22 C 1.36939 * 126.40341 * 329.38281 * 21 15 14 23 23 H 1.07995 * 119.99993 * 359.97438 * 22 21 15 24 24 C 1.38815 * 119.99949 * 180.02562 * 22 21 15 25 25 N 1.31614 * 119.99723 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99710 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46926 * 59.99800 * 26 24 22 28 28 H 1.48501 * 109.46662 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47056 * 299.99572 * 26 24 22 30 30 C 1.47719 * 119.68052 * 179.97438 * 12 10 9 31 31 H 1.08995 * 109.47201 * 270.04428 * 1 2 3 32 32 H 1.09001 * 109.47070 * 30.05049 * 1 2 3 33 33 H 1.09008 * 109.46964 * 150.04894 * 1 2 3 34 34 H 1.09000 * 109.47484 * 180.17189 * 6 5 4 35 35 H 1.08991 * 109.47031 * 59.99807 * 7 6 5 36 36 H 1.09001 * 109.46674 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47078 * 299.99619 * 7 6 5 38 38 H 1.09001 * 109.47143 * 59.99961 * 8 6 5 39 39 H 1.08994 * 109.47315 * 179.97438 * 8 6 5 40 40 H 1.09000 * 109.46899 * 300.00258 * 8 6 5 41 41 H 1.08999 * 109.25811 * 252.46326 * 13 12 10 42 42 H 1.09009 * 109.25088 * 11.93111 * 13 12 10 43 43 H 1.09003 * 109.87965 * 170.51793 * 14 13 12 44 44 H 1.08996 * 109.88041 * 291.59498 * 14 13 12 45 45 H 1.08997 * 110.94949 * 157.23163 * 19 17 15 46 46 H 1.08993 * 110.95600 * 280.95439 * 19 17 15 47 47 H 1.09001 * 109.92252 * 218.16738 * 20 19 17 48 48 H 1.08998 * 110.08821 * 96.96333 * 20 19 17 49 49 H 0.97003 * 119.99753 * 180.02562 * 25 24 22 50 50 H 1.09000 * 110.07439 * 112.84600 * 30 12 10 51 51 H 1.08997 * 110.16510 * 351.31626 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0071 6 6 4.9712 -1.3245 0.0160 7 6 5.7722 -0.9390 -1.2292 8 6 5.7576 -0.9347 1.2692 9 6 2.3991 -1.1696 0.0008 10 6 2.0402 -2.5992 0.0011 11 8 1.8928 -3.1894 -1.0520 12 7 1.8750 -3.2522 1.1684 13 6 2.0548 -2.5342 2.4338 14 6 0.8811 -2.8186 3.3887 15 6 0.7141 -4.3228 3.4637 16 1 1.6669 -4.7773 3.7350 17 6 0.2915 -4.8248 2.0554 18 1 -0.5506 -4.2543 1.6638 19 6 -0.0999 -6.2738 2.3884 20 6 -0.8093 -6.1052 3.7594 21 7 -0.3190 -4.8375 4.3490 22 6 -0.7564 -4.2587 5.5105 23 1 -0.3235 -3.3281 5.8463 24 6 -1.7554 -4.8688 6.2566 25 7 -2.2826 -6.0032 5.8475 26 14 -2.3515 -4.0795 7.8413 27 1 -2.8965 -2.7297 7.5475 28 1 -3.4154 -4.9221 8.4441 29 1 -1.2168 -3.9591 8.7916 30 6 1.5148 -4.6848 1.1605 31 1 -0.3633 0.0008 1.0276 32 1 -0.3633 0.8895 -0.5146 33 1 -0.3633 -0.8905 -0.5131 34 1 4.7963 -2.4004 0.0169 35 1 5.9471 0.1368 -1.2300 36 1 6.7280 -1.4629 -1.2229 37 1 5.2120 -1.2167 -2.1220 38 1 5.1869 -1.2093 2.1564 39 1 6.7134 -1.4585 1.2760 40 1 5.9325 0.1412 1.2684 41 1 2.9850 -2.8570 2.9013 42 1 2.1049 -1.4635 2.2355 43 1 1.1038 -2.4204 4.3786 44 1 -0.0304 -2.3633 3.0015 45 1 -0.7855 -6.6738 1.6413 46 1 0.7839 -6.9047 2.4817 47 1 -0.5578 -6.9404 4.4130 48 1 -1.8891 -6.0562 3.6187 49 1 -2.9810 -6.4293 6.3687 50 1 2.3377 -5.2797 1.5567 51 1 1.2753 -5.0064 0.1470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036742026.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = 28.309789 kcal Electronic energy + Delta-G solvation = -32434.025961 eV Core-core repulsion = 28336.406785 eV Total energy + Delta-G solvation = -4097.619175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.99765 -41.51800 -39.73647 -37.05267 -36.86097 -35.68501 -34.50578 -33.07906 -32.22334 -31.20763 -29.90458 -29.63498 -28.07548 -26.86257 -26.14832 -24.21015 -23.91681 -23.81460 -21.89888 -21.46098 -20.74598 -20.13508 -19.02595 -18.71435 -18.13677 -17.52791 -17.06060 -16.89407 -16.72735 -16.00910 -15.87120 -15.61914 -15.29946 -14.95807 -14.74535 -14.44510 -14.37026 -14.26906 -14.12419 -14.06221 -13.87836 -13.82058 -13.33261 -13.17330 -13.09217 -13.04436 -12.65596 -12.57409 -12.51838 -12.34219 -12.24143 -12.16122 -12.04723 -11.84346 -11.81300 -11.61008 -11.52977 -11.31148 -11.05155 -10.90076 -10.68589 -10.43513 -9.83210 -8.85777 -7.82178 -5.16241 0.24170 0.78978 1.19050 1.46671 1.48898 1.54907 1.66633 2.02784 2.51275 2.96694 3.11650 3.36411 3.39365 3.52492 3.73495 3.78437 3.84946 3.97367 4.00290 4.06189 4.13193 4.17055 4.21900 4.36789 4.39909 4.47422 4.50512 4.56151 4.64391 4.65598 4.69908 4.75728 4.79557 4.80067 4.88212 4.90027 4.93661 5.00010 5.03933 5.08948 5.09426 5.19458 5.30671 5.35485 5.40663 5.52542 5.54231 5.68075 5.79206 6.17399 6.22503 6.89508 7.10996 7.14492 7.81408 8.49640 9.29355 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.003067 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.168484 B = 9127.825486 C = 9613.194074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.049 3.951 3 N -0.372 5.372 4 O 0.100 5.900 5 C 0.039 3.961 6 C -0.017 4.017 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.265 4.265 10 C 0.604 3.396 11 O -0.564 6.564 12 N -0.590 5.590 13 C 0.125 3.875 14 C -0.121 4.121 15 C 0.159 3.841 16 H 0.027 0.973 17 C -0.109 4.109 18 H 0.063 0.937 19 C -0.119 4.119 20 C 0.182 3.818 21 N -0.616 5.616 22 C -0.229 4.229 23 H 0.086 0.914 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.972 3.028 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.276 1.276 30 C 0.134 3.866 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.004 0.996 48 H 0.016 0.984 49 H 0.244 0.756 50 H 0.094 0.906 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.802 9.962 -12.483 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 N -0.079 5.079 4 O 0.040 5.960 5 C -0.025 4.025 6 C -0.036 4.036 7 C -0.204 4.204 8 C -0.204 4.204 9 C -0.272 4.272 10 C 0.391 3.609 11 O -0.443 6.443 12 N -0.321 5.321 13 C 0.002 3.998 14 C -0.160 4.160 15 C 0.052 3.948 16 H 0.044 0.956 17 C -0.130 4.130 18 H 0.081 0.919 19 C -0.158 4.158 20 C 0.057 3.943 21 N -0.340 5.340 22 C -0.358 4.358 23 H 0.104 0.896 24 C -0.261 4.261 25 N -0.603 5.603 26 Si 0.801 3.199 27 H -0.204 1.204 28 H -0.226 1.226 29 H -0.202 1.202 30 C 0.013 3.987 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.022 0.978 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.112 0.888 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.401 10.929 -12.824 23.513 hybrid contribution -1.356 -0.707 1.119 1.895 sum 15.044 10.222 -11.705 21.630 Atomic orbital electron populations 1.20305 0.84209 1.04602 1.04572 1.25033 0.99362 0.86352 1.00507 1.73616 0.89528 1.23616 1.21138 1.84481 1.21021 1.22823 1.67713 1.25126 0.97383 0.83290 0.96685 1.20102 0.85948 0.98038 0.99529 1.21886 1.00536 1.03154 0.94823 1.21906 1.00699 1.03138 0.94649 1.21813 0.93724 0.94725 1.16956 1.17063 0.76206 0.84266 0.83403 1.90785 1.52693 1.68736 1.32121 1.48252 1.67124 1.11037 1.05710 1.21741 0.98567 0.96825 0.82671 1.21787 0.98106 0.96679 0.99440 1.20877 0.91413 0.93521 0.88990 0.95552 1.22463 0.97322 0.97272 0.95914 0.91883 1.22564 1.00902 0.95565 0.96781 1.21301 0.95599 0.87062 0.90332 1.44485 1.42700 1.23616 1.23210 1.19347 1.14903 1.04289 0.97295 0.89581 1.25588 0.99992 0.98146 1.02403 1.70151 1.30288 1.19465 1.40369 0.85247 0.77545 0.77357 0.79795 1.20442 1.22552 1.20229 1.21613 0.96369 0.79590 1.01136 0.88825 0.88620 0.90295 0.88297 0.91119 0.88828 0.93222 0.92160 0.88974 0.91211 0.89087 0.89614 0.90647 0.92793 0.90397 0.89969 0.97762 0.96597 0.94634 0.88796 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.49 71.23 0.75 -0.94 16 2 C 0.05 1.22 7.45 45.15 0.34 1.56 16 3 N -0.37 -9.36 12.01 -44.79 -0.54 -9.90 16 4 O 0.10 2.23 11.06 77.04 0.85 3.08 16 5 C 0.04 0.80 6.06 25.48 0.15 0.95 16 6 C -0.02 -0.23 3.33 -11.54 -0.04 -0.27 16 7 C -0.15 -1.67 9.18 71.98 0.66 -1.01 16 8 C -0.15 -1.48 9.18 71.98 0.66 -0.82 16 9 C -0.26 -6.54 4.15 -18.74 -0.08 -6.61 16 10 C 0.60 16.73 7.16 86.65 0.62 17.35 16 11 O -0.56 -19.14 16.47 -4.08 -0.07 -19.21 16 12 N -0.59 -15.06 3.00 -821.99 -2.47 -17.53 16 13 C 0.12 2.91 6.23 86.68 0.54 3.45 16 14 C -0.12 -3.75 5.48 30.44 0.17 -3.58 16 15 C 0.16 5.85 2.55 45.52 0.12 5.96 16 16 H 0.03 0.98 7.94 -2.39 -0.02 0.96 16 17 C -0.11 -3.56 2.86 -9.99 -0.03 -3.59 16 18 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 19 C -0.12 -4.13 6.54 31.63 0.21 -3.92 16 20 C 0.18 8.74 5.46 86.85 0.47 9.21 16 21 N -0.62 -30.00 3.35 -669.90 -2.24 -32.24 16 22 C -0.23 -12.27 9.88 84.03 0.83 -11.44 16 23 H 0.09 4.33 7.21 -2.91 -0.02 4.31 16 24 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 25 N -0.95 -56.90 10.43 21.65 0.23 -56.68 16 26 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 30 C 0.13 3.53 5.95 85.88 0.51 4.04 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.10 1.49 7.70 -2.39 -0.02 1.47 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.09 1.88 6.16 -2.38 -0.01 1.87 16 43 H 0.07 2.37 7.62 -2.39 -0.02 2.35 16 44 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.08 2.49 8.11 -2.39 -0.02 2.47 16 47 H 0.00 0.22 7.77 -2.39 -0.02 0.20 16 48 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 49 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 51 H 0.09 2.51 7.00 -2.39 -0.02 2.49 16 Total: -1.00 -70.08 403.53 5.05 -65.03 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.92 Total: 13.40 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.35 Total: 6.98 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -5.02 Total: -116.34 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.78 Total: -16.13 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.08 5.05 -65.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742026.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.341 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds