Wall clock time and date at job start Wed Apr 1 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29929 * 125.37735 * 2 1 4 4 C 1.36071 * 108.47682 * 180.02562 * 3 2 1 5 5 C 1.47413 * 126.44830 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00194 * 173.89115 * 5 4 3 7 7 N 1.34774 * 120.00313 * 353.88783 * 5 4 3 8 8 C 1.46929 * 120.63567 * 172.88591 * 7 5 4 9 9 C 1.53191 * 108.77631 * 126.37101 * 8 7 5 10 10 C 1.53040 * 109.31099 * 54.63713 * 9 8 7 11 11 C 1.53001 * 109.46098 * 178.62646 * 10 9 8 12 12 H 1.08998 * 110.88173 * 60.72923 * 11 10 9 13 13 C 1.55163 * 111.00312 * 296.85133 * 11 10 9 14 14 C 1.54367 * 102.91686 * 206.45176 * 13 11 10 15 15 N 1.47023 * 107.29337 * 22.13875 * 14 13 11 16 16 C 1.36935 * 125.64907 * 181.05736 * 15 14 13 17 17 H 1.08001 * 119.99509 * 173.68128 * 16 15 14 18 18 C 1.38806 * 120.00182 * 353.68295 * 16 15 14 19 19 N 1.31617 * 120.00230 * 7.30021 * 18 16 15 20 20 Si 1.86809 * 119.99957 * 187.30674 * 18 16 15 21 21 H 1.48502 * 109.47266 * 94.97240 * 20 18 16 22 22 H 1.48501 * 109.46733 * 214.97472 * 20 18 16 23 23 H 1.48498 * 109.46722 * 334.97017 * 20 18 16 24 24 C 1.47430 * 108.69985 * 1.09048 * 15 14 13 25 25 C 1.53032 * 109.52948 * 298.64344 * 10 9 8 26 26 C 1.46932 * 120.63095 * 352.87148 * 7 5 4 27 27 C 1.36093 * 107.10282 * 0.26336 * 4 3 2 28 28 C 1.50690 * 126.52577 * 179.73446 * 27 4 3 29 29 O 1.34048 * 125.37814 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46681 * 90.00274 * 1 2 3 31 31 H 1.09004 * 109.47315 * 209.99799 * 1 2 3 32 32 H 1.09000 * 109.47521 * 330.00669 * 1 2 3 33 33 H 1.08998 * 109.58440 * 6.58747 * 8 7 5 34 34 H 1.08999 * 109.70392 * 246.23258 * 8 7 5 35 35 H 1.08997 * 109.50040 * 294.68932 * 9 8 7 36 36 H 1.08997 * 109.52426 * 174.60974 * 9 8 7 37 37 H 1.09002 * 109.45922 * 58.65675 * 10 9 8 38 38 H 1.08993 * 110.71779 * 324.78302 * 13 11 10 39 39 H 1.08992 * 110.71847 * 88.05911 * 13 11 10 40 40 H 1.09006 * 109.84685 * 262.73023 * 14 13 11 41 41 H 1.09004 * 110.03203 * 141.65191 * 14 13 11 42 42 H 0.97001 * 119.99831 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.36556 * 217.03278 * 24 15 14 44 44 H 1.09000 * 110.36180 * 94.71443 * 24 15 14 45 45 H 1.09009 * 109.50100 * 181.31284 * 25 10 9 46 46 H 1.09000 * 109.49764 * 301.40818 * 25 10 9 47 47 H 1.09005 * 109.58253 * 353.40985 * 26 7 5 48 48 H 1.08997 * 109.58591 * 113.69512 * 26 7 5 49 49 H 1.09006 * 109.46947 * 89.99916 * 28 27 4 50 50 H 1.08999 * 109.47412 * 210.00109 * 28 27 4 51 51 H 1.09002 * 109.47378 * 330.00125 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7439 1.5438 -0.0013 6 8 5.8569 1.0667 0.1103 7 7 4.5918 2.8771 -0.1257 8 6 5.7413 3.7793 0.0270 9 6 5.8322 4.6762 -1.2117 10 6 4.4950 5.3913 -1.4179 11 6 4.5928 6.3142 -2.6344 12 1 4.8169 5.7452 -3.5367 13 6 5.6473 7.4288 -2.4035 14 6 5.1481 8.5702 -3.3150 15 7 3.7139 8.3473 -3.5489 16 6 2.9009 9.1291 -4.3254 17 1 1.8825 8.8250 -4.5174 18 6 3.3856 10.3122 -4.8656 19 7 4.6622 10.6125 -4.7536 20 14 2.2261 11.4785 -5.7517 21 1 1.7515 12.5191 -4.8045 22 1 2.9421 12.1257 -6.8802 23 1 1.0630 10.7176 -6.2746 24 6 3.2958 7.1430 -2.8083 25 6 3.3919 4.3564 -1.6505 26 6 3.2731 3.4562 -0.4170 27 6 3.5660 -0.6971 -0.0069 28 6 4.7801 -1.5897 -0.0155 29 8 2.2831 -1.0930 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 6.6555 3.1934 0.1217 34 1 5.6089 4.3962 0.9158 35 1 6.0574 4.0664 -2.0866 36 1 6.6216 5.4143 -1.0698 37 1 4.2585 5.9815 -0.5325 38 1 5.6535 7.7436 -1.3600 39 1 6.6372 7.0929 -2.7120 40 1 5.6860 8.5489 -4.2629 41 1 5.2987 9.5322 -2.8251 42 1 5.0008 11.4395 -5.1309 43 1 2.5603 6.5804 -3.3832 44 1 2.8882 7.4184 -1.8356 45 1 2.4439 4.8670 -1.8205 46 1 3.6401 3.7496 -2.5213 47 1 2.5589 2.6570 -0.6152 48 1 2.9358 4.0445 0.4364 49 1 5.0766 -1.8096 1.0101 50 1 4.5438 -2.5195 -0.5328 51 1 5.5982 -1.0855 -0.5300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039160787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:23 Heat of formation + Delta-G solvation = 11.071940 kcal Electronic energy + Delta-G solvation = -31127.500735 eV Core-core repulsion = 27029.134070 eV Total energy + Delta-G solvation = -4098.366665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.82698 -40.18177 -38.36161 -36.59352 -35.37414 -33.61328 -33.44509 -31.74779 -31.13061 -30.46846 -29.17997 -27.77163 -26.70059 -25.13367 -23.94643 -23.49410 -22.88320 -21.82597 -20.74849 -19.82763 -19.43980 -19.32201 -17.66965 -17.42973 -16.78137 -16.33444 -15.96534 -15.29038 -14.92524 -14.59343 -14.45897 -14.34694 -14.13951 -13.92317 -13.85120 -13.69593 -13.48933 -13.17648 -13.12829 -13.01073 -12.83824 -12.63427 -12.35445 -12.12989 -11.92944 -11.70612 -11.62613 -11.33080 -11.10684 -10.92881 -10.84599 -10.71434 -10.55264 -10.43892 -10.10932 -10.04377 -9.76103 -9.72372 -9.53048 -9.45686 -9.14587 -8.61426 -8.52011 -6.74740 -5.66993 -2.98594 0.77071 1.64628 2.10005 2.81877 3.06326 3.42872 3.47787 3.49947 3.50730 4.23505 4.32120 4.54205 4.68276 4.87755 4.91069 4.92629 4.95540 4.97194 5.03930 5.10812 5.14715 5.24609 5.34780 5.44680 5.50288 5.51072 5.57468 5.60828 5.66549 5.73290 5.77798 5.80492 5.92810 5.97395 6.06817 6.11250 6.21107 6.25833 6.34183 6.42438 6.55304 6.60999 6.64782 6.69601 6.85752 7.08366 7.09650 7.33574 7.62757 7.72225 7.89061 7.97115 8.33001 9.28178 9.89345 10.57162 11.45253 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002231 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.397669 B =12547.607032 C =13778.578997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.194 3.806 3 N -0.454 5.454 4 C -0.070 4.070 5 C 0.601 3.399 6 O -0.543 6.543 7 N -0.589 5.589 8 C 0.111 3.889 9 C -0.126 4.126 10 C -0.075 4.075 11 C -0.096 4.096 12 H 0.070 0.930 13 C -0.138 4.138 14 C 0.176 3.824 15 N -0.607 5.607 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.143 3.857 25 C -0.127 4.127 26 C 0.079 3.921 27 C 0.039 3.961 28 C -0.074 4.074 29 O -0.197 6.197 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.034 0.966 44 H 0.017 0.983 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.134 0.866 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -25.267 12.667 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.014 4.014 3 N -0.185 5.185 4 C -0.190 4.190 5 C 0.389 3.611 6 O -0.422 6.422 7 N -0.321 5.321 8 C -0.011 4.011 9 C -0.164 4.164 10 C -0.094 4.094 11 C -0.115 4.115 12 H 0.088 0.912 13 C -0.176 4.176 14 C 0.052 3.948 15 N -0.334 5.334 16 C -0.355 4.355 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.017 3.983 25 C -0.166 4.166 26 C -0.043 4.043 27 C -0.017 4.017 28 C -0.130 4.130 29 O -0.085 6.085 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.151 0.849 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.099 0.901 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.404 -24.693 12.597 27.929 hybrid contribution -0.434 0.277 -0.537 0.744 sum -3.838 -24.417 12.060 27.502 Atomic orbital electron populations 1.20352 0.80747 1.05451 1.05126 1.26427 0.96588 0.78394 1.00017 1.70604 1.00863 1.28612 1.18412 1.21474 0.92086 0.92204 1.13188 1.16750 0.86032 0.81612 0.76743 1.90760 1.24581 1.74778 1.52035 1.47904 1.10862 1.04855 1.68434 1.21714 0.89150 0.91883 0.98347 1.21953 0.98518 0.98459 0.97501 1.21118 0.94007 0.95495 0.98747 1.22351 0.97633 0.95071 0.96482 0.91183 1.22896 0.97416 0.97214 1.00093 1.21143 0.84139 0.93604 0.95960 1.44501 1.05990 1.27891 1.54986 1.19064 0.93851 0.99724 1.22866 0.90557 1.24822 0.96283 0.98148 1.01292 1.69994 1.11552 1.24957 1.50297 0.86141 0.79836 0.81312 0.78774 1.21669 1.21836 1.20673 1.21547 0.93917 0.88160 0.94671 1.21977 0.99965 0.97121 0.97490 1.22690 0.84234 0.99852 0.97515 1.23698 0.83844 0.94446 0.99748 1.20567 0.90125 0.97655 1.04688 1.84324 1.16398 1.37939 1.69811 0.88529 0.89173 0.87678 0.89146 0.91332 0.91679 0.90283 0.91101 0.92640 0.92531 0.94278 0.93906 0.93855 0.94785 0.96550 0.90260 0.92005 0.84883 0.91812 0.88957 0.90148 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.19 1.68 8.30 -13.08 -0.11 1.58 16 3 N -0.45 -5.03 7.81 -7.66 -0.06 -5.09 16 4 C -0.07 -0.85 6.68 -83.02 -0.55 -1.41 16 5 C 0.60 8.18 7.67 -12.53 -0.10 8.08 16 6 O -0.54 -8.14 14.32 5.27 0.08 -8.06 16 7 N -0.59 -7.54 2.97 -174.05 -0.52 -8.06 16 8 C 0.11 1.33 6.44 -3.71 -0.02 1.30 16 9 C -0.13 -1.58 5.20 -26.61 -0.14 -1.72 16 10 C -0.07 -1.03 1.65 -90.58 -0.15 -1.18 16 11 C -0.10 -1.67 2.56 -88.47 -0.23 -1.90 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.14 -2.60 5.43 -24.87 -0.13 -2.73 16 14 C 0.18 4.40 5.38 -3.04 -0.02 4.38 16 15 N -0.61 -15.94 3.39 -170.04 -0.58 -16.52 16 16 C -0.23 -6.48 10.26 -15.06 -0.15 -6.63 16 17 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 18 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 19 N -0.92 -27.69 10.36 55.49 0.58 -27.12 16 20 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.14 2.99 5.80 -2.53 -0.01 2.98 16 25 C -0.13 -1.63 5.21 -26.63 -0.14 -1.77 16 26 C 0.08 0.95 6.11 -3.72 -0.02 0.93 16 27 C 0.04 0.40 7.44 -35.08 -0.26 0.14 16 28 C -0.07 -0.56 9.82 36.00 0.35 -0.20 16 29 O -0.20 -1.86 10.73 6.51 0.07 -1.79 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.95 7.32 -51.93 -0.38 0.57 16 37 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 38 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.04 1.08 7.55 -51.93 -0.39 0.69 16 41 H 0.04 1.18 7.36 -51.93 -0.38 0.80 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 44 H 0.02 0.35 8.03 -51.93 -0.42 -0.07 16 45 H 0.08 1.02 7.32 -51.92 -0.38 0.64 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.13 1.60 4.09 -61.32 -0.25 1.35 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.11 0.98 6.63 -51.93 -0.34 0.63 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -34.17 395.56 -9.26 -43.44 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.36 Total: -1.84 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.40 Total: 1.62 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.58 Total: -56.78 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.15 Total: -9.85 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.17 -9.26 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039160787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.509 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds