Wall clock time and date at job start Wed Apr 1 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29929 * 125.37735 * 2 1 4 4 C 1.36071 * 108.47682 * 180.02562 * 3 2 1 5 5 C 1.47413 * 126.44830 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00194 * 173.89115 * 5 4 3 7 7 N 1.34774 * 120.00313 * 353.88783 * 5 4 3 8 8 C 1.46929 * 120.63567 * 172.88591 * 7 5 4 9 9 C 1.53191 * 108.77631 * 126.37101 * 8 7 5 10 10 C 1.53040 * 109.31099 * 54.63713 * 9 8 7 11 11 C 1.53001 * 109.46098 * 178.62646 * 10 9 8 12 12 H 1.08998 * 110.88173 * 60.72923 * 11 10 9 13 13 C 1.55163 * 111.00312 * 296.85133 * 11 10 9 14 14 C 1.54367 * 102.91686 * 206.45176 * 13 11 10 15 15 N 1.47023 * 107.29337 * 22.13875 * 14 13 11 16 16 C 1.36935 * 125.64907 * 181.05736 * 15 14 13 17 17 H 1.08001 * 119.99509 * 173.68128 * 16 15 14 18 18 C 1.38806 * 120.00182 * 353.68295 * 16 15 14 19 19 N 1.31617 * 120.00230 * 7.30021 * 18 16 15 20 20 Si 1.86809 * 119.99957 * 187.30674 * 18 16 15 21 21 H 1.48502 * 109.47266 * 94.97240 * 20 18 16 22 22 H 1.48501 * 109.46733 * 214.97472 * 20 18 16 23 23 H 1.48498 * 109.46722 * 334.97017 * 20 18 16 24 24 C 1.47430 * 108.69985 * 1.09048 * 15 14 13 25 25 C 1.53032 * 109.52948 * 298.64344 * 10 9 8 26 26 C 1.46932 * 120.63095 * 352.87148 * 7 5 4 27 27 C 1.36093 * 107.10282 * 0.26336 * 4 3 2 28 28 C 1.50690 * 126.52577 * 179.73446 * 27 4 3 29 29 O 1.34048 * 125.37814 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46681 * 90.00274 * 1 2 3 31 31 H 1.09004 * 109.47315 * 209.99799 * 1 2 3 32 32 H 1.09000 * 109.47521 * 330.00669 * 1 2 3 33 33 H 1.08998 * 109.58440 * 6.58747 * 8 7 5 34 34 H 1.08999 * 109.70392 * 246.23258 * 8 7 5 35 35 H 1.08997 * 109.50040 * 294.68932 * 9 8 7 36 36 H 1.08997 * 109.52426 * 174.60974 * 9 8 7 37 37 H 1.09002 * 109.45922 * 58.65675 * 10 9 8 38 38 H 1.08993 * 110.71779 * 324.78302 * 13 11 10 39 39 H 1.08992 * 110.71847 * 88.05911 * 13 11 10 40 40 H 1.09006 * 109.84685 * 262.73023 * 14 13 11 41 41 H 1.09004 * 110.03203 * 141.65191 * 14 13 11 42 42 H 0.97001 * 119.99831 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.36556 * 217.03278 * 24 15 14 44 44 H 1.09000 * 110.36180 * 94.71443 * 24 15 14 45 45 H 1.09009 * 109.50100 * 181.31284 * 25 10 9 46 46 H 1.09000 * 109.49764 * 301.40818 * 25 10 9 47 47 H 1.09005 * 109.58253 * 353.40985 * 26 7 5 48 48 H 1.08997 * 109.58591 * 113.69512 * 26 7 5 49 49 H 1.09006 * 109.46947 * 89.99916 * 28 27 4 50 50 H 1.08999 * 109.47412 * 210.00109 * 28 27 4 51 51 H 1.09002 * 109.47378 * 330.00125 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7439 1.5438 -0.0013 6 8 5.8569 1.0667 0.1103 7 7 4.5918 2.8771 -0.1257 8 6 5.7413 3.7793 0.0270 9 6 5.8322 4.6762 -1.2117 10 6 4.4950 5.3913 -1.4179 11 6 4.5928 6.3142 -2.6344 12 1 4.8169 5.7452 -3.5367 13 6 5.6473 7.4288 -2.4035 14 6 5.1481 8.5702 -3.3150 15 7 3.7139 8.3473 -3.5489 16 6 2.9009 9.1291 -4.3254 17 1 1.8825 8.8250 -4.5174 18 6 3.3856 10.3122 -4.8656 19 7 4.6622 10.6125 -4.7536 20 14 2.2261 11.4785 -5.7517 21 1 1.7515 12.5191 -4.8045 22 1 2.9421 12.1257 -6.8802 23 1 1.0630 10.7176 -6.2746 24 6 3.2958 7.1430 -2.8083 25 6 3.3919 4.3564 -1.6505 26 6 3.2731 3.4562 -0.4170 27 6 3.5660 -0.6971 -0.0069 28 6 4.7801 -1.5897 -0.0155 29 8 2.2831 -1.0930 -0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 6.6555 3.1934 0.1217 34 1 5.6089 4.3962 0.9158 35 1 6.0574 4.0664 -2.0866 36 1 6.6216 5.4143 -1.0698 37 1 4.2585 5.9815 -0.5325 38 1 5.6535 7.7436 -1.3600 39 1 6.6372 7.0929 -2.7120 40 1 5.6860 8.5489 -4.2629 41 1 5.2987 9.5322 -2.8251 42 1 5.0008 11.4395 -5.1309 43 1 2.5603 6.5804 -3.3832 44 1 2.8882 7.4184 -1.8356 45 1 2.4439 4.8670 -1.8205 46 1 3.6401 3.7496 -2.5213 47 1 2.5589 2.6570 -0.6152 48 1 2.9358 4.0445 0.4364 49 1 5.0766 -1.8096 1.0101 50 1 4.5438 -2.5195 -0.5328 51 1 5.5982 -1.0855 -0.5300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039160787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:22 Heat of formation + Delta-G solvation = -10.262515 kcal Electronic energy + Delta-G solvation = -31128.425866 eV Core-core repulsion = 27029.134070 eV Total energy + Delta-G solvation = -4099.291796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.54506 -41.20776 -39.73584 -37.98028 -36.16607 -35.14814 -34.08247 -33.45967 -32.13712 -31.10308 -30.84211 -29.29930 -27.69000 -26.65465 -25.24409 -24.54992 -23.84477 -22.69211 -21.82485 -21.69370 -20.82964 -20.24872 -18.83014 -18.59569 -18.14632 -17.26559 -16.80835 -16.75889 -16.40834 -16.03195 -15.72704 -15.35372 -15.25873 -15.00782 -14.71139 -14.43857 -14.43173 -14.22145 -14.11104 -13.91596 -13.78794 -13.56398 -13.54221 -13.44993 -13.33245 -13.04296 -12.91490 -12.74330 -12.51463 -12.29023 -12.21711 -12.13773 -11.98854 -11.83738 -11.66528 -11.61870 -11.35409 -11.28711 -11.04480 -10.69051 -10.56024 -9.93915 -9.56122 -8.86982 -7.85777 -5.19894 -0.00387 0.90006 1.44131 1.44544 1.47078 1.55872 1.91692 2.14081 2.49735 2.83779 3.32228 3.48081 3.58091 3.65233 3.71503 3.84159 3.96077 4.14426 4.16879 4.20754 4.31173 4.33940 4.42881 4.46470 4.48273 4.55727 4.60564 4.66326 4.68340 4.72427 4.75025 4.83713 4.86273 4.91180 4.96814 5.01606 5.04265 5.06718 5.11496 5.14098 5.20066 5.25271 5.36515 5.43005 5.46815 5.59305 5.69332 5.71897 5.78934 6.21382 6.24599 6.47893 6.99823 7.11071 7.79815 8.45561 9.25462 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002231 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.397669 B =12547.607032 C =13778.578997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.201 3.799 3 N -0.478 5.478 4 C -0.102 4.102 5 C 0.595 3.405 6 O -0.565 6.565 7 N -0.593 5.593 8 C 0.113 3.887 9 C -0.119 4.119 10 C -0.064 4.064 11 C -0.078 4.078 12 H 0.062 0.938 13 C -0.122 4.122 14 C 0.182 3.818 15 N -0.631 5.631 16 C -0.242 4.242 17 H 0.082 0.918 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.139 3.861 25 C -0.121 4.121 26 C 0.086 3.914 27 C 0.041 3.959 28 C -0.072 4.072 29 O -0.197 6.197 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.001 0.999 41 H 0.006 0.994 42 H 0.246 0.754 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.137 0.863 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.104 0.896 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 -27.046 13.701 30.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 N -0.208 5.208 4 C -0.220 4.220 5 C 0.384 3.616 6 O -0.446 6.446 7 N -0.324 5.324 8 C -0.009 4.009 9 C -0.157 4.157 10 C -0.083 4.083 11 C -0.098 4.098 12 H 0.081 0.919 13 C -0.160 4.160 14 C 0.057 3.943 15 N -0.357 5.357 16 C -0.371 4.371 17 H 0.100 0.900 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.806 3.194 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.015 3.985 25 C -0.160 4.160 26 C -0.036 4.036 27 C -0.016 4.016 28 C -0.128 4.128 29 O -0.085 6.085 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.019 0.981 41 H 0.024 0.976 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.154 0.846 48 H 0.089 0.911 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.050 -26.492 13.647 30.225 hybrid contribution 0.006 0.770 -0.860 1.154 sum -5.044 -25.721 12.787 29.164 Atomic orbital electron populations 1.20649 0.77540 1.06929 1.06497 1.27381 0.98000 0.77659 0.97722 1.70515 1.00606 1.29695 1.19994 1.21427 0.92247 0.92851 1.15442 1.17010 0.86310 0.81952 0.76335 1.90735 1.25495 1.75185 1.53161 1.48005 1.11257 1.04871 1.68226 1.21725 0.88944 0.91715 0.98506 1.21876 0.97842 0.98473 0.97508 1.21018 0.95256 0.95095 0.96939 1.22215 0.94931 0.94666 0.97977 0.91931 1.22761 0.98539 0.95204 0.99540 1.20931 0.83866 0.94483 0.95009 1.44856 1.06417 1.29286 1.55182 1.19482 0.94448 1.00304 1.22901 0.90028 1.25710 0.97846 0.99888 1.02784 1.70223 1.13295 1.25060 1.51509 0.85062 0.78084 0.78932 0.77306 1.21350 1.22199 1.19061 1.21743 0.95717 0.86816 0.94256 1.21909 0.99536 0.96812 0.97697 1.22665 0.84067 0.99731 0.97164 1.24105 0.84748 0.94305 0.98396 1.20638 0.88663 0.98002 1.05531 1.84359 1.16119 1.38177 1.69850 0.87021 0.86982 0.86852 0.89555 0.89873 0.92556 0.89376 0.90423 0.90900 0.90551 0.98113 0.97576 0.94477 0.94425 0.95668 0.90144 0.92852 0.84624 0.91078 0.87789 0.87730 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.20 3.11 8.30 88.39 0.73 3.84 16 3 N -0.48 -9.96 7.81 -293.04 -2.29 -12.25 16 4 C -0.10 -2.40 6.68 40.41 0.27 -2.13 16 5 C 0.60 15.92 7.67 86.66 0.66 16.58 16 6 O -0.57 -16.88 14.32 -4.06 -0.06 -16.94 16 7 N -0.59 -14.50 2.97 -822.83 -2.45 -16.95 16 8 C 0.11 2.52 6.44 86.36 0.56 3.08 16 9 C -0.12 -2.75 5.20 30.67 0.16 -2.59 16 10 C -0.06 -1.64 1.65 -10.77 -0.02 -1.66 16 11 C -0.08 -2.64 2.56 -9.40 -0.02 -2.66 16 12 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.12 -4.50 5.43 31.80 0.17 -4.33 16 14 C 0.18 9.36 5.38 86.74 0.47 9.82 16 15 N -0.63 -33.57 3.39 -691.89 -2.35 -35.92 16 16 C -0.24 -14.01 10.26 84.03 0.86 -13.15 16 17 H 0.08 4.50 7.84 -2.91 -0.02 4.47 16 18 C -0.07 -4.08 5.48 84.86 0.46 -3.62 16 19 N -0.95 -59.19 10.36 21.65 0.22 -58.97 16 20 Si 0.98 46.80 29.56 68.60 2.03 48.82 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C 0.14 5.72 5.80 86.85 0.50 6.23 16 25 C -0.12 -2.92 5.21 30.66 0.16 -2.76 16 26 C 0.09 1.92 6.11 86.35 0.53 2.44 16 27 C 0.04 0.80 7.44 25.18 0.19 0.99 16 28 C -0.07 -1.00 9.82 71.23 0.70 -0.30 16 29 O -0.20 -3.36 10.73 0.38 0.00 -3.36 16 30 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 2.03 7.00 -2.39 -0.02 2.02 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.90 7.32 -2.39 -0.02 1.89 16 37 H 0.08 1.95 8.13 -2.39 -0.02 1.93 16 38 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 39 H 0.08 2.52 8.09 -2.39 -0.02 2.50 16 40 H 0.00 0.03 7.55 -2.38 -0.02 0.02 16 41 H 0.01 0.35 7.36 -2.39 -0.02 0.33 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.04 1.51 8.02 -2.39 -0.02 1.49 16 44 H 0.03 1.01 8.03 -2.39 -0.02 0.99 16 45 H 0.08 1.92 7.32 -2.38 -0.02 1.91 16 46 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.14 3.09 4.09 -20.93 -0.09 3.00 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 51 H 0.10 1.67 6.63 -2.39 -0.02 1.65 16 Total: -1.00 -76.29 395.56 3.10 -73.19 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.85 Total: 12.15 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 7.14 Total: 10.23 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -6.86 Total: -124.09 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -76.29 3.10 -73.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039160787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.931 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds