Wall clock time and date at job start Wed Apr 1 2020 04:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30013 * 127.33974 * 2 1 4 4 O 1.20651 * 112.30424 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15616 * 359.75898 * 4 3 2 6 6 C 1.50701 * 126.82744 * 180.30193 * 5 4 3 7 7 C 1.37362 * 106.34288 * 0.38454 * 5 4 3 8 8 C 1.47390 * 128.56684 * 179.91307 * 7 5 4 9 9 O 1.21609 * 120.00037 * 269.67898 * 8 7 5 10 10 N 1.34776 * 120.00137 * 89.67186 * 8 7 5 11 11 C 1.46921 * 120.62934 * 353.67279 * 10 8 7 12 12 C 1.53199 * 108.77530 * 233.62442 * 11 10 8 13 13 C 1.53041 * 109.33506 * 305.34771 * 12 11 10 14 14 C 1.53102 * 109.50418 * 61.34908 * 13 12 11 15 15 C 1.46923 * 120.63263 * 173.68236 * 10 8 7 16 16 H 1.08998 * 109.59111 * 246.16378 * 15 10 8 17 17 C 1.52995 * 109.58657 * 6.59158 * 15 10 8 18 18 H 1.08999 * 110.64382 * 47.87911 * 17 15 10 19 19 C 1.55157 * 110.72524 * 171.02500 * 17 15 10 20 20 C 1.55117 * 101.49103 * 153.73378 * 19 17 15 21 21 N 1.47426 * 104.93959 * 323.22179 * 20 19 17 22 22 C 1.36938 * 125.64738 * 204.03739 * 21 20 19 23 23 H 1.08005 * 120.00401 * 159.12653 * 22 21 20 24 24 C 1.38815 * 120.00180 * 339.13041 * 22 21 20 25 25 N 1.31618 * 120.00420 * 158.59556 * 24 22 21 26 26 Si 1.86805 * 119.99633 * 338.58699 * 24 22 21 27 27 H 1.48503 * 109.46850 * 84.68425 * 26 24 22 28 28 H 1.48495 * 109.46944 * 204.67920 * 26 24 22 29 29 H 1.48492 * 109.47215 * 324.68230 * 26 24 22 30 30 C 1.47018 * 108.70716 * 24.00418 * 21 20 19 31 31 H 1.09003 * 109.46682 * 270.00289 * 1 2 3 32 32 H 1.09001 * 109.46775 * 29.99518 * 1 2 3 33 33 H 1.08999 * 109.47168 * 150.00093 * 1 2 3 34 34 H 1.08999 * 109.46867 * 270.10023 * 6 5 4 35 35 H 1.09000 * 109.47307 * 30.10336 * 6 5 4 36 36 H 1.09004 * 109.47235 * 150.10370 * 6 5 4 37 37 H 1.09005 * 109.59143 * 113.83607 * 11 10 8 38 38 H 1.08997 * 109.58795 * 353.40738 * 11 10 8 39 39 H 1.08994 * 109.49390 * 65.31057 * 12 11 10 40 40 H 1.09000 * 109.49544 * 185.37963 * 12 11 10 41 41 H 1.09000 * 109.45766 * 181.39973 * 13 12 11 42 42 H 1.09005 * 109.46247 * 301.35659 * 13 12 11 43 43 H 1.09006 * 109.48741 * 178.70157 * 14 13 12 44 44 H 1.08996 * 109.51919 * 58.63068 * 14 13 12 45 45 H 1.09001 * 111.00578 * 271.93988 * 19 17 15 46 46 H 1.08999 * 111.00271 * 35.78566 * 19 17 15 47 47 H 1.09002 * 110.42303 * 204.29564 * 20 19 17 48 48 H 1.09000 * 110.20921 * 82.03980 * 20 19 17 49 49 H 0.96999 * 120.00143 * 179.97438 * 25 24 22 50 50 H 1.08991 * 109.88529 * 239.52600 * 30 21 20 51 51 H 1.09005 * 110.01321 * 118.42268 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0061 6 6 4.9712 -1.3247 0.0146 7 6 2.3991 -1.1697 0.0006 8 6 2.0400 -2.5992 0.0016 9 8 1.8917 -3.1896 -1.0512 10 7 1.8761 -3.2521 1.1692 11 6 2.1855 -2.5929 2.4453 12 6 3.1591 -3.4754 3.2328 13 6 2.5664 -4.8788 3.3786 14 6 2.3674 -5.4963 1.9918 15 6 1.3849 -4.6366 1.1902 16 1 0.4026 -4.6687 1.6615 17 6 1.2879 -5.1682 -0.2411 18 1 2.2028 -4.9539 -0.7935 19 6 0.9897 -6.6908 -0.2424 20 6 0.2769 -6.8650 -1.6090 21 7 -0.5330 -5.6442 -1.7736 22 6 -1.6540 -5.5290 -2.5516 23 1 -2.3629 -4.7362 -2.3634 24 6 -1.8793 -6.4311 -3.5823 25 7 -3.0971 -6.6052 -4.0502 26 14 -0.4538 -7.3980 -4.3054 27 1 -0.2083 -8.6087 -3.4813 28 1 -0.7853 -7.8039 -5.6948 29 1 0.7652 -6.5500 -4.3149 30 6 0.0616 -4.5711 -0.9634 31 1 -0.3633 0.0001 1.0277 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 5.2953 -1.5013 -1.0110 35 1 5.7146 -0.7176 0.5312 36 1 4.8597 -2.2788 0.5298 37 1 1.2685 -2.4583 3.0189 38 1 2.6448 -1.6231 2.2537 39 1 4.1083 -3.5349 2.7003 40 1 3.3225 -3.0450 4.2208 41 1 3.2463 -5.5015 3.9600 42 1 1.6054 -4.8160 3.8892 43 1 1.9668 -6.5046 2.0967 44 1 3.3239 -5.5372 1.4707 45 1 1.9125 -7.2697 -0.2033 46 1 0.3266 -6.9597 0.5799 47 1 -0.3643 -7.7464 -1.5939 48 1 1.0121 -6.9433 -2.4099 49 1 -3.2544 -7.2354 -4.7706 50 1 -0.6626 -4.2147 -0.2311 51 1 0.3745 -3.7481 -1.6061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039188275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:09 Heat of formation + Delta-G solvation = 80.122229 kcal Electronic energy + Delta-G solvation = -33153.715503 eV Core-core repulsion = 29058.343084 eV Total energy + Delta-G solvation = -4095.372419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.99884 -40.79553 -37.57399 -37.22235 -34.74996 -33.90164 -32.96494 -32.86067 -31.39453 -29.15415 -28.90843 -28.48536 -27.81855 -25.70478 -24.39856 -23.96303 -22.74780 -21.29512 -20.59102 -20.43325 -19.70784 -19.25287 -17.95629 -17.55765 -16.86282 -16.27990 -16.09180 -15.31116 -15.20913 -14.89576 -14.56969 -14.27321 -14.15167 -14.01092 -13.69158 -13.59982 -13.40347 -13.30547 -13.27426 -12.98476 -12.83763 -12.63150 -12.55888 -12.49028 -12.13855 -11.65536 -11.51129 -11.36378 -11.26529 -11.19411 -10.92363 -10.85375 -10.59993 -10.35220 -10.18675 -10.00090 -9.96609 -9.80300 -9.53388 -9.30155 -8.93765 -8.57763 -8.45138 -6.77779 -5.82068 -3.10181 1.15886 1.80183 2.39286 2.65773 3.01438 3.44677 3.57492 3.64381 3.93865 4.09983 4.40561 4.50457 4.59473 4.68081 4.71191 4.75805 4.84938 5.00153 5.06489 5.08846 5.09849 5.20389 5.24188 5.28815 5.36317 5.37003 5.42675 5.49200 5.52129 5.55968 5.59258 5.64848 5.68118 5.72611 5.78371 5.85134 5.90743 5.96606 6.00103 6.12742 6.24127 6.29545 6.51276 6.62046 6.76412 6.86867 7.01938 7.24843 7.32630 7.91414 8.09538 8.27350 8.45290 9.00782 9.84288 10.38189 11.34878 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004006 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.462355 B = 6987.735913 C = 8246.517592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.359 5.359 4 O 0.094 5.906 5 C 0.006 3.994 6 C -0.076 4.076 7 C -0.237 4.237 8 C 0.577 3.423 9 O -0.478 6.478 10 N -0.600 5.600 11 C 0.111 3.889 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.129 4.129 15 C 0.160 3.840 16 H 0.076 0.924 17 C -0.093 4.093 18 H 0.103 0.897 19 C -0.132 4.132 20 C 0.115 3.885 21 N -0.610 5.610 22 C -0.232 4.232 23 H 0.088 0.912 24 C 0.019 3.981 25 N -0.915 5.915 26 Si 0.884 3.116 27 H -0.287 1.287 28 H -0.305 1.305 29 H -0.276 1.276 30 C 0.143 3.857 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.021 0.979 49 H 0.261 0.739 50 H 0.013 0.987 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.487 9.725 18.536 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 N -0.066 5.066 4 O 0.032 5.968 5 C -0.058 4.058 6 C -0.133 4.133 7 C -0.244 4.244 8 C 0.363 3.637 9 O -0.352 6.352 10 N -0.334 5.334 11 C -0.013 4.013 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.168 4.168 15 C 0.058 3.942 16 H 0.094 0.906 17 C -0.112 4.112 18 H 0.121 0.879 19 C -0.171 4.171 20 C -0.010 4.010 21 N -0.337 5.337 22 C -0.360 4.360 23 H 0.106 0.894 24 C -0.179 4.179 25 N -0.560 5.560 26 Si 0.714 3.286 27 H -0.214 1.214 28 H -0.233 1.233 29 H -0.202 1.202 30 C 0.019 3.981 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.031 0.969 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.025 10.672 17.786 26.834 hybrid contribution 0.555 -1.272 -0.490 1.472 sum 17.580 9.399 17.296 26.392 Atomic orbital electron populations 1.20260 0.85029 1.04801 1.03674 1.24797 0.98650 0.86473 1.00599 1.73607 0.89123 1.23389 1.20455 1.84513 1.21561 1.22582 1.68156 1.24563 0.97351 0.83810 1.00041 1.20424 0.89047 0.99016 1.04844 1.22071 0.92655 0.95703 1.14004 1.16996 0.78741 0.83797 0.84141 1.90943 1.46566 1.65785 1.31894 1.47900 1.66102 1.14106 1.05302 1.21662 0.99080 0.95964 0.84547 1.21916 0.98868 0.96144 1.00198 1.21548 1.01246 0.95738 0.97252 1.22007 1.00110 0.99435 0.95201 1.21414 0.96519 0.78892 0.97376 0.90632 1.22642 1.01824 0.94001 0.92764 0.87942 1.22930 0.99433 0.95929 0.98822 1.21901 0.93794 0.91567 0.93747 1.44854 1.29727 1.05395 1.53691 1.18647 0.94883 1.14713 1.07742 0.89428 1.25034 0.96306 0.98745 0.97788 1.69835 1.18800 1.37685 1.29643 0.86933 0.84018 0.79862 0.77754 1.21382 1.23271 1.20179 1.21938 0.90177 0.92292 0.93734 0.89785 0.89936 0.89212 0.88689 0.89316 0.89049 0.91316 0.90358 0.91527 0.90822 0.91655 0.91677 0.90196 0.91435 0.91979 0.91647 0.92863 0.96136 0.92930 0.96916 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.49 36.01 0.38 -0.52 16 2 C 0.06 0.73 7.59 -79.76 -0.61 0.13 16 3 N -0.36 -4.71 12.01 34.78 0.42 -4.30 16 4 O 0.09 1.09 11.06 18.65 0.21 1.30 16 5 C 0.01 0.06 7.23 -34.63 -0.25 -0.19 16 6 C -0.08 -0.51 10.33 36.01 0.37 -0.14 16 7 C -0.24 -3.00 4.38 -102.89 -0.45 -3.45 16 8 C 0.58 8.17 7.12 -12.54 -0.09 8.08 16 9 O -0.48 -8.77 9.85 5.27 0.05 -8.72 16 10 N -0.60 -7.01 2.97 -166.49 -0.49 -7.50 16 11 C 0.11 0.93 6.31 -3.71 -0.02 0.90 16 12 C -0.13 -0.88 6.08 -26.61 -0.16 -1.04 16 13 C -0.12 -0.89 5.89 -26.66 -0.16 -1.04 16 14 C -0.13 -1.26 4.89 -26.58 -0.13 -1.39 16 15 C 0.16 2.05 2.47 -67.60 -0.17 1.88 16 16 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 17 C -0.09 -1.60 1.86 -88.78 -0.17 -1.76 16 18 H 0.10 1.89 6.10 -51.92 -0.32 1.58 16 19 C -0.13 -2.29 5.20 -24.47 -0.13 -2.42 16 20 C 0.12 2.67 4.71 -2.42 -0.01 2.66 16 21 N -0.61 -15.90 3.18 -169.94 -0.54 -16.44 16 22 C -0.23 -7.00 10.57 -15.06 -0.16 -7.16 16 23 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 24 C 0.02 0.58 5.44 -17.43 -0.09 0.49 16 25 N -0.91 -29.42 13.97 55.49 0.78 -28.65 16 26 Si 0.88 24.05 24.29 -169.99 -4.13 19.92 16 27 H -0.29 -7.45 6.57 56.52 0.37 -7.08 16 28 H -0.30 -8.32 7.11 56.52 0.40 -7.92 16 29 H -0.28 -7.57 6.68 56.52 0.38 -7.20 16 30 C 0.14 3.12 5.79 -3.06 -0.02 3.10 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.64 6.15 -51.93 -0.32 0.32 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.77 7.21 -51.93 -0.37 0.40 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.06 7.90 -51.93 -0.41 0.65 16 47 H 0.05 1.30 6.86 -51.93 -0.36 0.95 16 48 H 0.02 0.51 5.50 -51.93 -0.29 0.23 16 49 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 50 H 0.01 0.28 7.63 -51.93 -0.40 -0.12 16 51 H 0.07 1.59 5.40 -53.73 -0.29 1.30 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -36.02 386.79 -8.01 -44.02 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -8.26 Total: -3.60 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.86 Total: -1.87 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.16 Total: -56.88 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.26 Total: -7.42 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.13 Total: 19.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.02 -8.01 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039188275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.147 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds