Wall clock time and date at job start Wed Apr 1 2020 04:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30005 * 127.33981 * 2 1 4 4 O 1.20659 * 112.30458 * 180.02562 * 3 2 1 5 5 C 1.33487 * 113.15525 * 359.71624 * 4 3 2 6 6 C 1.50696 * 126.82972 * 180.31467 * 5 4 3 7 7 C 1.37363 * 106.34260 * 0.45289 * 5 4 3 8 8 C 1.47390 * 128.56432 * 179.85877 * 7 5 4 9 9 O 1.21613 * 120.00116 * 269.67304 * 8 7 5 10 10 N 1.34775 * 120.00423 * 89.67298 * 8 7 5 11 11 C 1.46922 * 120.63533 * 179.97438 * 10 8 7 12 12 C 1.53196 * 108.77974 * 233.59373 * 11 10 8 13 13 C 1.53041 * 109.30923 * 305.36191 * 12 11 10 14 14 C 1.53004 * 109.45821 * 181.38532 * 13 12 11 15 15 H 1.08995 * 110.88318 * 302.42718 * 14 13 12 16 16 C 1.55153 * 111.00118 * 66.35265 * 14 13 12 17 17 C 1.54342 * 103.01803 * 153.38252 * 16 14 13 18 18 N 1.47020 * 107.26442 * 338.13396 * 17 16 14 19 19 C 1.36934 * 125.64874 * 178.85000 * 18 17 16 20 20 H 1.08006 * 120.00023 * 205.70801 * 19 18 17 21 21 C 1.38807 * 119.99844 * 25.70743 * 19 18 17 22 22 N 1.31628 * 119.99850 * 214.47890 * 21 19 18 23 23 Si 1.86795 * 120.00267 * 34.47921 * 21 19 18 24 24 H 1.48505 * 109.46853 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47275 * 119.99928 * 23 21 19 26 26 H 1.48505 * 109.47472 * 240.00188 * 23 21 19 27 27 C 1.47429 * 108.70257 * 358.58958 * 18 17 16 28 28 C 1.53043 * 109.53752 * 61.36825 * 13 12 11 29 29 C 1.46930 * 120.62837 * 359.97438 * 10 8 7 30 30 H 1.09008 * 109.46708 * 269.95482 * 1 2 3 31 31 H 1.08995 * 109.47409 * 29.95232 * 1 2 3 32 32 H 1.08998 * 109.47529 * 149.95530 * 1 2 3 33 33 H 1.09004 * 109.47137 * 270.16957 * 6 5 4 34 34 H 1.09004 * 109.47106 * 30.16555 * 6 5 4 35 35 H 1.08996 * 109.47756 * 150.16864 * 6 5 4 36 36 H 1.08998 * 109.58728 * 113.80186 * 11 10 8 37 37 H 1.09004 * 109.70299 * 353.44732 * 11 10 8 38 38 H 1.08999 * 109.49778 * 185.41151 * 12 11 10 39 39 H 1.08997 * 109.49875 * 65.31565 * 12 11 10 40 40 H 1.09001 * 109.46156 * 301.36030 * 13 12 11 41 41 H 1.09003 * 110.71827 * 271.93453 * 16 14 13 42 42 H 1.08996 * 110.72218 * 35.21527 * 16 14 13 43 43 H 1.08999 * 109.98711 * 218.66405 * 17 16 14 44 44 H 1.08993 * 109.78193 * 97.49373 * 17 16 14 45 45 H 0.96993 * 119.99885 * 5.09139 * 22 21 19 46 46 H 1.09003 * 110.36479 * 143.19088 * 27 18 17 47 47 H 1.08993 * 110.36808 * 265.39901 * 27 18 17 48 48 H 1.08999 * 109.49893 * 58.58297 * 28 13 12 49 49 H 1.09000 * 109.49873 * 178.68499 * 28 13 12 50 50 H 1.09001 * 109.58849 * 246.19602 * 29 10 8 51 51 H 1.08998 * 109.58477 * 6.48049 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0005 5 6 3.6494 -0.6009 0.0052 6 6 4.9710 -1.3247 0.0129 7 6 2.3991 -1.1697 -0.0006 8 6 2.0400 -2.5992 -0.0009 9 8 1.8915 -3.1887 -1.0541 10 7 1.8762 -3.2531 1.1662 11 6 1.5178 -4.6779 1.1822 12 6 0.2682 -4.8624 2.0490 13 6 0.5201 -4.2621 3.4341 14 6 -0.7135 -4.4751 4.3139 15 1 -1.5980 -4.0318 3.8567 16 6 -0.9339 -5.9828 4.6067 17 6 -1.6867 -5.9688 5.9541 18 7 -1.4003 -4.6798 6.6006 19 6 -1.8982 -4.2637 7.8064 20 1 -1.9914 -3.2084 8.0170 21 6 -2.2830 -5.1980 8.7580 22 7 -3.3065 -4.9499 9.5476 23 14 -1.3484 -6.8074 8.9182 24 1 -0.2484 -6.8424 7.9211 25 1 -0.7808 -6.9162 10.2861 26 1 -2.2732 -7.9434 8.6742 27 6 -0.4832 -3.9120 5.7385 28 6 0.7976 -2.7631 3.2995 29 6 2.0528 -2.5547 2.4468 30 1 -0.3633 -0.0008 1.0278 31 1 -0.3634 0.8904 -0.5131 32 1 -0.3634 -0.8895 -0.5145 33 1 5.2951 -1.5004 -1.0129 34 1 5.7146 -0.7180 0.5299 35 1 4.8597 -2.2792 0.5272 36 1 2.3412 -5.2572 1.5999 37 1 1.3112 -5.0163 0.1668 38 1 0.0476 -5.9252 2.1478 39 1 -0.5768 -4.3569 1.5816 40 1 1.3807 -4.7510 3.8908 41 1 -1.5420 -6.4421 3.8274 42 1 0.0204 -6.4996 4.7077 43 1 -1.3366 -6.7858 6.5849 44 1 -2.7581 -6.0657 5.7790 45 1 -3.8372 -4.1488 9.4164 46 1 -0.7307 -2.8509 5.7716 47 1 0.5498 -4.0696 6.0483 48 1 -0.0524 -2.2773 2.8203 49 1 0.9538 -2.3318 4.2883 50 1 2.9199 -2.9606 2.9679 51 1 2.2010 -1.4903 2.2650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039108656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:30 Heat of formation + Delta-G solvation = 19.082869 kcal Electronic energy + Delta-G solvation = -31553.049694 eV Core-core repulsion = 27455.030409 eV Total energy + Delta-G solvation = -4098.019285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.97743 -41.33145 -39.85519 -38.05554 -35.75077 -35.28745 -34.63826 -33.80102 -32.20747 -31.19584 -29.85906 -29.60588 -28.96996 -26.95886 -25.57844 -24.74366 -23.96247 -22.29242 -22.00733 -21.25333 -20.88835 -20.28156 -19.51901 -19.02717 -18.60721 -17.68443 -16.98071 -16.82393 -16.76817 -16.21215 -15.59056 -15.37235 -15.22903 -14.95274 -14.86898 -14.68540 -14.47604 -14.35379 -14.21329 -14.07324 -14.02972 -13.85784 -13.60437 -13.47781 -13.42934 -13.31757 -12.99326 -12.72966 -12.39013 -12.27887 -12.15889 -12.14246 -12.03478 -11.62010 -11.51204 -11.45717 -11.24650 -11.12338 -11.02725 -10.89946 -10.51611 -10.39229 -9.75997 -9.03173 -8.63985 -5.46409 0.25496 0.79854 1.21218 1.44572 1.52684 1.72179 1.72299 2.10018 2.55608 2.93801 2.98878 3.20366 3.45397 3.51099 3.63524 3.76784 3.81522 3.89456 4.03279 4.12261 4.20570 4.25835 4.34173 4.40249 4.42048 4.47835 4.49542 4.54430 4.56071 4.57457 4.59740 4.73024 4.76082 4.81404 4.88297 4.92545 4.92963 4.97740 5.00877 5.05928 5.08192 5.10110 5.18702 5.23553 5.33109 5.39500 5.52437 5.61931 5.74127 6.18072 6.20231 6.83228 6.92842 7.15727 7.53914 8.23966 8.75985 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.002415 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.136705 B =11592.339686 C =12075.890650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.048 3.952 3 N -0.377 5.377 4 O 0.092 5.908 5 C 0.031 3.969 6 C -0.079 4.079 7 C -0.272 4.272 8 C 0.606 3.394 9 O -0.568 6.568 10 N -0.590 5.590 11 C 0.112 3.888 12 C -0.120 4.120 13 C -0.064 4.064 14 C -0.079 4.079 15 H 0.067 0.933 16 C -0.112 4.112 17 C 0.110 3.890 18 N -0.627 5.627 19 C -0.336 4.336 20 H 0.030 0.970 21 C -0.055 4.055 22 N -0.937 5.937 23 Si 1.085 2.915 24 H -0.253 1.253 25 H -0.297 1.297 26 H -0.287 1.287 27 C 0.132 3.868 28 C -0.128 4.128 29 C 0.114 3.886 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.022 0.978 44 H 0.013 0.987 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.095 0.905 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.140 4.041 -22.835 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.086 5.086 4 O 0.032 5.968 5 C -0.033 4.033 6 C -0.136 4.136 7 C -0.279 4.279 8 C 0.393 3.607 9 O -0.448 6.448 10 N -0.322 5.322 11 C -0.009 4.009 12 C -0.159 4.159 13 C -0.082 4.082 14 C -0.098 4.098 15 H 0.085 0.915 16 C -0.149 4.149 17 C -0.015 4.015 18 N -0.354 5.354 19 C -0.465 4.465 20 H 0.048 0.952 21 C -0.252 4.252 22 N -0.578 5.578 23 Si 0.910 3.090 24 H -0.177 1.177 25 H -0.225 1.225 26 H -0.214 1.214 27 C 0.007 3.993 28 C -0.166 4.166 29 C -0.008 4.008 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.040 0.960 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.113 0.887 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.957 3.713 -22.415 28.959 hybrid contribution -1.122 1.247 -0.181 1.688 sum 16.834 4.960 -22.596 28.611 Atomic orbital electron populations 1.20305 0.84162 1.04547 1.04624 1.25091 0.99441 0.86454 1.00386 1.73621 0.89636 1.23939 1.21361 1.84514 1.21079 1.23248 1.67933 1.25258 0.98271 0.83195 0.96534 1.20705 0.87595 0.99379 1.05950 1.21843 0.93737 0.94859 1.17452 1.16972 0.76222 0.84065 0.83452 1.90796 1.52858 1.68786 1.32323 1.48131 1.67015 1.11509 1.05513 1.21781 0.97963 0.79473 1.01668 1.21914 0.97198 1.02674 0.94067 1.21022 0.96863 0.95626 0.94734 1.22225 0.98395 0.95446 0.93777 0.91493 1.22609 1.00901 0.96655 0.94782 1.21820 0.97192 0.88199 0.94278 1.44854 1.53320 1.17912 1.19332 1.19664 1.40960 0.92172 0.93687 0.95239 1.27231 0.97912 1.06568 0.93509 1.70973 1.15036 1.27006 1.44749 0.83631 0.76687 0.72949 0.75739 1.17734 1.22473 1.21386 1.21837 0.92565 0.94532 0.90353 1.21939 0.97681 0.96695 1.00289 1.21829 0.98827 0.97465 0.82649 0.88594 0.89097 0.90012 0.87514 0.86577 0.88223 0.88891 0.89795 0.88765 0.92374 0.89543 0.88931 0.89642 0.96009 0.96935 0.93845 0.95508 0.95351 0.92165 0.90420 0.88690 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.49 71.24 0.75 -0.56 16 2 C 0.05 1.00 7.55 45.16 0.34 1.34 16 3 N -0.38 -8.37 12.01 -44.79 -0.54 -8.91 16 4 O 0.09 1.75 11.06 77.04 0.85 2.60 16 5 C 0.03 0.48 7.55 25.48 0.19 0.67 16 6 C -0.08 -0.54 10.33 71.23 0.74 0.19 16 7 C -0.27 -5.30 4.19 -18.75 -0.08 -5.38 16 8 C 0.61 12.83 7.49 86.65 0.65 13.48 16 9 O -0.57 -16.04 16.52 -4.07 -0.07 -16.11 16 10 N -0.59 -9.76 2.97 -822.84 -2.45 -12.20 16 11 C 0.11 1.67 6.43 86.36 0.56 2.22 16 12 C -0.12 -1.86 5.23 30.67 0.16 -1.70 16 13 C -0.06 -1.16 1.66 -10.76 -0.02 -1.17 16 14 C -0.08 -2.12 2.57 -9.40 -0.02 -2.14 16 15 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.11 -3.09 5.57 31.79 0.18 -2.92 16 17 C 0.11 4.53 6.03 86.74 0.52 5.05 16 18 N -0.63 -30.19 3.06 -691.96 -2.12 -32.31 16 19 C -0.34 -19.65 10.24 84.03 0.86 -18.79 16 20 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 21 C -0.05 -3.27 5.29 84.86 0.45 -2.82 16 22 N -0.94 -59.90 13.70 21.65 0.30 -59.61 16 23 Si 1.08 52.49 26.22 68.60 1.80 54.28 16 24 H -0.25 -11.00 6.16 99.48 0.61 -10.39 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 C 0.13 4.86 5.65 86.85 0.49 5.35 16 28 C -0.13 -2.21 5.18 30.67 0.16 -2.06 16 29 C 0.11 1.60 6.34 86.36 0.55 2.15 16 30 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.10 0.59 8.11 -2.39 -0.02 0.57 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.47 7.01 -2.38 -0.02 1.46 16 38 H 0.09 1.26 7.45 -2.39 -0.02 1.24 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.45 8.11 -2.39 -0.02 1.43 16 41 H 0.09 2.09 8.11 -2.39 -0.02 2.07 16 42 H 0.08 2.05 8.01 -2.39 -0.02 2.03 16 43 H 0.02 0.94 3.83 -2.39 -0.01 0.93 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.25 16.25 8.73 -92.71 -0.81 15.45 16 46 H 0.03 1.03 8.01 -2.39 -0.02 1.01 16 47 H 0.03 1.02 8.04 -2.39 -0.02 1.00 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.08 1.46 7.21 -2.39 -0.02 1.45 16 50 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.08 1.16 6.30 -2.39 -0.02 1.15 16 Total: -1.00 -77.99 400.25 5.03 -72.95 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.79 Total: 6.37 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 6.47 Total: -7.08 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -4.81 Total: -113.02 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.78 Total: -13.51 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 1.80 Total: 54.28 kcal Total: -77.99 5.03 -72.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039108656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.037 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds