Wall clock time and date at job start Wed Apr 1 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30005 * 127.33981 * 2 1 4 4 O 1.20659 * 112.30458 * 180.02562 * 3 2 1 5 5 C 1.33487 * 113.15525 * 359.71624 * 4 3 2 6 6 C 1.50696 * 126.82972 * 180.31467 * 5 4 3 7 7 C 1.37363 * 106.34260 * 0.45289 * 5 4 3 8 8 C 1.47390 * 128.56432 * 179.85877 * 7 5 4 9 9 O 1.21613 * 120.00116 * 269.67304 * 8 7 5 10 10 N 1.34775 * 120.00423 * 89.67298 * 8 7 5 11 11 C 1.46922 * 120.63533 * 179.97438 * 10 8 7 12 12 C 1.53196 * 108.77974 * 233.59373 * 11 10 8 13 13 C 1.53041 * 109.30923 * 305.36191 * 12 11 10 14 14 C 1.53004 * 109.45821 * 181.38532 * 13 12 11 15 15 H 1.08995 * 110.88318 * 302.42718 * 14 13 12 16 16 C 1.55153 * 111.00118 * 66.35265 * 14 13 12 17 17 C 1.54342 * 103.01803 * 153.38252 * 16 14 13 18 18 N 1.47020 * 107.26442 * 338.13396 * 17 16 14 19 19 C 1.36934 * 125.64874 * 178.85000 * 18 17 16 20 20 H 1.08006 * 120.00023 * 205.70801 * 19 18 17 21 21 C 1.38807 * 119.99844 * 25.70743 * 19 18 17 22 22 N 1.31628 * 119.99850 * 214.47890 * 21 19 18 23 23 Si 1.86795 * 120.00267 * 34.47921 * 21 19 18 24 24 H 1.48505 * 109.46853 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47275 * 119.99928 * 23 21 19 26 26 H 1.48505 * 109.47472 * 240.00188 * 23 21 19 27 27 C 1.47429 * 108.70257 * 358.58958 * 18 17 16 28 28 C 1.53043 * 109.53752 * 61.36825 * 13 12 11 29 29 C 1.46930 * 120.62837 * 359.97438 * 10 8 7 30 30 H 1.09008 * 109.46708 * 269.95482 * 1 2 3 31 31 H 1.08995 * 109.47409 * 29.95232 * 1 2 3 32 32 H 1.08998 * 109.47529 * 149.95530 * 1 2 3 33 33 H 1.09004 * 109.47137 * 270.16957 * 6 5 4 34 34 H 1.09004 * 109.47106 * 30.16555 * 6 5 4 35 35 H 1.08996 * 109.47756 * 150.16864 * 6 5 4 36 36 H 1.08998 * 109.58728 * 113.80186 * 11 10 8 37 37 H 1.09004 * 109.70299 * 353.44732 * 11 10 8 38 38 H 1.08999 * 109.49778 * 185.41151 * 12 11 10 39 39 H 1.08997 * 109.49875 * 65.31565 * 12 11 10 40 40 H 1.09001 * 109.46156 * 301.36030 * 13 12 11 41 41 H 1.09003 * 110.71827 * 271.93453 * 16 14 13 42 42 H 1.08996 * 110.72218 * 35.21527 * 16 14 13 43 43 H 1.08999 * 109.98711 * 218.66405 * 17 16 14 44 44 H 1.08993 * 109.78193 * 97.49373 * 17 16 14 45 45 H 0.96993 * 119.99885 * 5.09139 * 22 21 19 46 46 H 1.09003 * 110.36479 * 143.19088 * 27 18 17 47 47 H 1.08993 * 110.36808 * 265.39901 * 27 18 17 48 48 H 1.08999 * 109.49893 * 58.58297 * 28 13 12 49 49 H 1.09000 * 109.49873 * 178.68499 * 28 13 12 50 50 H 1.09001 * 109.58849 * 246.19602 * 29 10 8 51 51 H 1.08998 * 109.58477 * 6.48049 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0005 5 6 3.6494 -0.6009 0.0052 6 6 4.9710 -1.3247 0.0129 7 6 2.3991 -1.1697 -0.0006 8 6 2.0400 -2.5992 -0.0009 9 8 1.8915 -3.1887 -1.0541 10 7 1.8762 -3.2531 1.1662 11 6 1.5178 -4.6779 1.1822 12 6 0.2682 -4.8624 2.0490 13 6 0.5201 -4.2621 3.4341 14 6 -0.7135 -4.4751 4.3139 15 1 -1.5980 -4.0318 3.8567 16 6 -0.9339 -5.9828 4.6067 17 6 -1.6867 -5.9688 5.9541 18 7 -1.4003 -4.6798 6.6006 19 6 -1.8982 -4.2637 7.8064 20 1 -1.9914 -3.2084 8.0170 21 6 -2.2830 -5.1980 8.7580 22 7 -3.3065 -4.9499 9.5476 23 14 -1.3484 -6.8074 8.9182 24 1 -0.2484 -6.8424 7.9211 25 1 -0.7808 -6.9162 10.2861 26 1 -2.2732 -7.9434 8.6742 27 6 -0.4832 -3.9120 5.7385 28 6 0.7976 -2.7631 3.2995 29 6 2.0528 -2.5547 2.4468 30 1 -0.3633 -0.0008 1.0278 31 1 -0.3634 0.8904 -0.5131 32 1 -0.3634 -0.8895 -0.5145 33 1 5.2951 -1.5004 -1.0129 34 1 5.7146 -0.7180 0.5299 35 1 4.8597 -2.2792 0.5272 36 1 2.3412 -5.2572 1.5999 37 1 1.3112 -5.0163 0.1668 38 1 0.0476 -5.9252 2.1478 39 1 -0.5768 -4.3569 1.5816 40 1 1.3807 -4.7510 3.8908 41 1 -1.5420 -6.4421 3.8274 42 1 0.0204 -6.4996 4.7077 43 1 -1.3366 -6.7858 6.5849 44 1 -2.7581 -6.0657 5.7790 45 1 -3.8372 -4.1488 9.4164 46 1 -0.7307 -2.8509 5.7716 47 1 0.5498 -4.0696 6.0483 48 1 -0.0524 -2.2773 2.8203 49 1 0.9538 -2.3318 4.2883 50 1 2.9199 -2.9606 2.9679 51 1 2.2010 -1.4903 2.2650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039108656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:31 Heat of formation + Delta-G solvation = 39.996304 kcal Electronic energy + Delta-G solvation = -31552.142819 eV Core-core repulsion = 27455.030409 eV Total energy + Delta-G solvation = -4097.112410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.22430 -40.48460 -38.64264 -36.85924 -34.97486 -34.11709 -33.70429 -32.12902 -31.45186 -29.64014 -29.11396 -28.50230 -28.11716 -25.82444 -24.32611 -23.72314 -22.86998 -21.37711 -20.52515 -20.22529 -19.70760 -19.49963 -18.25733 -17.83837 -17.44935 -16.86597 -16.22195 -15.59304 -15.20196 -15.01605 -14.66099 -14.40677 -14.10201 -13.91928 -13.87851 -13.75116 -13.60100 -13.51355 -13.23930 -13.10131 -13.08788 -12.79185 -12.75264 -12.62181 -12.22674 -12.18126 -11.51784 -11.46559 -11.30676 -11.20131 -10.95997 -10.82698 -10.65299 -10.50451 -10.29984 -10.22786 -10.11114 -9.99799 -9.68291 -9.54436 -9.24642 -8.96135 -8.33285 -6.96181 -6.38269 -3.24576 0.93368 1.56747 2.04269 2.42055 2.79004 3.47684 3.53538 3.68626 3.70360 3.86504 4.20483 4.48470 4.51047 4.63548 4.64618 4.66756 4.79485 4.86635 4.88518 4.98239 5.01752 5.07968 5.14025 5.14421 5.18059 5.24891 5.30214 5.34539 5.42747 5.45377 5.47068 5.52319 5.63082 5.65615 5.70153 5.78203 5.84369 5.95809 6.01170 6.04634 6.23955 6.25397 6.30413 6.37849 6.57123 6.71591 6.87587 6.89106 6.98885 7.74283 7.87906 7.91568 8.38704 9.00147 9.60951 10.35348 11.04354 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.002415 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.136705 B =11592.339686 C =12075.890650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.354 5.354 4 O 0.097 5.903 5 C 0.015 3.985 6 C -0.078 4.078 7 C -0.247 4.247 8 C 0.601 3.399 9 O -0.530 6.530 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.128 4.128 13 C -0.074 4.074 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.125 4.125 17 C 0.122 3.878 18 N -0.604 5.604 19 C -0.342 4.342 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 1.035 2.965 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.294 1.294 27 C 0.136 3.864 28 C -0.129 4.129 29 C 0.108 3.892 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.028 0.972 44 H 0.032 0.968 45 H 0.267 0.733 46 H 0.038 0.962 47 H 0.018 0.982 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.073 0.927 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.341 5.613 -21.176 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.061 5.061 4 O 0.035 5.965 5 C -0.048 4.048 6 C -0.135 4.135 7 C -0.254 4.254 8 C 0.387 3.613 9 O -0.406 6.406 10 N -0.330 5.330 11 C -0.010 4.010 12 C -0.166 4.166 13 C -0.093 4.093 14 C -0.115 4.115 15 H 0.092 0.908 16 C -0.163 4.163 17 C -0.003 4.003 18 N -0.331 5.331 19 C -0.469 4.469 20 H 0.085 0.915 21 C -0.203 4.203 22 N -0.539 5.539 23 Si 0.866 3.134 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.221 1.221 27 C 0.010 3.990 28 C -0.168 4.168 29 C -0.014 4.014 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.036 0.964 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.128 5.271 -20.741 26.207 hybrid contribution -0.222 0.630 -0.688 0.959 sum 14.905 5.902 -21.429 26.762 Atomic orbital electron populations 1.20254 0.85049 1.04326 1.04082 1.24756 0.98631 0.86344 1.00815 1.73632 0.89082 1.23268 1.20074 1.84542 1.21532 1.22469 1.67920 1.24606 0.97318 0.83852 0.99059 1.20459 0.89069 0.99193 1.04827 1.21839 0.92954 0.95288 1.15347 1.16918 0.76800 0.83932 0.83626 1.90817 1.50911 1.67931 1.30984 1.48079 1.68024 1.11219 1.05631 1.21720 0.97466 0.79715 1.02102 1.21984 0.97258 1.02115 0.95260 1.21105 0.98596 0.94846 0.94735 1.22348 0.96696 0.96404 0.96025 0.90761 1.22608 1.00184 0.95879 0.97586 1.21614 0.97315 0.89904 0.91451 1.44713 1.52084 1.16184 1.20135 1.19799 1.41707 0.93705 0.91655 0.91541 1.26051 0.97786 1.02959 0.93496 1.70862 1.13313 1.26911 1.42797 0.84293 0.77202 0.76780 0.75169 1.20519 1.22582 1.22081 1.21659 0.93279 0.95478 0.88582 1.21984 0.97104 0.97338 1.00334 1.21812 0.98958 0.97209 0.83449 0.89360 0.89809 0.89775 0.88625 0.88934 0.88947 0.91085 0.88907 0.90129 0.91446 0.90802 0.91766 0.91880 0.95408 0.95015 0.92302 0.94369 0.96397 0.91421 0.89851 0.90842 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.49 36.01 0.38 -0.30 16 2 C 0.06 0.60 7.55 -79.77 -0.60 0.00 16 3 N -0.35 -4.03 12.01 34.78 0.42 -3.61 16 4 O 0.10 0.97 11.06 18.67 0.21 1.18 16 5 C 0.02 0.13 7.55 -34.63 -0.26 -0.13 16 6 C -0.08 -0.38 10.33 36.00 0.37 -0.01 16 7 C -0.25 -2.57 4.19 -102.89 -0.43 -3.00 16 8 C 0.60 6.85 7.49 -12.54 -0.09 6.76 16 9 O -0.53 -7.74 16.52 5.27 0.09 -7.65 16 10 N -0.60 -5.73 2.97 -174.06 -0.52 -6.25 16 11 C 0.11 1.02 6.43 -3.71 -0.02 1.00 16 12 C -0.13 -1.23 5.23 -26.61 -0.14 -1.37 16 13 C -0.07 -0.81 1.66 -90.57 -0.15 -0.96 16 14 C -0.10 -1.41 2.57 -88.47 -0.23 -1.64 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 16 C -0.12 -1.96 5.57 -24.89 -0.14 -2.10 16 17 C 0.12 2.63 6.03 -3.06 -0.02 2.61 16 18 N -0.60 -14.66 3.06 -170.07 -0.52 -15.18 16 19 C -0.34 -9.72 10.24 -15.06 -0.15 -9.88 16 20 H 0.07 2.01 8.06 -52.48 -0.42 1.59 16 21 C 0.00 0.02 5.29 -17.43 -0.09 -0.07 16 22 N -0.90 -27.84 13.70 55.49 0.76 -27.08 16 23 Si 1.04 26.00 26.22 -169.99 -4.46 21.54 16 24 H -0.28 -6.59 6.16 56.52 0.35 -6.25 16 25 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 C 0.14 2.60 5.65 -2.53 -0.01 2.58 16 28 C -0.13 -1.28 5.18 -26.62 -0.14 -1.42 16 29 C 0.11 0.92 6.34 -3.72 -0.02 0.90 16 30 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.93 7.01 -51.93 -0.36 0.57 16 38 H 0.08 0.73 7.45 -51.93 -0.39 0.35 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.82 8.11 -51.93 -0.42 0.39 16 41 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 43 H 0.03 0.64 3.83 -51.93 -0.20 0.44 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.27 8.15 8.73 -40.82 -0.36 7.80 16 46 H 0.04 0.74 8.01 -51.93 -0.42 0.32 16 47 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.87 7.21 -51.93 -0.37 0.50 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.08 0.67 6.30 -51.93 -0.33 0.34 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -34.45 400.25 -8.19 -42.64 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -8.44 Total: -4.58 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.76 Total: -7.04 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.14 Total: -52.12 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: 0.29 Total: -6.47 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.46 Total: 21.54 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.45 -8.19 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039108656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.635 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds