Wall clock time and date at job start Wed Apr 1 2020 04:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.78135 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47244 * 89.99492 * 8 7 5 10 10 C 1.50701 * 109.47244 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99817 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99560 * 180.02562 * 10 9 8 13 13 C 1.47142 * 121.01647 * 0.02562 * 12 10 9 14 14 C 1.53042 * 107.68524 * 122.56267 * 13 12 10 15 15 C 1.51136 * 111.11905 * 54.39440 * 14 13 12 16 16 H 1.08994 * 108.46039 * 185.38939 * 15 14 13 17 17 C 1.53991 * 113.17550 * 304.88874 * 15 14 13 18 18 H 1.08996 * 112.71618 * 284.02807 * 17 15 14 19 19 C 1.56017 * 100.39067 * 163.65720 * 17 15 14 20 20 C 1.54500 * 102.62353 * 323.14254 * 19 17 15 21 21 N 1.46473 * 113.22907 * 65.10583 * 15 14 13 22 22 C 1.36934 * 126.05506 * 29.48086 * 21 15 14 23 23 H 1.08004 * 120.00355 * 359.97438 * 22 21 15 24 24 C 1.38817 * 120.00115 * 179.97438 * 22 21 15 25 25 N 1.31617 * 119.99660 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99964 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47173 * 90.00187 * 26 24 22 28 28 H 1.48497 * 109.46864 * 209.99683 * 26 24 22 29 29 H 1.48498 * 109.47308 * 330.00135 * 26 24 22 30 30 C 1.46529 * 121.00634 * 179.72533 * 12 10 9 31 31 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 32 32 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 33 33 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 34 34 H 1.09002 * 109.47010 * 359.97322 * 6 5 4 35 35 H 1.08996 * 109.47599 * 119.97086 * 6 5 4 36 36 H 1.08996 * 109.47212 * 239.97649 * 6 5 4 37 37 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 38 38 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 39 39 H 1.08997 * 109.47239 * 300.00611 * 9 8 7 40 40 H 1.09008 * 109.46959 * 60.00439 * 9 8 7 41 41 H 1.09003 * 109.81264 * 242.10370 * 13 12 10 42 42 H 1.08993 * 109.81870 * 3.00680 * 13 12 10 43 43 H 1.09005 * 109.15045 * 174.82217 * 14 13 12 44 44 H 1.09005 * 109.14676 * 294.02980 * 14 13 12 45 45 H 1.09002 * 110.77776 * 204.86233 * 19 17 15 46 46 H 1.08994 * 110.93956 * 81.50085 * 19 17 15 47 47 H 1.09001 * 109.90218 * 263.44958 * 20 19 17 48 48 H 1.09002 * 110.05077 * 142.29073 * 20 19 17 49 49 H 0.97000 * 119.99384 * 180.02562 * 25 24 22 50 50 H 1.08999 * 109.35108 * 355.82936 * 30 12 10 51 51 H 1.09001 * 109.34498 * 115.38247 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0014 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 6 1.8252 -3.0782 1.4432 10 6 1.4296 -4.5324 1.4436 11 8 1.2709 -5.1178 0.3934 12 7 1.2523 -5.1821 2.6110 13 6 1.4384 -4.4934 3.8979 14 6 0.1311 -4.6160 4.6842 15 6 -0.2930 -6.0609 4.8137 16 1 -1.2712 -6.0918 5.2934 17 6 -0.4121 -6.7814 3.4580 18 1 -1.3140 -6.5045 2.9120 19 6 -0.4204 -8.2686 3.9295 20 6 0.5731 -8.2533 5.1126 21 7 0.6362 -6.8666 5.6093 22 6 1.4242 -6.4122 6.6329 23 1 1.3932 -5.3707 6.9170 24 6 2.2628 -7.2904 7.3056 25 7 2.3009 -8.5596 6.9592 26 14 3.3382 -6.6704 8.7015 27 1 2.5990 -6.7850 9.9844 28 1 4.5781 -7.4848 8.7703 29 1 3.6925 -5.2487 8.4596 30 6 0.8619 -6.5942 2.6372 31 1 -0.3633 -0.0003 -1.0277 32 1 -0.3633 -0.8898 0.5141 33 1 -0.3633 0.8902 0.5134 34 1 5.7357 -0.6672 0.0018 35 1 4.9549 -1.9964 0.8915 36 1 4.9560 -1.9967 -0.8884 37 1 1.0051 -2.7040 -0.5133 38 1 2.7228 -3.1704 -0.5129 39 1 2.7792 -2.9606 1.9572 40 1 1.0614 -2.4942 1.9568 41 1 2.2496 -4.9630 4.4543 42 1 1.6683 -3.4422 3.7247 43 1 0.2714 -4.1939 5.6793 44 1 -0.6507 -4.0597 4.1669 45 1 -0.0672 -8.9276 3.1364 46 1 -1.4145 -8.5659 4.2631 47 1 1.5590 -8.5711 4.7733 48 1 0.2219 -8.9153 5.9041 49 1 2.8867 -9.1732 7.4295 50 1 0.6869 -6.9395 1.6183 51 1 1.6642 -7.1824 3.0827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036891230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:59 Heat of formation + Delta-G solvation = 23.578354 kcal Electronic energy + Delta-G solvation = -31732.811490 eV Core-core repulsion = 27634.987144 eV Total energy + Delta-G solvation = -4097.824346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.88777 -41.47937 -39.77466 -36.86535 -36.41895 -34.75450 -34.57409 -33.16710 -32.73379 -31.02691 -29.60680 -29.35110 -28.53769 -27.04926 -26.29215 -24.83435 -23.94568 -22.35754 -21.79722 -21.06397 -20.72307 -19.56391 -18.66363 -18.41771 -18.10931 -17.59219 -16.99962 -16.86124 -16.56809 -16.15468 -15.65987 -15.39844 -15.24172 -14.82516 -14.53983 -14.40958 -14.27123 -14.00536 -13.94221 -13.87384 -13.72849 -13.60006 -13.44944 -13.23141 -13.15033 -13.01263 -12.87935 -12.81054 -12.58471 -12.51950 -12.27637 -12.19454 -11.96881 -11.68392 -11.62793 -11.49493 -11.44458 -11.15958 -10.83498 -10.70721 -10.61042 -10.03408 -9.53375 -8.77877 -7.76923 -5.09740 0.51419 1.21386 1.49708 1.50494 1.58294 1.68489 2.09049 2.25413 2.54618 3.24836 3.42740 3.52496 3.57031 3.64099 3.84993 3.86947 3.97026 4.05533 4.10656 4.20980 4.29328 4.30322 4.34063 4.43978 4.49740 4.60341 4.60974 4.65508 4.67237 4.71615 4.73502 4.79028 4.85132 4.87729 4.93364 4.96019 5.00488 5.07418 5.09216 5.16994 5.20071 5.27914 5.30121 5.37405 5.42358 5.57389 5.63211 5.70830 5.83085 6.26742 6.57109 7.17151 7.22200 7.33415 7.87134 8.54247 9.34699 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.002810 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.082573 B = 9963.203509 C =10959.848089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 N -0.401 5.401 4 O 0.080 5.920 5 C -0.023 4.023 6 C -0.078 4.078 7 C -0.209 4.209 8 C -0.013 4.013 9 C -0.125 4.125 10 C 0.515 3.485 11 O -0.584 6.584 12 N -0.602 5.602 13 C 0.119 3.881 14 C -0.125 4.125 15 C 0.162 3.838 16 H 0.013 0.987 17 C -0.102 4.102 18 H 0.104 0.896 19 C -0.131 4.131 20 C 0.186 3.814 21 N -0.608 5.608 22 C -0.216 4.216 23 H 0.091 0.909 24 C -0.069 4.069 25 N -0.954 5.954 26 Si 0.966 3.034 27 H -0.294 1.294 28 H -0.304 1.304 29 H -0.262 1.262 30 C 0.133 3.867 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.056 0.944 42 H 0.111 0.889 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.011 0.989 48 H 0.002 0.998 49 H 0.241 0.759 50 H 0.080 0.920 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 14.722 -14.159 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 N -0.110 5.110 4 O 0.018 5.982 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.213 4.213 8 C -0.051 4.051 9 C -0.165 4.165 10 C 0.305 3.695 11 O -0.465 6.465 12 N -0.333 5.333 13 C -0.003 4.003 14 C -0.164 4.164 15 C 0.055 3.945 16 H 0.030 0.970 17 C -0.122 4.122 18 H 0.122 0.878 19 C -0.170 4.170 20 C 0.060 3.940 21 N -0.333 5.333 22 C -0.345 4.345 23 H 0.109 0.891 24 C -0.262 4.262 25 N -0.604 5.604 26 Si 0.796 3.204 27 H -0.221 1.221 28 H -0.231 1.231 29 H -0.187 1.187 30 C 0.010 3.990 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.075 0.925 42 H 0.129 0.871 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.029 0.971 48 H 0.020 0.980 49 H 0.051 0.949 50 H 0.098 0.902 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.364 15.686 -14.548 21.437 hybrid contribution 0.610 -1.233 1.309 1.899 sum -0.754 14.452 -13.239 19.614 Atomic orbital electron populations 1.20308 0.84427 1.04588 1.04264 1.23955 1.00109 0.88421 1.01497 1.73832 0.89839 1.25082 1.22264 1.84763 1.21460 1.23588 1.68366 1.24889 0.99498 0.83158 1.01087 1.20565 0.88765 0.98792 1.05333 1.21016 0.91746 0.97394 1.11112 1.19462 1.03287 0.86962 0.95430 1.21645 1.04981 0.90555 0.99317 1.21097 0.76050 0.90021 0.82334 1.90651 1.53860 1.70091 1.31945 1.48131 1.67141 1.11454 1.06598 1.21748 0.98002 0.97893 0.82677 1.21549 0.97784 0.96265 1.00769 1.20479 0.92225 0.91598 0.90183 0.96996 1.22609 0.97826 0.95928 0.95823 0.87808 1.23013 0.99803 0.96169 0.97976 1.20952 0.94995 0.85987 0.92034 1.44545 1.47120 1.04832 1.36809 1.19350 1.14222 0.94339 1.06565 0.89101 1.25522 1.02224 0.95986 1.02445 1.70180 1.42593 1.03472 1.44189 0.85244 0.77827 0.77836 0.79486 1.22129 1.23079 1.18698 1.21168 0.96024 0.81759 1.00019 0.89240 0.88666 0.90239 0.88551 0.88018 0.87901 0.90122 0.89955 0.87395 0.87094 0.92522 0.87072 0.91097 0.89679 0.90517 0.90999 0.97096 0.97986 0.94938 0.90207 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.39 71.24 0.74 -0.38 16 2 C 0.02 0.38 7.33 43.58 0.32 0.70 16 3 N -0.40 -9.61 12.07 -49.56 -0.60 -10.20 16 4 O 0.08 1.74 11.20 71.69 0.80 2.55 16 5 C -0.02 -0.39 7.49 25.04 0.19 -0.21 16 6 C -0.08 -0.77 10.23 71.23 0.73 -0.04 16 7 C -0.21 -3.79 5.58 -19.74 -0.11 -3.90 16 8 C -0.01 -0.23 4.83 29.85 0.14 -0.09 16 9 C -0.13 -2.22 4.04 29.85 0.12 -2.10 16 10 C 0.51 13.53 7.71 87.66 0.68 14.20 16 11 O -0.58 -19.08 15.41 -3.02 -0.05 -19.12 16 12 N -0.60 -17.29 2.94 -820.59 -2.41 -19.70 16 13 C 0.12 3.24 6.27 86.27 0.54 3.78 16 14 C -0.12 -3.59 5.19 30.00 0.16 -3.43 16 15 C 0.16 5.81 2.85 44.72 0.13 5.93 16 16 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 17 C -0.10 -3.23 3.84 -9.51 -0.04 -3.27 16 18 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 19 C -0.13 -4.58 6.28 32.15 0.20 -4.38 16 20 C 0.19 8.74 4.64 86.71 0.40 9.15 16 21 N -0.61 -28.11 3.12 -674.34 -2.11 -30.22 16 22 C -0.22 -10.89 9.02 84.04 0.76 -10.13 16 23 H 0.09 4.26 6.69 -2.91 -0.02 4.24 16 24 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 25 N -0.95 -55.83 10.38 21.65 0.22 -55.61 16 26 Si 0.97 43.78 29.55 68.60 2.03 45.81 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 30 C 0.13 4.41 5.44 86.28 0.47 4.87 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.08 1.49 8.04 -2.39 -0.02 1.47 16 39 H 0.11 1.64 7.90 -2.39 -0.02 1.62 16 40 H 0.11 1.62 7.78 -2.38 -0.02 1.61 16 41 H 0.06 1.96 7.48 -2.39 -0.02 1.94 16 42 H 0.11 2.15 5.99 -2.39 -0.01 2.14 16 43 H 0.07 2.13 7.01 -2.38 -0.02 2.11 16 44 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.08 2.45 7.97 -2.39 -0.02 2.43 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.01 0.58 6.99 -2.39 -0.02 0.56 16 48 H 0.00 0.10 7.56 -2.39 -0.02 0.08 16 49 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 50 H 0.08 2.62 7.00 -2.39 -0.02 2.61 16 51 H 0.04 1.77 6.79 -2.39 -0.02 1.76 16 Total: -1.00 -69.83 397.61 4.70 -65.13 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.92 Total: 13.92 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.89 Total: 7.44 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -4.89 Total: -115.73 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 0.76 Total: -16.58 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.83 4.70 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036891230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.705 kcal (2) G-P(sol) polarization free energy of solvation -69.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds