Wall clock time and date at job start Wed Apr 1 2020 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.78135 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47244 * 89.99492 * 8 7 5 10 10 C 1.50701 * 109.47244 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99817 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99560 * 180.02562 * 10 9 8 13 13 C 1.47142 * 121.01647 * 0.02562 * 12 10 9 14 14 C 1.53042 * 107.68524 * 122.56267 * 13 12 10 15 15 C 1.51136 * 111.11905 * 54.39440 * 14 13 12 16 16 H 1.08994 * 108.46039 * 185.38939 * 15 14 13 17 17 C 1.53991 * 113.17550 * 304.88874 * 15 14 13 18 18 H 1.08996 * 112.71618 * 284.02807 * 17 15 14 19 19 C 1.56017 * 100.39067 * 163.65720 * 17 15 14 20 20 C 1.54500 * 102.62353 * 323.14254 * 19 17 15 21 21 N 1.46473 * 113.22907 * 65.10583 * 15 14 13 22 22 C 1.36934 * 126.05506 * 29.48086 * 21 15 14 23 23 H 1.08004 * 120.00355 * 359.97438 * 22 21 15 24 24 C 1.38817 * 120.00115 * 179.97438 * 22 21 15 25 25 N 1.31617 * 119.99660 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99964 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47173 * 90.00187 * 26 24 22 28 28 H 1.48497 * 109.46864 * 209.99683 * 26 24 22 29 29 H 1.48498 * 109.47308 * 330.00135 * 26 24 22 30 30 C 1.46529 * 121.00634 * 179.72533 * 12 10 9 31 31 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 32 32 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 33 33 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 34 34 H 1.09002 * 109.47010 * 359.97322 * 6 5 4 35 35 H 1.08996 * 109.47599 * 119.97086 * 6 5 4 36 36 H 1.08996 * 109.47212 * 239.97649 * 6 5 4 37 37 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 38 38 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 39 39 H 1.08997 * 109.47239 * 300.00611 * 9 8 7 40 40 H 1.09008 * 109.46959 * 60.00439 * 9 8 7 41 41 H 1.09003 * 109.81264 * 242.10370 * 13 12 10 42 42 H 1.08993 * 109.81870 * 3.00680 * 13 12 10 43 43 H 1.09005 * 109.15045 * 174.82217 * 14 13 12 44 44 H 1.09005 * 109.14676 * 294.02980 * 14 13 12 45 45 H 1.09002 * 110.77776 * 204.86233 * 19 17 15 46 46 H 1.08994 * 110.93956 * 81.50085 * 19 17 15 47 47 H 1.09001 * 109.90218 * 263.44958 * 20 19 17 48 48 H 1.09002 * 110.05077 * 142.29073 * 20 19 17 49 49 H 0.97000 * 119.99384 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.35108 * 355.82936 * 30 12 10 51 51 H 1.09001 * 109.34498 * 115.38247 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0014 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 6 1.8252 -3.0782 1.4432 10 6 1.4296 -4.5324 1.4436 11 8 1.2709 -5.1178 0.3934 12 7 1.2523 -5.1821 2.6110 13 6 1.4384 -4.4934 3.8979 14 6 0.1311 -4.6160 4.6842 15 6 -0.2930 -6.0609 4.8137 16 1 -1.2712 -6.0918 5.2934 17 6 -0.4121 -6.7814 3.4580 18 1 -1.3140 -6.5045 2.9120 19 6 -0.4204 -8.2686 3.9295 20 6 0.5731 -8.2533 5.1126 21 7 0.6362 -6.8666 5.6093 22 6 1.4242 -6.4122 6.6329 23 1 1.3932 -5.3707 6.9170 24 6 2.2628 -7.2904 7.3056 25 7 2.3009 -8.5596 6.9592 26 14 3.3382 -6.6704 8.7015 27 1 2.5990 -6.7850 9.9844 28 1 4.5781 -7.4848 8.7703 29 1 3.6925 -5.2487 8.4596 30 6 0.8619 -6.5942 2.6372 31 1 -0.3633 -0.0003 -1.0277 32 1 -0.3633 -0.8898 0.5141 33 1 -0.3633 0.8902 0.5134 34 1 5.7357 -0.6672 0.0018 35 1 4.9549 -1.9964 0.8915 36 1 4.9560 -1.9967 -0.8884 37 1 1.0051 -2.7040 -0.5133 38 1 2.7228 -3.1704 -0.5129 39 1 2.7792 -2.9606 1.9572 40 1 1.0614 -2.4942 1.9568 41 1 2.2496 -4.9630 4.4543 42 1 1.6683 -3.4422 3.7247 43 1 0.2714 -4.1939 5.6793 44 1 -0.6507 -4.0597 4.1669 45 1 -0.0672 -8.9276 3.1364 46 1 -1.4145 -8.5659 4.2631 47 1 1.5590 -8.5711 4.7733 48 1 0.2219 -8.9153 5.9041 49 1 2.8867 -9.1732 7.4295 50 1 0.6869 -6.9395 1.6183 51 1 1.6642 -7.1824 3.0827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036891230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:00 Heat of formation + Delta-G solvation = 40.121911 kcal Electronic energy + Delta-G solvation = -31732.094108 eV Core-core repulsion = 27634.987144 eV Total energy + Delta-G solvation = -4097.106963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.09538 -40.18313 -38.39292 -36.03133 -35.01490 -33.98473 -32.90695 -31.89058 -31.64618 -29.39331 -28.89049 -28.17088 -27.53058 -25.80565 -24.76833 -23.52831 -22.56506 -21.51140 -20.31195 -20.08579 -19.47770 -18.20824 -17.79599 -17.30113 -16.73359 -16.36501 -15.71791 -15.66564 -15.12359 -14.60422 -14.52925 -14.12282 -13.96369 -13.74568 -13.69909 -13.46890 -13.37995 -13.10026 -12.96564 -12.79678 -12.68286 -12.59767 -12.38697 -12.14548 -12.04777 -11.57812 -11.51565 -11.42041 -11.13196 -11.06738 -10.92026 -10.83044 -10.69153 -10.20554 -10.08451 -10.00558 -9.95306 -9.67809 -9.66064 -9.55007 -9.24910 -8.65126 -8.21416 -6.86951 -5.76954 -3.09817 1.26405 1.99011 2.81804 2.91325 3.30442 3.34615 3.39565 3.42243 3.98380 4.24418 4.43448 4.52160 4.63145 4.85489 4.96487 5.00881 5.12005 5.12579 5.14421 5.22618 5.25036 5.30658 5.33424 5.38183 5.48541 5.50354 5.53007 5.55498 5.58171 5.70159 5.74095 5.81882 5.85804 5.89649 6.00428 6.06789 6.10436 6.23777 6.27897 6.32344 6.40446 6.51281 6.67276 6.73668 6.85934 6.91612 7.51343 7.57131 7.75016 7.77271 8.10262 8.19655 8.38787 9.15386 9.77695 10.45422 11.35062 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.002810 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.082573 B = 9963.203509 C =10959.848089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.029 4.029 6 C -0.075 4.075 7 C -0.198 4.198 8 C -0.023 4.023 9 C -0.134 4.134 10 C 0.513 3.487 11 O -0.556 6.556 12 N -0.599 5.599 13 C 0.112 3.888 14 C -0.128 4.128 15 C 0.171 3.829 16 H 0.017 0.983 17 C -0.116 4.116 18 H 0.076 0.924 19 C -0.142 4.142 20 C 0.176 3.824 21 N -0.594 5.594 22 C -0.226 4.226 23 H 0.079 0.921 24 C -0.006 4.006 25 N -0.919 5.919 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.126 3.874 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.042 0.958 49 H 0.252 0.748 50 H 0.078 0.922 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 12.393 -13.185 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.093 4.093 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.061 4.061 9 C -0.174 4.174 10 C 0.301 3.699 11 O -0.435 6.435 12 N -0.330 5.330 13 C -0.010 4.010 14 C -0.168 4.168 15 C 0.063 3.937 16 H 0.034 0.966 17 C -0.137 4.137 18 H 0.094 0.906 19 C -0.181 4.181 20 C 0.052 3.948 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C 0.004 3.996 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.709 13.305 -13.560 19.011 hybrid contribution 0.436 -0.504 1.062 1.254 sum -0.273 12.801 -12.498 17.892 Atomic orbital electron populations 1.20187 0.85992 1.03874 1.03419 1.23476 0.98931 0.88506 1.02586 1.73832 0.89319 1.24004 1.20450 1.84795 1.21636 1.22606 1.67957 1.24293 0.98320 0.83719 1.02935 1.20367 0.89913 0.98599 1.04402 1.21009 0.91577 0.97611 1.09989 1.19590 1.03516 0.87177 0.95858 1.21633 1.03750 0.93507 0.98485 1.20476 0.77271 0.88768 0.83386 1.90657 1.52793 1.69065 1.31022 1.48097 1.66880 1.12162 1.05891 1.21801 0.99614 0.96181 0.83408 1.21586 0.96434 0.98386 1.00356 1.20233 0.93543 0.89942 0.89998 0.96601 1.22650 0.96870 0.97444 0.96708 0.90584 1.23134 1.00699 0.94597 0.99699 1.21243 0.95619 0.86423 0.91539 1.44317 1.46930 1.04050 1.36640 1.18944 1.15394 0.93985 1.07056 0.90372 1.24773 1.00113 0.95689 0.99695 1.69953 1.41481 1.02362 1.42841 0.86201 0.80018 0.77660 0.82344 1.21690 1.21770 1.20724 1.21419 0.97035 0.80687 1.00440 0.90166 0.89853 0.90536 0.89906 0.88975 0.89056 0.89744 0.89747 0.88949 0.88972 0.89125 0.91020 0.90617 0.92795 0.92024 0.92363 0.93527 0.93957 0.93769 0.90322 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.39 36.01 0.37 -0.27 16 2 C 0.02 0.26 7.33 -82.10 -0.60 -0.34 16 3 N -0.37 -4.66 12.07 33.42 0.40 -4.26 16 4 O 0.09 1.10 11.20 17.19 0.19 1.29 16 5 C -0.03 -0.28 7.49 -35.31 -0.26 -0.55 16 6 C -0.08 -0.47 10.23 36.00 0.37 -0.10 16 7 C -0.20 -2.04 5.58 -104.42 -0.58 -2.62 16 8 C -0.02 -0.24 4.83 -27.88 -0.13 -0.37 16 9 C -0.13 -1.44 4.04 -27.88 -0.11 -1.55 16 10 C 0.51 7.47 7.71 -10.98 -0.08 7.39 16 11 O -0.56 -9.67 15.41 5.56 0.09 -9.59 16 12 N -0.60 -9.30 2.94 -173.30 -0.51 -9.81 16 13 C 0.11 1.69 6.27 -3.67 -0.02 1.66 16 14 C -0.13 -2.05 5.19 -27.65 -0.14 -2.19 16 15 C 0.17 3.21 2.85 -68.37 -0.19 3.01 16 16 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 17 C -0.12 -1.97 3.84 -88.64 -0.34 -2.31 16 18 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.14 -2.54 6.28 -24.33 -0.15 -2.69 16 20 C 0.18 4.00 4.64 -2.74 -0.01 3.99 16 21 N -0.59 -13.62 3.12 -164.49 -0.51 -14.13 16 22 C -0.23 -5.67 9.02 -15.06 -0.14 -5.80 16 23 H 0.08 1.88 6.69 -52.48 -0.35 1.52 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -25.67 10.38 55.49 0.58 -25.09 16 26 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 C 0.13 2.16 5.44 -4.18 -0.02 2.14 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 39 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 40 H 0.09 0.90 7.78 -51.92 -0.40 0.50 16 41 H 0.09 1.63 7.48 -51.93 -0.39 1.24 16 42 H 0.07 0.85 5.99 -51.93 -0.31 0.54 16 43 H 0.08 1.25 7.01 -51.93 -0.36 0.89 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.05 1.17 6.99 -51.93 -0.36 0.81 16 48 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 49 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.08 1.35 7.00 -51.93 -0.36 0.98 16 51 H 0.08 1.51 6.79 -51.93 -0.35 1.16 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -30.81 397.61 -9.27 -40.08 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.31 Total: 0.42 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.16 Total: -0.86 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.04 Total: -53.29 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.28 Total: -8.30 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.81 -9.27 -40.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036891230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.206 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds