Wall clock time and date at job start Wed Apr 1 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29931 * 125.38272 * 2 1 4 4 C 1.36065 * 108.48058 * 180.19144 * 3 2 1 5 5 C 1.47421 * 126.45144 * 179.86282 * 4 3 2 6 6 O 1.21615 * 119.99931 * 185.86085 * 5 4 3 7 7 N 1.34771 * 119.99786 * 5.85986 * 5 4 3 8 8 C 1.46923 * 120.63221 * 6.06717 * 7 5 4 9 9 C 1.53194 * 108.77605 * 233.63017 * 8 7 5 10 10 C 1.53044 * 109.31377 * 305.36633 * 9 8 7 11 11 C 1.53036 * 109.53640 * 61.36352 * 10 9 8 12 12 C 1.46927 * 120.62733 * 186.09268 * 7 5 4 13 13 H 1.09006 * 109.70098 * 246.22446 * 12 7 5 14 14 C 1.52992 * 109.58840 * 6.57760 * 12 7 5 15 15 H 1.08998 * 110.91710 * 40.99804 * 14 12 7 16 16 C 1.55161 * 111.00817 * 277.09020 * 14 12 7 17 17 C 1.54322 * 102.94325 * 206.42597 * 16 14 12 18 18 N 1.47022 * 107.40554 * 22.11402 * 17 16 14 19 19 C 1.36932 * 125.64950 * 181.10741 * 18 17 16 20 20 H 1.08001 * 119.99912 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00230 * 0.02562 * 19 18 17 22 22 N 1.31625 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47112 * 90.00569 * 23 21 19 25 25 H 1.48506 * 109.47097 * 210.00351 * 23 21 19 26 26 H 1.48494 * 109.47228 * 330.00441 * 23 21 19 27 27 C 1.47744 * 108.52602 * 1.18079 * 18 17 16 28 28 C 1.36095 * 107.09768 * 359.59137 * 4 3 2 29 29 C 1.50704 * 126.52075 * 180.20615 * 28 4 3 30 30 O 1.34050 * 125.37498 * 179.74543 * 2 1 3 31 31 H 1.08999 * 109.47261 * 180.28060 * 1 2 3 32 32 H 1.09001 * 109.46877 * 300.28224 * 1 2 3 33 33 H 1.08995 * 109.46563 * 60.27649 * 1 2 3 34 34 H 1.09006 * 109.58750 * 113.84624 * 8 7 5 35 35 H 1.09000 * 109.70455 * 353.48541 * 8 7 5 36 36 H 1.08999 * 109.50164 * 185.41356 * 9 8 7 37 37 H 1.09005 * 109.52387 * 65.33117 * 9 8 7 38 38 H 1.08998 * 109.45882 * 301.34059 * 10 9 8 39 39 H 1.08997 * 109.45111 * 181.37734 * 10 9 8 40 40 H 1.09002 * 109.49862 * 178.68737 * 11 10 9 41 41 H 1.08996 * 109.49913 * 58.58650 * 11 10 9 42 42 H 1.08996 * 110.71528 * 88.06036 * 16 14 12 43 43 H 1.09001 * 110.71651 * 324.78651 * 16 14 12 44 44 H 1.08991 * 109.88174 * 141.61303 * 17 16 14 45 45 H 1.09003 * 109.87725 * 262.62018 * 17 16 14 46 46 H 0.97002 * 119.99411 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.29409 * 216.94596 * 27 18 17 48 48 H 1.09002 * 110.43228 * 94.62687 * 27 18 17 49 49 H 1.08995 * 109.46898 * 90.00843 * 29 28 4 50 50 H 1.09000 * 109.46716 * 210.00610 * 29 28 4 51 51 H 1.08995 * 109.47167 * 330.00190 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2594 1.0593 0.0000 4 6 3.5612 0.6637 -0.0043 5 6 4.7440 1.5437 -0.0087 6 8 5.8569 1.0660 -0.1199 7 7 4.5920 2.8775 0.1105 8 6 3.2697 3.4593 0.3781 9 6 2.9745 4.5223 -0.6847 10 6 4.1158 5.5415 -0.7120 11 6 5.4225 4.8368 -1.0835 12 6 5.7455 3.7774 -0.0252 13 1 5.9464 4.2638 0.9294 14 6 6.9735 2.9752 -0.4604 15 1 6.7071 2.2340 -1.2139 16 6 7.6617 2.3064 0.7588 17 6 9.1269 2.1666 0.2948 18 7 9.3453 3.1511 -0.7751 19 6 10.5129 3.3318 -1.4672 20 1 10.5724 4.0855 -2.2384 21 6 11.6201 2.5462 -1.1776 22 7 11.5474 1.6272 -0.2381 23 14 13.2131 2.7932 -2.1213 24 1 14.0530 3.7975 -1.4205 25 1 13.9462 1.5041 -2.2011 26 1 12.9068 3.2741 -3.4924 27 6 8.0948 3.9119 -0.9753 28 6 3.5659 -0.6972 0.0023 29 6 4.7801 -1.5899 0.0052 30 8 2.2831 -1.0930 0.0049 31 1 -0.3634 -1.0276 0.0050 32 1 -0.3633 0.5182 0.8875 33 1 -0.3632 0.5095 -0.8924 34 1 3.2662 3.9197 1.3662 35 1 2.5096 2.6792 0.3358 36 1 2.0401 5.0288 -0.4430 37 1 2.8882 4.0465 -1.6617 38 1 4.2172 5.9995 0.2719 39 1 3.8964 6.3125 -1.4505 40 1 6.2305 5.5672 -1.1255 41 1 5.3135 4.3577 -2.0564 42 1 7.2255 1.3278 0.9589 43 1 7.5952 2.9468 1.6383 44 1 9.8003 2.3687 1.1277 45 1 9.3005 1.1603 -0.0863 46 1 12.3210 1.0780 -0.0360 47 1 7.9504 4.1304 -2.0334 48 1 8.1139 4.8349 -0.3956 49 1 5.0739 -1.8002 1.0335 50 1 4.5450 -2.5246 -0.5039 51 1 5.5994 -1.0906 -0.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039236615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:54 Heat of formation + Delta-G solvation = 47.767628 kcal Electronic energy + Delta-G solvation = -32616.758077 eV Core-core repulsion = 28519.982657 eV Total energy + Delta-G solvation = -4096.775420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.65108 -40.43064 -37.36717 -36.79735 -35.19613 -33.35925 -32.71263 -32.68437 -30.90710 -30.30063 -28.93735 -27.14773 -26.59150 -24.86744 -24.27623 -23.40717 -22.69591 -21.67811 -20.66499 -19.57936 -19.48862 -19.31402 -17.33501 -17.12600 -16.61487 -16.00992 -15.89072 -14.99427 -14.82078 -14.49754 -14.42647 -14.22974 -13.96909 -13.76519 -13.69862 -13.59555 -13.40027 -13.07930 -12.94980 -12.90559 -12.82284 -12.47582 -12.03840 -11.95521 -11.87406 -11.57105 -11.45920 -11.40372 -11.01900 -10.81756 -10.78275 -10.72579 -10.52643 -9.98862 -9.90335 -9.76313 -9.53061 -9.45260 -9.40135 -8.92446 -8.74949 -8.38672 -8.21446 -6.61011 -5.53212 -2.85642 1.00127 1.82438 2.27973 3.06664 3.37074 3.49146 3.53406 3.55820 3.65324 4.46857 4.50808 4.64103 4.82812 4.88245 4.93878 4.96098 5.03977 5.10546 5.18178 5.19728 5.33305 5.40986 5.43181 5.47764 5.60882 5.66195 5.68656 5.73379 5.75686 5.86219 5.93002 6.01692 6.05640 6.14702 6.16361 6.18242 6.25790 6.38976 6.46688 6.51029 6.63479 6.76076 6.88643 7.03659 7.19844 7.30988 7.38172 7.64645 7.75461 7.95874 8.07583 8.43408 8.48484 9.40862 10.01666 10.71084 11.57862 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.003224 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.738210 B = 8681.832019 C =10224.008481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.186 3.814 3 N -0.457 5.457 4 C -0.067 4.067 5 C 0.583 3.417 6 O -0.495 6.495 7 N -0.588 5.588 8 C 0.064 3.936 9 C -0.127 4.127 10 C -0.122 4.122 11 C -0.130 4.130 12 C 0.160 3.840 13 H 0.069 0.931 14 C -0.092 4.092 15 H 0.099 0.901 16 C -0.131 4.131 17 C 0.181 3.819 18 N -0.606 5.606 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.138 3.862 28 C 0.040 3.960 29 C -0.080 4.080 30 O -0.198 6.198 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.149 0.851 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.249 0.751 47 H 0.032 0.968 48 H 0.012 0.988 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.884 -1.796 2.202 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.188 5.188 4 C -0.187 4.187 5 C 0.371 3.629 6 O -0.371 6.371 7 N -0.320 5.320 8 C -0.058 4.058 9 C -0.165 4.165 10 C -0.159 4.159 11 C -0.168 4.168 12 C 0.057 3.943 13 H 0.087 0.913 14 C -0.111 4.111 15 H 0.117 0.883 16 C -0.168 4.168 17 C 0.056 3.944 18 N -0.332 5.332 19 C -0.351 4.351 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.011 3.989 28 C -0.016 4.016 29 C -0.136 4.136 30 O -0.086 6.086 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.029 0.971 49 H 0.110 0.890 50 H 0.097 0.903 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.293 -1.558 2.138 26.426 hybrid contribution 1.011 -0.264 -0.396 1.117 sum -25.282 -1.822 1.742 25.407 Atomic orbital electron populations 1.20291 0.81082 1.04870 1.05176 1.26349 0.96469 0.78715 1.00596 1.70240 1.01251 1.28356 1.18936 1.21771 0.91933 0.92462 1.12527 1.16891 0.85962 0.81722 0.78334 1.90911 1.22392 1.75152 1.48648 1.47798 1.09524 1.04789 1.69922 1.22846 0.86206 0.99687 0.97092 1.21824 0.98103 0.96756 0.99837 1.21574 0.95125 0.97723 1.01524 1.22009 0.97565 0.98063 0.99174 1.21357 0.85037 0.89757 0.98152 0.91303 1.22712 0.91440 0.96818 1.00132 0.88332 1.23232 0.98017 1.00514 0.95085 1.21089 0.89383 0.93382 0.90515 1.44564 1.07637 1.39601 1.41375 1.19052 0.87505 1.15254 1.13253 0.90751 1.24786 0.98028 0.98679 0.99268 1.70019 1.29050 1.24297 1.33506 0.86156 0.83814 0.76823 0.79217 1.21801 1.21801 1.20841 1.21699 0.86897 0.93270 0.96988 1.23778 0.83592 0.94583 0.99636 1.20680 0.90341 0.97746 1.04847 1.84322 1.16628 1.37768 1.69855 0.89328 0.88367 0.88364 0.92778 0.83514 0.91412 0.91899 0.92065 0.92063 0.90179 0.91568 0.89454 0.94565 0.94915 0.93901 0.94033 0.94933 0.97057 0.88977 0.90298 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.78 8.30 -13.08 -0.11 1.67 16 3 N -0.46 -5.41 7.73 -7.65 -0.06 -5.47 16 4 C -0.07 -0.94 6.73 -83.02 -0.56 -1.50 16 5 C 0.58 9.35 7.43 -12.52 -0.09 9.25 16 6 O -0.49 -9.10 7.75 5.26 0.04 -9.05 16 7 N -0.59 -8.70 2.97 -166.48 -0.49 -9.19 16 8 C 0.06 0.77 6.32 -3.71 -0.02 0.75 16 9 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 10 C -0.12 -1.34 5.88 -26.69 -0.16 -1.50 16 11 C -0.13 -1.79 4.74 -26.61 -0.13 -1.91 16 12 C 0.16 2.54 2.66 -67.60 -0.18 2.36 16 13 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 14 C -0.09 -1.82 1.96 -88.47 -0.17 -1.99 16 15 H 0.10 2.15 5.96 -51.93 -0.31 1.84 16 16 C -0.13 -2.84 5.69 -24.90 -0.14 -2.98 16 17 C 0.18 4.87 5.37 -3.07 -0.02 4.85 16 18 N -0.61 -16.82 3.40 -169.82 -0.58 -17.40 16 19 C -0.22 -6.60 10.29 -15.06 -0.15 -6.75 16 20 H 0.07 2.13 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -28.68 10.31 55.49 0.57 -28.10 16 23 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.14 3.11 5.33 -2.35 -0.01 3.10 16 28 C 0.04 0.49 7.44 -35.08 -0.26 0.23 16 29 C -0.08 -0.86 9.94 36.01 0.36 -0.51 16 30 O -0.20 -2.18 10.73 6.52 0.07 -2.11 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.15 1.75 3.67 -77.03 -0.28 1.46 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.12 6.94 -51.93 -0.36 0.76 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.89 5.47 -52.43 -0.29 1.60 16 43 H 0.04 0.75 7.78 -51.93 -0.40 0.35 16 44 H 0.03 0.96 7.51 -51.93 -0.39 0.58 16 45 H 0.04 1.28 7.37 -51.93 -0.38 0.90 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 48 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.12 1.56 6.38 -51.93 -0.33 1.23 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -34.98 384.15 -9.37 -44.35 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.16 Total: -0.25 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.53 Total: 3.26 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.56 Total: -60.17 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.11 Total: -11.16 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.98 -9.37 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039236615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.120 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds