Wall clock time and date at job start Wed Apr 1 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29931 * 125.38272 * 2 1 4 4 C 1.36065 * 108.48058 * 180.19144 * 3 2 1 5 5 C 1.47421 * 126.45144 * 179.86282 * 4 3 2 6 6 O 1.21615 * 119.99931 * 185.86085 * 5 4 3 7 7 N 1.34771 * 119.99786 * 5.85986 * 5 4 3 8 8 C 1.46923 * 120.63221 * 6.06717 * 7 5 4 9 9 C 1.53194 * 108.77605 * 233.63017 * 8 7 5 10 10 C 1.53044 * 109.31377 * 305.36633 * 9 8 7 11 11 C 1.53036 * 109.53640 * 61.36352 * 10 9 8 12 12 C 1.46927 * 120.62733 * 186.09268 * 7 5 4 13 13 H 1.09006 * 109.70098 * 246.22446 * 12 7 5 14 14 C 1.52992 * 109.58840 * 6.57760 * 12 7 5 15 15 H 1.08998 * 110.91710 * 40.99804 * 14 12 7 16 16 C 1.55161 * 111.00817 * 277.09020 * 14 12 7 17 17 C 1.54322 * 102.94325 * 206.42597 * 16 14 12 18 18 N 1.47022 * 107.40554 * 22.11402 * 17 16 14 19 19 C 1.36932 * 125.64950 * 181.10741 * 18 17 16 20 20 H 1.08001 * 119.99912 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00230 * 0.02562 * 19 18 17 22 22 N 1.31625 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00201 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47112 * 90.00569 * 23 21 19 25 25 H 1.48506 * 109.47097 * 210.00351 * 23 21 19 26 26 H 1.48494 * 109.47228 * 330.00441 * 23 21 19 27 27 C 1.47744 * 108.52602 * 1.18079 * 18 17 16 28 28 C 1.36095 * 107.09768 * 359.59137 * 4 3 2 29 29 C 1.50704 * 126.52075 * 180.20615 * 28 4 3 30 30 O 1.34050 * 125.37498 * 179.74543 * 2 1 3 31 31 H 1.08999 * 109.47261 * 180.28060 * 1 2 3 32 32 H 1.09001 * 109.46877 * 300.28224 * 1 2 3 33 33 H 1.08995 * 109.46563 * 60.27649 * 1 2 3 34 34 H 1.09006 * 109.58750 * 113.84624 * 8 7 5 35 35 H 1.09000 * 109.70455 * 353.48541 * 8 7 5 36 36 H 1.08999 * 109.50164 * 185.41356 * 9 8 7 37 37 H 1.09005 * 109.52387 * 65.33117 * 9 8 7 38 38 H 1.08998 * 109.45882 * 301.34059 * 10 9 8 39 39 H 1.08997 * 109.45111 * 181.37734 * 10 9 8 40 40 H 1.09002 * 109.49862 * 178.68737 * 11 10 9 41 41 H 1.08996 * 109.49913 * 58.58650 * 11 10 9 42 42 H 1.08996 * 110.71528 * 88.06036 * 16 14 12 43 43 H 1.09001 * 110.71651 * 324.78651 * 16 14 12 44 44 H 1.08991 * 109.88174 * 141.61303 * 17 16 14 45 45 H 1.09003 * 109.87725 * 262.62018 * 17 16 14 46 46 H 0.97002 * 119.99411 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.29409 * 216.94596 * 27 18 17 48 48 H 1.09002 * 110.43228 * 94.62687 * 27 18 17 49 49 H 1.08995 * 109.46898 * 90.00843 * 29 28 4 50 50 H 1.09000 * 109.46716 * 210.00610 * 29 28 4 51 51 H 1.08995 * 109.47167 * 330.00190 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2594 1.0593 0.0000 4 6 3.5612 0.6637 -0.0043 5 6 4.7440 1.5437 -0.0087 6 8 5.8569 1.0660 -0.1199 7 7 4.5920 2.8775 0.1105 8 6 3.2697 3.4593 0.3781 9 6 2.9745 4.5223 -0.6847 10 6 4.1158 5.5415 -0.7120 11 6 5.4225 4.8368 -1.0835 12 6 5.7455 3.7774 -0.0252 13 1 5.9464 4.2638 0.9294 14 6 6.9735 2.9752 -0.4604 15 1 6.7071 2.2340 -1.2139 16 6 7.6617 2.3064 0.7588 17 6 9.1269 2.1666 0.2948 18 7 9.3453 3.1511 -0.7751 19 6 10.5129 3.3318 -1.4672 20 1 10.5724 4.0855 -2.2384 21 6 11.6201 2.5462 -1.1776 22 7 11.5474 1.6272 -0.2381 23 14 13.2131 2.7932 -2.1213 24 1 14.0530 3.7975 -1.4205 25 1 13.9462 1.5041 -2.2011 26 1 12.9068 3.2741 -3.4924 27 6 8.0948 3.9119 -0.9753 28 6 3.5659 -0.6972 0.0023 29 6 4.7801 -1.5899 0.0052 30 8 2.2831 -1.0930 0.0049 31 1 -0.3634 -1.0276 0.0050 32 1 -0.3633 0.5182 0.8875 33 1 -0.3632 0.5095 -0.8924 34 1 3.2662 3.9197 1.3662 35 1 2.5096 2.6792 0.3358 36 1 2.0401 5.0288 -0.4430 37 1 2.8882 4.0465 -1.6617 38 1 4.2172 5.9995 0.2719 39 1 3.8964 6.3125 -1.4505 40 1 6.2305 5.5672 -1.1255 41 1 5.3135 4.3577 -2.0564 42 1 7.2255 1.3278 0.9589 43 1 7.5952 2.9468 1.6383 44 1 9.8003 2.3687 1.1277 45 1 9.3005 1.1603 -0.0863 46 1 12.3210 1.0780 -0.0360 47 1 7.9504 4.1304 -2.0334 48 1 8.1139 4.8349 -0.3956 49 1 5.0739 -1.8002 1.0335 50 1 4.5450 -2.5246 -0.5039 51 1 5.5994 -1.0906 -0.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039236615.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:53 Heat of formation + Delta-G solvation = 25.035494 kcal Electronic energy + Delta-G solvation = -32617.743816 eV Core-core repulsion = 28519.982657 eV Total energy + Delta-G solvation = -4097.761160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.51686 -41.70055 -38.84431 -38.27523 -36.16786 -34.80397 -33.98640 -33.74171 -32.54652 -30.92363 -30.86214 -28.72350 -27.78700 -26.49116 -25.57198 -24.58732 -23.77916 -22.74070 -22.06713 -21.21536 -21.04687 -20.38759 -18.83139 -18.30601 -18.02614 -17.29842 -16.93167 -16.60644 -16.27155 -16.08131 -15.64618 -15.29960 -15.19974 -14.99884 -14.72034 -14.56346 -14.30119 -14.19748 -14.11107 -13.91823 -13.76670 -13.64249 -13.54658 -13.38209 -13.30621 -13.09158 -12.83015 -12.74405 -12.51253 -12.33859 -12.19544 -11.99410 -11.97081 -11.77884 -11.71498 -11.48015 -11.20693 -11.15892 -10.73385 -10.64972 -10.17392 -9.77176 -9.42485 -8.86280 -7.81946 -5.18630 0.05293 0.95153 1.42896 1.46489 1.46877 1.55385 1.96580 2.23936 2.50125 2.86887 3.33676 3.48786 3.61513 3.67220 3.84587 3.90632 4.05619 4.14999 4.15379 4.23957 4.29239 4.33277 4.38681 4.45543 4.55375 4.58784 4.65200 4.68054 4.71532 4.73043 4.76492 4.84948 4.89299 4.96199 5.00717 5.06245 5.09376 5.12403 5.16019 5.20195 5.25786 5.30539 5.45385 5.47034 5.51695 5.61182 5.77814 5.82776 5.91097 6.21069 6.35376 6.56928 7.11143 7.23572 7.79570 8.47604 9.28423 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.003224 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.738210 B = 8681.832019 C =10224.008481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.200 3.800 3 N -0.472 5.472 4 C -0.091 4.091 5 C 0.576 3.424 6 O -0.532 6.532 7 N -0.588 5.588 8 C 0.060 3.940 9 C -0.120 4.120 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.165 3.835 13 H 0.073 0.927 14 C -0.070 4.070 15 H 0.077 0.923 16 C -0.114 4.114 17 C 0.194 3.806 18 N -0.629 5.629 19 C -0.242 4.242 20 H 0.083 0.917 21 C -0.073 4.073 22 N -0.953 5.953 23 Si 0.983 3.017 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.137 3.863 28 C 0.036 3.964 29 C -0.077 4.077 30 O -0.198 6.198 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.090 0.910 43 H 0.046 0.954 44 H -0.004 1.004 45 H 0.001 0.999 46 H 0.245 0.755 47 H 0.037 0.963 48 H 0.025 0.975 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.056 -0.558 1.835 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.008 4.008 3 N -0.203 5.203 4 C -0.209 4.209 5 C 0.365 3.635 6 O -0.411 6.411 7 N -0.319 5.319 8 C -0.061 4.061 9 C -0.158 4.158 10 C -0.153 4.153 11 C -0.164 4.164 12 C 0.062 3.938 13 H 0.091 0.909 14 C -0.090 4.090 15 H 0.095 0.905 16 C -0.152 4.152 17 C 0.069 3.931 18 N -0.355 5.355 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.265 4.265 22 N -0.603 5.603 23 Si 0.811 3.189 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.192 1.192 27 C 0.011 3.989 28 C -0.020 4.020 29 C -0.133 4.133 30 O -0.086 6.086 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.169 0.831 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.015 0.985 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.043 0.957 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -29.521 -0.263 1.764 29.574 hybrid contribution 1.875 -0.687 -0.279 2.016 sum -27.646 -0.950 1.486 27.702 Atomic orbital electron populations 1.20660 0.77165 1.06764 1.06770 1.27512 0.98106 0.77697 0.97458 1.70172 1.00333 1.29220 1.20565 1.21515 0.92246 0.92685 1.14454 1.17244 0.86326 0.82284 0.77633 1.90873 1.23970 1.75790 1.50495 1.47912 1.10271 1.04390 1.69359 1.23078 0.84601 1.00320 0.98142 1.21795 0.99182 0.96151 0.98708 1.21555 0.93351 0.97890 1.02553 1.21966 0.99450 0.97319 0.97712 1.21184 0.83912 0.89754 0.98958 0.90922 1.22440 0.92395 0.95816 0.98331 0.90457 1.23070 0.94574 1.01375 0.96162 1.20788 0.91942 0.91226 0.89130 1.44911 1.08934 1.40282 1.41392 1.19505 0.88567 1.15450 1.13610 0.89953 1.25757 1.01762 0.98531 1.00471 1.70271 1.29711 1.25187 1.35096 0.85006 0.78987 0.76541 0.78363 1.21046 1.22025 1.19217 1.21879 0.85762 0.93664 0.97567 1.23907 0.84500 0.94380 0.99245 1.20622 0.89239 0.98196 1.05252 1.84357 1.16022 1.38285 1.69966 0.87333 0.86477 0.86723 0.91826 0.83091 0.88504 0.92932 0.91084 0.90292 0.90344 0.92706 0.89225 0.93488 0.98538 0.98085 0.94575 0.94510 0.95687 0.88222 0.87980 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 71.24 0.75 0.47 16 2 C 0.20 3.36 8.30 88.39 0.73 4.09 16 3 N -0.47 -10.44 7.73 -293.03 -2.26 -12.71 16 4 C -0.09 -2.51 6.73 40.41 0.27 -2.24 16 5 C 0.58 18.83 7.43 86.66 0.64 19.48 16 6 O -0.53 -20.63 7.75 -4.08 -0.03 -20.66 16 7 N -0.59 -17.05 2.97 -798.87 -2.37 -19.42 16 8 C 0.06 1.31 6.32 86.36 0.55 1.85 16 9 C -0.12 -2.17 6.08 30.67 0.19 -1.98 16 10 C -0.12 -2.20 5.88 30.62 0.18 -2.02 16 11 C -0.13 -3.30 4.74 30.67 0.15 -3.15 16 12 C 0.17 5.15 2.66 44.97 0.12 5.27 16 13 H 0.07 2.24 7.76 -2.38 -0.02 2.22 16 14 C -0.07 -2.87 1.96 -9.40 -0.02 -2.89 16 15 H 0.08 3.54 5.96 -2.47 -0.01 3.52 16 16 C -0.11 -5.18 5.69 31.78 0.18 -5.00 16 17 C 0.19 11.13 5.37 86.73 0.47 11.59 16 18 N -0.63 -36.29 3.40 -691.18 -2.35 -38.64 16 19 C -0.24 -14.79 10.29 84.03 0.86 -13.93 16 20 H 0.08 4.76 7.83 -2.91 -0.02 4.73 16 21 C -0.07 -4.47 5.49 84.86 0.47 -4.01 16 22 N -0.95 -62.17 10.31 21.65 0.22 -61.94 16 23 Si 0.98 48.74 29.55 68.60 2.03 50.77 16 24 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 C 0.14 6.26 5.33 86.79 0.46 6.72 16 28 C 0.04 0.89 7.44 25.19 0.19 1.08 16 29 C -0.08 -1.71 9.94 71.24 0.71 -1.00 16 30 O -0.20 -4.04 10.73 0.43 0.00 -4.04 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.12 0.22 8.14 -2.39 -0.02 0.21 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.15 3.28 3.67 -51.95 -0.19 3.09 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 2.07 6.94 -2.39 -0.02 2.05 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 4.09 5.47 -10.39 -0.06 4.04 16 43 H 0.05 2.00 7.78 -2.39 -0.02 1.98 16 44 H 0.00 -0.23 7.51 -2.39 -0.02 -0.24 16 45 H 0.00 0.06 7.37 -2.39 -0.02 0.04 16 46 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 48 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 49 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.09 2.63 6.38 -2.39 -0.02 2.62 16 Total: -1.00 -80.45 384.15 2.83 -77.62 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.71 Total: 14.69 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.89 Total: 14.34 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -6.77 Total: -132.72 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.03 Total: -24.69 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Total: -80.45 2.83 -77.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039236615.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.653 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds