Wall clock time and date at job start Wed Apr 1 2020 04:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30016 * 127.33384 * 2 1 4 4 O 1.20658 * 112.30513 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15340 * 359.71735 * 4 3 2 6 6 C 1.50703 * 126.82863 * 180.31437 * 5 4 3 7 7 C 1.37362 * 106.34086 * 0.45076 * 5 4 3 8 8 C 1.47400 * 128.56387 * 179.85766 * 7 5 4 9 9 O 1.21609 * 119.99777 * 269.67930 * 8 7 5 10 10 N 1.34770 * 120.00175 * 89.67414 * 8 7 5 11 11 C 1.46930 * 120.63161 * 2.26353 * 10 8 7 12 12 C 1.53191 * 108.77759 * 126.36509 * 11 10 8 13 13 C 1.53036 * 109.31426 * 54.63638 * 12 11 10 14 14 C 1.53045 * 109.53407 * 298.63522 * 13 12 11 15 15 C 1.46932 * 120.63158 * 182.23334 * 10 8 7 16 16 H 1.08992 * 109.58620 * 113.70565 * 15 10 8 17 17 C 1.53002 * 109.58421 * 353.41978 * 15 10 8 18 18 H 1.09003 * 110.63985 * 54.93309 * 17 15 10 19 19 C 1.55160 * 110.71796 * 178.06642 * 17 15 10 20 20 C 1.55385 * 101.36165 * 153.94655 * 19 17 15 21 21 N 1.47424 * 104.87665 * 323.01764 * 20 19 17 22 22 C 1.36939 * 125.64805 * 204.09335 * 21 20 19 23 23 H 1.08001 * 119.99739 * 180.02562 * 22 21 20 24 24 C 1.38814 * 120.00123 * 0.04544 * 22 21 20 25 25 N 1.31625 * 119.99573 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46859 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47344 * 120.00231 * 26 24 22 29 29 H 1.48500 * 109.46701 * 240.00174 * 26 24 22 30 30 C 1.47014 * 108.70144 * 24.13560 * 21 20 19 31 31 H 1.08997 * 109.47457 * 270.03933 * 1 2 3 32 32 H 1.08997 * 109.47749 * 30.04119 * 1 2 3 33 33 H 1.09006 * 109.46976 * 150.04413 * 1 2 3 34 34 H 1.08996 * 109.46690 * 270.16703 * 6 5 4 35 35 H 1.08992 * 109.47432 * 30.16674 * 6 5 4 36 36 H 1.09001 * 109.47188 * 150.17072 * 6 5 4 37 37 H 1.09009 * 109.58306 * 246.15249 * 11 10 8 38 38 H 1.08997 * 109.58491 * 6.42876 * 11 10 8 39 39 H 1.09005 * 109.49246 * 174.58389 * 12 11 10 40 40 H 1.08994 * 109.49661 * 294.64845 * 12 11 10 41 41 H 1.09001 * 109.46249 * 58.65081 * 13 12 11 42 42 H 1.08993 * 109.46350 * 178.61647 * 13 12 11 43 43 H 1.08997 * 109.49961 * 301.40889 * 14 13 12 44 44 H 1.09007 * 109.49677 * 181.31850 * 14 13 12 45 45 H 1.08994 * 111.00641 * 272.12274 * 19 17 15 46 46 H 1.09003 * 110.99933 * 35.97241 * 19 17 15 47 47 H 1.08999 * 110.34305 * 204.16959 * 20 19 17 48 48 H 1.08997 * 110.34683 * 81.87812 * 20 19 17 49 49 H 0.96999 * 119.99160 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.88344 * 239.52031 * 30 21 20 51 51 H 1.09006 * 109.88879 * 118.35762 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 0.0005 5 6 3.6494 -0.6006 0.0070 6 6 4.9712 -1.3244 0.0160 7 6 2.3991 -1.1695 0.0006 8 6 2.0401 -2.5991 0.0009 9 8 1.8925 -3.1892 -1.0522 10 7 1.8756 -3.2524 1.1682 11 6 2.0021 -2.5419 2.4480 12 6 0.7371 -2.7886 3.2761 13 6 0.5082 -4.2955 3.4138 14 6 0.3057 -4.9112 2.0273 15 6 1.5657 -4.6886 1.1851 16 1 2.4006 -5.2374 1.6207 17 6 1.3205 -5.1772 -0.2439 18 1 2.1689 -4.9347 -0.8839 19 6 1.0382 -6.7028 -0.2615 20 6 0.1877 -6.8418 -1.5545 21 7 -0.6478 -5.6277 -1.5904 22 6 -1.8456 -5.5022 -2.2422 23 1 -2.3832 -4.5661 -2.2083 24 6 -2.3688 -6.5781 -2.9462 25 7 -1.7134 -7.7188 -2.9876 26 14 -4.0023 -6.4066 -3.8359 27 1 -4.5329 -5.0340 -3.6362 28 1 -3.8045 -6.6552 -5.2865 29 1 -4.9684 -7.3943 -3.2916 30 6 0.0184 -4.5739 -0.8114 31 1 -0.3634 0.0007 1.0276 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3633 -0.8904 -0.5132 34 1 5.2959 -1.5006 -1.0094 35 1 5.7143 -0.7175 0.5332 36 1 4.8594 -2.2787 0.5308 37 1 2.8716 -2.9155 2.9889 38 1 2.1179 -1.4740 2.2631 39 1 0.8581 -2.3471 4.2654 40 1 -0.1187 -2.3342 2.7771 41 1 1.3752 -4.7525 3.8908 42 1 -0.3776 -4.4741 4.0233 43 1 -0.5463 -4.4373 1.5398 44 1 0.1194 -5.9805 2.1278 45 1 1.9653 -7.2709 -0.3367 46 1 0.4670 -7.0045 0.6165 47 1 -0.4389 -7.7321 -1.5020 48 1 0.8345 -6.8834 -2.4309 49 1 -2.0789 -8.4704 -3.4798 50 1 -0.6278 -4.2521 0.0054 51 1 0.2526 -3.7274 -1.4570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039188270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:02 Heat of formation + Delta-G solvation = 62.386666 kcal Electronic energy + Delta-G solvation = -33272.362195 eV Core-core repulsion = 29176.220704 eV Total energy + Delta-G solvation = -4096.141491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.92952 -41.91476 -38.88178 -38.18476 -35.77235 -34.94443 -34.47030 -33.65922 -32.53386 -30.71563 -29.83951 -29.12136 -28.57129 -27.00029 -26.04196 -25.08014 -24.03736 -22.17678 -22.08394 -21.31682 -20.96355 -19.81055 -18.93778 -18.81551 -18.27490 -17.33199 -16.98434 -16.97046 -16.40914 -16.21466 -15.71914 -15.36648 -15.07314 -14.96702 -14.75674 -14.52781 -14.43593 -14.26308 -14.18517 -13.99964 -13.66187 -13.58547 -13.56305 -13.42715 -13.32545 -13.15471 -12.86897 -12.75619 -12.29539 -12.18467 -12.05896 -11.99405 -11.88085 -11.63264 -11.55943 -11.41849 -11.33735 -11.11110 -10.94903 -10.72694 -10.46662 -10.06421 -9.50139 -8.74030 -7.75346 -5.17754 0.30733 0.83172 1.36572 1.42069 1.44215 1.54159 1.78089 2.15380 2.49480 3.02267 3.25682 3.32162 3.51202 3.78010 3.83131 3.89176 3.97162 4.00540 4.07363 4.16918 4.23964 4.29655 4.33129 4.39863 4.47968 4.48988 4.58942 4.60472 4.62571 4.64663 4.76705 4.78702 4.79339 4.86855 4.97137 5.01871 5.07689 5.08821 5.10716 5.20840 5.26697 5.29750 5.34726 5.44080 5.55038 5.61128 5.68984 5.78356 5.86829 6.32738 6.39346 7.13159 7.18870 7.20144 7.84087 8.49955 9.26575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003733 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.022970 B = 7498.123238 C = 8257.597594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.374 5.374 4 O 0.095 5.905 5 C 0.028 3.972 6 C -0.077 4.077 7 C -0.264 4.264 8 C 0.582 3.418 9 O -0.534 6.534 10 N -0.590 5.590 11 C 0.109 3.891 12 C -0.131 4.131 13 C -0.110 4.110 14 C -0.137 4.137 15 C 0.168 3.832 16 H 0.104 0.896 17 C -0.080 4.080 18 H 0.087 0.913 19 C -0.133 4.133 20 C 0.158 3.842 21 N -0.626 5.626 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.069 4.069 25 N -0.949 5.949 26 Si 0.978 3.022 27 H -0.270 1.270 28 H -0.293 1.293 29 H -0.285 1.285 30 C 0.147 3.853 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.071 0.929 48 H -0.029 1.029 49 H 0.246 0.754 50 H 0.018 0.982 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.333 13.074 18.458 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 N -0.082 5.082 4 O 0.034 5.966 5 C -0.035 4.035 6 C -0.133 4.133 7 C -0.271 4.271 8 C 0.369 3.631 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.012 4.012 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.066 3.934 16 H 0.121 0.879 17 C -0.099 4.099 18 H 0.105 0.895 19 C -0.172 4.172 20 C 0.033 3.967 21 N -0.352 5.352 22 C -0.364 4.364 23 H 0.088 0.912 24 C -0.261 4.261 25 N -0.600 5.600 26 Si 0.806 3.194 27 H -0.195 1.195 28 H -0.220 1.220 29 H -0.212 1.212 30 C 0.023 3.977 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.089 0.911 48 H -0.011 1.011 49 H 0.056 0.944 50 H 0.036 0.964 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 13.940 13.998 17.811 26.599 hybrid contribution -1.399 -0.846 -1.412 2.160 sum 12.541 13.153 16.399 24.478 Atomic orbital electron populations 1.20246 0.84671 1.03832 1.04719 1.24991 0.99172 0.86688 1.00704 1.73589 0.89609 1.23658 1.21360 1.84492 1.20985 1.23155 1.67964 1.25184 0.98121 0.83114 0.97088 1.20667 0.87610 0.99426 1.05642 1.21955 0.93773 0.94828 1.16575 1.17180 0.77702 0.84245 0.83951 1.90919 1.49665 1.66925 1.33711 1.48045 1.68843 1.09492 1.05895 1.21937 0.99606 0.97006 0.82671 1.21914 0.97080 0.96904 1.01036 1.21493 1.03114 0.95128 0.95045 1.22116 0.97060 1.01809 0.96531 1.21237 0.98095 0.79422 0.94659 0.87878 1.22484 0.98197 0.93723 0.95489 0.89511 1.23149 0.99599 0.96111 0.98317 1.21722 0.91233 0.91576 0.92205 1.44894 1.20702 1.10465 1.59138 1.19437 0.95728 0.97291 1.23917 0.91181 1.25597 1.02587 0.95832 1.02069 1.70084 1.39742 1.02906 1.47235 0.85011 0.79211 0.77571 0.77587 1.19485 1.21991 1.21215 1.21952 0.91656 0.91068 0.93011 0.87790 0.89179 0.91688 0.88248 0.86161 0.88261 0.88310 0.90267 0.87975 0.93155 0.89668 0.91119 0.93303 0.90736 0.90180 0.90982 0.91062 1.01148 0.94439 0.96408 0.95915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.49 71.23 0.75 -1.04 16 2 C 0.05 1.19 7.49 45.15 0.34 1.53 16 3 N -0.37 -9.63 12.01 -44.78 -0.54 -10.17 16 4 O 0.09 2.11 11.06 76.97 0.85 2.96 16 5 C 0.03 0.57 7.55 25.48 0.19 0.76 16 6 C -0.08 -0.86 10.33 71.24 0.74 -0.12 16 7 C -0.26 -6.73 4.22 -18.74 -0.08 -6.81 16 8 C 0.58 17.24 7.05 86.66 0.61 17.85 16 9 O -0.53 -21.29 10.06 -4.06 -0.04 -21.33 16 10 N -0.59 -13.87 2.95 -798.89 -2.36 -16.23 16 11 C 0.11 1.65 6.33 86.36 0.55 2.20 16 12 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 13 C -0.11 -1.77 5.88 30.62 0.18 -1.59 16 14 C -0.14 -3.44 4.79 30.67 0.15 -3.29 16 15 C 0.17 4.39 2.77 44.97 0.12 4.51 16 16 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.08 -3.00 2.06 -9.61 -0.02 -3.02 16 18 H 0.09 3.59 5.95 -6.59 -0.04 3.55 16 19 C -0.13 -5.22 6.47 32.15 0.21 -5.01 16 20 C 0.16 8.53 5.90 87.02 0.51 9.04 16 21 N -0.63 -35.71 3.40 -691.05 -2.35 -38.05 16 22 C -0.23 -14.35 10.27 84.03 0.86 -13.48 16 23 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 24 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 25 N -0.95 -59.80 10.09 21.65 0.22 -59.58 16 26 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 27 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 29 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 30 C 0.15 6.94 5.55 86.73 0.48 7.42 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 1.03 8.11 -2.39 -0.02 1.01 16 37 H 0.10 0.96 8.14 -2.38 -0.02 0.95 16 38 H 0.08 1.22 6.27 -2.39 -0.01 1.21 16 39 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 1.57 5.56 -2.39 -0.01 1.56 16 44 H 0.07 1.94 6.52 -2.38 -0.02 1.93 16 45 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.07 2.63 6.17 -2.39 -0.01 2.62 16 47 H 0.07 4.28 5.87 -2.39 -0.01 4.26 16 48 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 49 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.02 0.84 5.20 -2.39 -0.01 0.83 16 51 H 0.02 1.23 5.59 -7.20 -0.04 1.19 16 Total: -1.00 -80.65 386.41 4.95 -75.70 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.89 Total: 12.66 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.24 Total: 3.55 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.03 Total: -124.03 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.81 Total: -18.36 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -80.65 4.95 -75.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039188270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.087 kcal (2) G-P(sol) polarization free energy of solvation -80.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds