Wall clock time and date at job start Wed Apr 1 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30016 * 127.33384 * 2 1 4 4 O 1.20658 * 112.30513 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15340 * 359.71735 * 4 3 2 6 6 C 1.50703 * 126.82863 * 180.31437 * 5 4 3 7 7 C 1.37362 * 106.34086 * 0.45076 * 5 4 3 8 8 C 1.47400 * 128.56387 * 179.85766 * 7 5 4 9 9 O 1.21609 * 119.99777 * 269.67930 * 8 7 5 10 10 N 1.34770 * 120.00175 * 89.67414 * 8 7 5 11 11 C 1.46930 * 120.63161 * 2.26353 * 10 8 7 12 12 C 1.53191 * 108.77759 * 126.36509 * 11 10 8 13 13 C 1.53036 * 109.31426 * 54.63638 * 12 11 10 14 14 C 1.53045 * 109.53407 * 298.63522 * 13 12 11 15 15 C 1.46932 * 120.63158 * 182.23334 * 10 8 7 16 16 H 1.08992 * 109.58620 * 113.70565 * 15 10 8 17 17 C 1.53002 * 109.58421 * 353.41978 * 15 10 8 18 18 H 1.09003 * 110.63985 * 54.93309 * 17 15 10 19 19 C 1.55160 * 110.71796 * 178.06642 * 17 15 10 20 20 C 1.55385 * 101.36165 * 153.94655 * 19 17 15 21 21 N 1.47424 * 104.87665 * 323.01764 * 20 19 17 22 22 C 1.36939 * 125.64805 * 204.09335 * 21 20 19 23 23 H 1.08001 * 119.99739 * 180.02562 * 22 21 20 24 24 C 1.38814 * 120.00123 * 0.04544 * 22 21 20 25 25 N 1.31625 * 119.99573 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46859 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47344 * 120.00231 * 26 24 22 29 29 H 1.48500 * 109.46701 * 240.00174 * 26 24 22 30 30 C 1.47014 * 108.70144 * 24.13560 * 21 20 19 31 31 H 1.08997 * 109.47457 * 270.03933 * 1 2 3 32 32 H 1.08997 * 109.47749 * 30.04119 * 1 2 3 33 33 H 1.09006 * 109.46976 * 150.04413 * 1 2 3 34 34 H 1.08996 * 109.46690 * 270.16703 * 6 5 4 35 35 H 1.08992 * 109.47432 * 30.16674 * 6 5 4 36 36 H 1.09001 * 109.47188 * 150.17072 * 6 5 4 37 37 H 1.09009 * 109.58306 * 246.15249 * 11 10 8 38 38 H 1.08997 * 109.58491 * 6.42876 * 11 10 8 39 39 H 1.09005 * 109.49246 * 174.58389 * 12 11 10 40 40 H 1.08994 * 109.49661 * 294.64845 * 12 11 10 41 41 H 1.09001 * 109.46249 * 58.65081 * 13 12 11 42 42 H 1.08993 * 109.46350 * 178.61647 * 13 12 11 43 43 H 1.08997 * 109.49961 * 301.40889 * 14 13 12 44 44 H 1.09007 * 109.49677 * 181.31850 * 14 13 12 45 45 H 1.08994 * 111.00641 * 272.12274 * 19 17 15 46 46 H 1.09003 * 110.99933 * 35.97241 * 19 17 15 47 47 H 1.08999 * 110.34305 * 204.16959 * 20 19 17 48 48 H 1.08997 * 110.34683 * 81.87812 * 20 19 17 49 49 H 0.96999 * 119.99160 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.88344 * 239.52031 * 30 21 20 51 51 H 1.09006 * 109.88879 * 118.35762 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 0.0005 5 6 3.6494 -0.6006 0.0070 6 6 4.9712 -1.3244 0.0160 7 6 2.3991 -1.1695 0.0006 8 6 2.0401 -2.5991 0.0009 9 8 1.8925 -3.1892 -1.0522 10 7 1.8756 -3.2524 1.1682 11 6 2.0021 -2.5419 2.4480 12 6 0.7371 -2.7886 3.2761 13 6 0.5082 -4.2955 3.4138 14 6 0.3057 -4.9112 2.0273 15 6 1.5657 -4.6886 1.1851 16 1 2.4006 -5.2374 1.6207 17 6 1.3205 -5.1772 -0.2439 18 1 2.1689 -4.9347 -0.8839 19 6 1.0382 -6.7028 -0.2615 20 6 0.1877 -6.8418 -1.5545 21 7 -0.6478 -5.6277 -1.5904 22 6 -1.8456 -5.5022 -2.2422 23 1 -2.3832 -4.5661 -2.2083 24 6 -2.3688 -6.5781 -2.9462 25 7 -1.7134 -7.7188 -2.9876 26 14 -4.0023 -6.4066 -3.8359 27 1 -4.5329 -5.0340 -3.6362 28 1 -3.8045 -6.6552 -5.2865 29 1 -4.9684 -7.3943 -3.2916 30 6 0.0184 -4.5739 -0.8114 31 1 -0.3634 0.0007 1.0276 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3633 -0.8904 -0.5132 34 1 5.2959 -1.5006 -1.0094 35 1 5.7143 -0.7175 0.5332 36 1 4.8594 -2.2787 0.5308 37 1 2.8716 -2.9155 2.9889 38 1 2.1179 -1.4740 2.2631 39 1 0.8581 -2.3471 4.2654 40 1 -0.1187 -2.3342 2.7771 41 1 1.3752 -4.7525 3.8908 42 1 -0.3776 -4.4741 4.0233 43 1 -0.5463 -4.4373 1.5398 44 1 0.1194 -5.9805 2.1278 45 1 1.9653 -7.2709 -0.3367 46 1 0.4670 -7.0045 0.6165 47 1 -0.4389 -7.7321 -1.5020 48 1 0.8345 -6.8834 -2.4309 49 1 -2.0789 -8.4704 -3.4798 50 1 -0.6278 -4.2521 0.0054 51 1 0.2526 -3.7274 -1.4570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039188270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:03 Heat of formation + Delta-G solvation = 83.144310 kcal Electronic energy + Delta-G solvation = -33271.462076 eV Core-core repulsion = 29176.220704 eV Total energy + Delta-G solvation = -4095.241372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.96677 -40.72371 -37.49180 -36.80774 -34.70041 -33.82206 -32.92167 -32.71287 -30.91165 -28.92310 -28.88114 -28.28895 -27.11667 -25.49922 -24.42999 -24.14309 -22.74758 -21.17072 -20.43207 -20.08845 -19.73844 -18.60184 -17.86378 -17.33136 -16.81568 -16.18154 -15.87470 -15.29853 -15.10051 -14.54483 -14.49662 -14.22408 -14.07469 -13.75941 -13.65875 -13.54924 -13.30807 -13.26852 -13.16414 -12.94474 -12.84551 -12.55757 -12.25941 -11.86226 -11.71064 -11.62856 -11.26220 -11.17320 -11.04198 -10.83636 -10.75989 -10.70541 -10.44966 -10.06011 -9.98667 -9.94097 -9.82924 -9.56484 -9.47386 -9.37492 -8.84848 -8.47821 -8.31722 -6.58096 -5.51207 -2.89842 1.19842 1.82477 2.47442 2.72400 3.09455 3.46375 3.51652 3.54149 3.97264 4.13791 4.49409 4.61343 4.64763 4.72160 4.84668 4.88192 5.04209 5.09873 5.11691 5.20994 5.25954 5.29466 5.36239 5.40971 5.45014 5.51878 5.55161 5.62071 5.65557 5.68311 5.80988 5.84433 5.86285 5.90118 5.97298 6.05976 6.10610 6.20853 6.37124 6.43993 6.53512 6.69103 6.86203 6.94367 7.14255 7.40157 7.43657 7.70233 7.78344 8.00977 8.11930 8.32230 8.53058 9.38107 10.00417 10.68048 11.52648 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003733 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.022970 B = 7498.123238 C = 8257.597594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.055 3.945 3 N -0.359 5.359 4 O 0.093 5.907 5 C 0.006 3.994 6 C -0.075 4.075 7 C -0.236 4.236 8 C 0.577 3.423 9 O -0.479 6.479 10 N -0.598 5.598 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.140 4.140 15 C 0.162 3.838 16 H 0.071 0.929 17 C -0.096 4.096 18 H 0.102 0.898 19 C -0.150 4.150 20 C 0.157 3.843 21 N -0.604 5.604 22 C -0.211 4.211 23 H 0.074 0.926 24 C -0.016 4.016 25 N -0.924 5.924 26 Si 0.909 3.091 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.142 3.858 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.102 0.898 48 H 0.007 0.993 49 H 0.249 0.751 50 H 0.015 0.985 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.795 12.080 15.423 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 N -0.066 5.066 4 O 0.031 5.969 5 C -0.057 4.057 6 C -0.133 4.133 7 C -0.244 4.244 8 C 0.363 3.637 9 O -0.353 6.353 10 N -0.332 5.332 11 C -0.011 4.011 12 C -0.172 4.172 13 C -0.156 4.156 14 C -0.178 4.178 15 C 0.060 3.940 16 H 0.089 0.911 17 C -0.115 4.115 18 H 0.120 0.880 19 C -0.189 4.189 20 C 0.032 3.968 21 N -0.330 5.330 22 C -0.340 4.340 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.574 5.574 26 Si 0.741 3.259 27 H -0.207 1.207 28 H -0.219 1.219 29 H -0.219 1.219 30 C 0.017 3.983 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.025 0.975 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.386 12.969 14.712 23.196 hybrid contribution -0.966 -0.590 -0.455 1.219 sum 11.420 12.379 14.258 22.067 Atomic orbital electron populations 1.20248 0.85144 1.04687 1.03640 1.24779 0.98597 0.86560 1.00751 1.73601 0.89152 1.23418 1.20461 1.84510 1.21520 1.22636 1.68217 1.24566 0.97395 0.83736 1.00012 1.20415 0.88980 0.99059 1.04813 1.22098 0.92623 0.95782 1.13855 1.16957 0.78791 0.83711 0.84196 1.90941 1.46899 1.65629 1.31863 1.47975 1.70239 1.09933 1.05029 1.21648 0.98100 0.97007 0.84363 1.21907 0.98072 0.97494 0.99755 1.21527 1.01687 0.94758 0.97603 1.22191 0.98942 1.02144 0.94536 1.21329 0.96521 0.78291 0.97877 0.91143 1.22709 1.01038 0.95046 0.92684 0.88002 1.23305 0.99497 0.94698 1.01407 1.21908 0.91591 0.92944 0.90346 1.44546 1.20821 1.08740 1.58896 1.19112 0.94517 0.97188 1.23171 0.90850 1.24741 0.99001 0.96154 1.01151 1.69827 1.38325 1.02424 1.46782 0.86058 0.83475 0.77083 0.79321 1.20695 1.21910 1.21930 1.21891 0.89951 0.92573 0.93860 0.89822 0.90003 0.89289 0.88706 0.89354 0.88973 0.91481 0.90515 0.91054 0.91364 0.92115 0.91746 0.89820 0.90218 0.92881 0.92371 0.88028 0.97484 0.94060 0.96736 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.49 36.00 0.38 -0.53 16 2 C 0.06 0.72 7.49 -79.77 -0.60 0.12 16 3 N -0.36 -4.78 12.01 34.78 0.42 -4.37 16 4 O 0.09 1.11 11.06 18.65 0.21 1.32 16 5 C 0.01 0.07 7.55 -34.63 -0.26 -0.19 16 6 C -0.08 -0.53 10.33 36.01 0.37 -0.16 16 7 C -0.24 -3.09 4.22 -102.89 -0.43 -3.53 16 8 C 0.58 8.60 7.05 -12.53 -0.09 8.51 16 9 O -0.48 -9.17 10.06 5.27 0.05 -9.12 16 10 N -0.60 -7.56 2.95 -166.48 -0.49 -8.05 16 11 C 0.11 1.05 6.33 -3.71 -0.02 1.02 16 12 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 13 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 14 C -0.14 -1.88 4.79 -26.61 -0.13 -2.00 16 15 C 0.16 2.27 2.77 -67.60 -0.19 2.08 16 16 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.10 -1.78 2.06 -88.79 -0.18 -1.97 16 18 H 0.10 2.06 5.95 -52.08 -0.31 1.75 16 19 C -0.15 -2.94 6.47 -24.32 -0.16 -3.10 16 20 C 0.16 4.04 5.90 -2.27 -0.01 4.02 16 21 N -0.60 -16.37 3.40 -169.78 -0.58 -16.94 16 22 C -0.21 -6.18 10.27 -15.06 -0.15 -6.33 16 23 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.02 -0.46 5.49 -17.43 -0.10 -0.56 16 25 N -0.92 -27.95 10.09 55.49 0.56 -27.39 16 26 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 C 0.14 3.19 5.55 -3.07 -0.02 3.18 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 37 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 38 H 0.08 0.71 6.27 -51.93 -0.33 0.39 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.34 5.56 -51.93 -0.29 1.05 16 44 H 0.08 1.11 6.52 -51.93 -0.34 0.77 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.09 6.17 -51.93 -0.32 0.77 16 47 H 0.10 2.89 5.87 -51.93 -0.31 2.59 16 48 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.02 0.33 5.20 -51.93 -0.27 0.06 16 51 H 0.05 1.17 5.59 -52.12 -0.29 0.88 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -34.25 386.41 -8.85 -43.11 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.91 Total: -0.17 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.91 Total: -2.11 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.09 Total: -56.75 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.26 Total: -7.81 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.25 -8.85 -43.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039188270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.250 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds