Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29935 * 125.38036 * 2 1 4 4 C 1.36069 * 108.47427 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44412 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99932 * 186.59947 * 5 4 3 7 7 N 1.34778 * 120.00052 * 6.60066 * 5 4 3 8 8 C 1.46919 * 120.63220 * 7.01614 * 7 5 4 9 9 C 1.53197 * 108.77725 * 233.58891 * 8 7 5 10 10 C 1.53045 * 109.30852 * 305.36231 * 9 8 7 11 11 C 1.53069 * 109.65774 * 61.29925 * 10 9 8 12 12 C 1.46933 * 120.62878 * 186.99286 * 7 5 4 13 13 H 1.08996 * 109.58491 * 246.34252 * 12 7 5 14 14 C 1.52996 * 109.58703 * 6.62689 * 12 7 5 15 15 H 1.08997 * 110.64248 * 303.42734 * 14 12 7 16 16 C 1.55163 * 110.71997 * 66.56841 * 14 12 7 17 17 C 1.54907 * 101.57918 * 153.86423 * 16 14 12 18 18 N 1.47422 * 104.83566 * 322.99371 * 17 16 14 19 19 C 1.36935 * 125.64737 * 204.09924 * 18 17 16 20 20 H 1.07993 * 120.00257 * 354.98373 * 19 18 17 21 21 C 1.38823 * 119.99928 * 174.98855 * 19 18 17 22 22 N 1.31620 * 119.99816 * 5.08795 * 21 19 18 23 23 Si 1.86793 * 119.99952 * 185.09378 * 21 19 18 24 24 H 1.48505 * 109.47510 * 94.99670 * 23 21 19 25 25 H 1.48501 * 109.47016 * 214.99506 * 23 21 19 26 26 H 1.48501 * 109.47394 * 334.99801 * 23 21 19 27 27 C 1.47024 * 108.70487 * 24.12397 * 18 17 16 28 28 C 1.36091 * 107.10614 * 0.25737 * 4 3 2 29 29 C 1.50700 * 126.52350 * 179.74218 * 28 4 3 30 30 O 1.34054 * 125.37713 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46356 * 90.00612 * 1 2 3 32 32 H 1.09002 * 109.47301 * 210.00419 * 1 2 3 33 33 H 1.08998 * 109.47118 * 330.01104 * 1 2 3 34 34 H 1.09007 * 109.58835 * 353.37361 * 8 7 5 35 35 H 1.09005 * 109.59130 * 113.65267 * 8 7 5 36 36 H 1.08998 * 109.49780 * 65.31734 * 9 8 7 37 37 H 1.08997 * 109.49576 * 185.38339 * 9 8 7 38 38 H 1.08995 * 109.45547 * 181.38748 * 10 9 8 39 39 H 1.09000 * 109.46019 * 301.35697 * 10 9 8 40 40 H 1.09007 * 109.62104 * 178.82802 * 11 10 9 41 41 H 1.09004 * 109.39155 * 58.72141 * 11 10 9 42 42 H 1.09000 * 111.00206 * 35.79238 * 16 14 12 43 43 H 1.08998 * 111.00240 * 271.93984 * 16 14 12 44 44 H 1.09003 * 110.36553 * 81.83039 * 17 16 14 45 45 H 1.09001 * 110.36574 * 204.15105 * 17 16 14 46 46 H 0.96996 * 119.99809 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88739 * 239.53279 * 27 18 17 48 48 H 1.09002 * 109.88062 * 118.36297 * 27 18 17 49 49 H 1.08993 * 109.46931 * 89.99828 * 29 28 4 50 50 H 1.08999 * 109.46789 * 210.00113 * 29 28 4 51 51 H 1.09003 * 109.47038 * 329.99476 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6637 0.0006 5 6 4.7440 1.5437 0.0003 6 8 5.8563 1.0672 -0.1202 7 7 4.5925 2.8763 0.1335 8 6 3.2751 3.4537 0.4328 9 6 2.9571 4.5256 -0.6145 10 6 4.0963 5.5468 -0.6556 11 6 5.3983 4.8497 -1.0578 12 6 5.7419 3.7791 -0.0174 13 1 5.9604 4.2553 0.9384 14 6 6.9618 2.9827 -0.4844 15 1 7.1789 2.1704 0.2091 16 6 6.7435 2.4354 -1.9198 17 6 8.2010 2.3072 -2.4287 18 7 8.9046 3.4689 -1.8555 19 6 10.0391 4.0445 -2.3620 20 1 10.5388 3.5987 -3.2093 21 6 10.5471 5.2011 -1.7864 22 7 9.9979 5.6886 -0.6941 23 14 12.0100 6.0656 -2.5621 24 1 11.5279 7.1473 -3.4581 25 1 12.8625 6.6497 -1.4955 26 1 12.8028 5.0874 -3.3493 27 6 8.1867 3.9069 -0.6494 28 6 3.5660 -0.6972 -0.0049 29 6 4.7801 -1.5898 -0.0119 30 8 2.2831 -1.0930 0.0005 31 1 -0.3632 -0.0001 -1.0278 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8901 0.5137 34 1 2.5166 2.6717 0.3971 35 1 3.2901 3.9031 1.4258 36 1 2.8521 4.0580 -1.5934 37 1 2.0268 5.0282 -0.3497 38 1 3.8610 6.3241 -1.3825 39 1 4.2170 5.9960 0.3302 40 1 6.2050 5.5812 -1.1071 41 1 5.2714 4.3811 -2.0338 42 1 6.1788 3.1436 -2.5262 43 1 6.2508 1.4634 -1.8966 44 1 8.6473 1.3792 -2.0713 45 1 8.2274 2.3471 -3.5177 46 1 10.3526 6.4969 -0.2921 47 1 7.8585 4.9396 -0.7677 48 1 8.8368 3.8197 0.2211 49 1 5.0757 -1.8091 1.0140 50 1 4.5442 -2.5200 -0.5289 51 1 5.5986 -1.0859 -0.5262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039236617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = 50.749961 kcal Electronic energy + Delta-G solvation = -32932.764719 eV Core-core repulsion = 28836.118623 eV Total energy + Delta-G solvation = -4096.646097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.65613 -40.46142 -37.37419 -36.70882 -35.17796 -33.35204 -32.63476 -32.54975 -31.06663 -30.32047 -28.39455 -27.38081 -26.64124 -24.82173 -24.13729 -23.54089 -22.71540 -21.60071 -20.74363 -20.05438 -19.36708 -18.67434 -17.26615 -17.03042 -16.67415 -15.92854 -15.54067 -15.25748 -14.79340 -14.46485 -14.41553 -14.25086 -14.11151 -13.77392 -13.61523 -13.52459 -13.42232 -13.01786 -12.95667 -12.90266 -12.77083 -12.42603 -12.22398 -11.83865 -11.70412 -11.58918 -11.29836 -11.17391 -10.92917 -10.87687 -10.76073 -10.45483 -10.33995 -10.15640 -9.90914 -9.72761 -9.64205 -9.49743 -9.43408 -8.86388 -8.62698 -8.34828 -8.10511 -6.61852 -5.56927 -2.87792 0.98605 1.83334 2.26766 3.12766 3.39327 3.47692 3.52773 3.54763 3.66880 4.45077 4.54177 4.63047 4.82553 4.95547 5.02242 5.10857 5.12493 5.15031 5.22747 5.32690 5.34089 5.39829 5.52080 5.61800 5.62330 5.69396 5.70398 5.75413 5.89484 5.93959 5.97579 6.10376 6.15371 6.20198 6.20971 6.34755 6.42017 6.45808 6.52499 6.69521 6.81672 6.83782 7.00388 7.03097 7.06495 7.30422 7.38589 7.70885 7.74803 7.87743 8.01308 8.43359 8.44005 9.38595 9.99721 10.69468 11.54577 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.003184 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.056301 B = 8790.847132 C = 9904.843377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.455 5.455 4 C -0.066 4.066 5 C 0.591 3.409 6 O -0.507 6.507 7 N -0.585 5.585 8 C 0.066 3.934 9 C -0.125 4.125 10 C -0.122 4.122 11 C -0.134 4.134 12 C 0.163 3.837 13 H 0.071 0.929 14 C -0.115 4.115 15 H 0.106 0.894 16 C -0.125 4.125 17 C 0.136 3.864 18 N -0.606 5.606 19 C -0.220 4.220 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.907 3.093 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.180 3.820 28 C 0.036 3.964 29 C -0.078 4.078 30 O -0.199 6.199 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.015 0.985 45 H 0.030 0.970 46 H 0.249 0.751 47 H 0.051 0.949 48 H 0.032 0.968 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.179 -11.099 3.743 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.021 4.021 3 N -0.186 5.186 4 C -0.186 4.186 5 C 0.378 3.622 6 O -0.384 6.384 7 N -0.316 5.316 8 C -0.057 4.057 9 C -0.164 4.164 10 C -0.159 4.159 11 C -0.172 4.172 12 C 0.061 3.939 13 H 0.089 0.911 14 C -0.134 4.134 15 H 0.124 0.876 16 C -0.163 4.163 17 C 0.010 3.990 18 N -0.332 5.332 19 C -0.349 4.349 20 H 0.093 0.907 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C 0.055 3.945 28 C -0.019 4.019 29 C -0.134 4.134 30 O -0.086 6.086 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.161 0.839 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.033 0.967 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.670 -10.571 3.729 25.290 hybrid contribution 0.912 0.150 -0.375 0.997 sum -21.758 -10.422 3.355 24.357 Atomic orbital electron populations 1.20303 0.81060 1.05243 1.04872 1.26366 0.96481 0.78678 1.00561 1.70334 1.01229 1.28333 1.18682 1.21814 0.92043 0.92447 1.12283 1.16776 0.85813 0.81791 0.77821 1.90800 1.23031 1.75085 1.49515 1.47888 1.10230 1.04890 1.68638 1.22810 0.86173 0.99619 0.97104 1.21808 0.98124 0.96707 0.99733 1.21581 0.95248 0.97676 1.01437 1.22122 0.97552 0.98277 0.99238 1.21252 0.84638 0.89643 0.98385 0.91134 1.23043 0.93923 0.98523 0.97944 0.87632 1.23127 0.97226 1.00061 0.95867 1.21528 0.90981 0.90788 0.95667 1.44474 1.28316 1.32632 1.27754 1.19090 1.00278 1.04596 1.10932 0.90717 1.24777 0.99665 0.98289 0.97968 1.69988 1.42965 1.23463 1.20571 0.86155 0.82089 0.79748 0.78168 1.21844 1.21904 1.20805 1.21293 0.88873 0.95124 0.89258 1.23735 0.83617 0.94555 1.00022 1.20647 0.90418 0.97728 1.04651 1.84308 1.16592 1.37802 1.69938 0.88773 0.89297 0.87918 0.83850 0.92721 0.91979 0.91550 0.92181 0.92184 0.89293 0.91145 0.92757 0.91096 0.96734 0.95220 0.94047 0.93122 0.94983 0.89156 0.90333 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.12 16 2 C 0.19 1.79 8.30 -13.08 -0.11 1.68 16 3 N -0.45 -5.48 7.75 -7.65 -0.06 -5.54 16 4 C -0.07 -0.92 6.72 -83.02 -0.56 -1.47 16 5 C 0.59 9.50 6.79 -12.52 -0.08 9.42 16 6 O -0.51 -9.06 8.38 5.27 0.04 -9.01 16 7 N -0.59 -9.14 2.95 -166.48 -0.49 -9.63 16 8 C 0.07 0.85 6.32 -3.71 -0.02 0.83 16 9 C -0.13 -1.52 6.09 -26.61 -0.16 -1.68 16 10 C -0.12 -1.65 5.88 -26.67 -0.16 -1.81 16 11 C -0.13 -2.28 4.79 -26.60 -0.13 -2.40 16 12 C 0.16 2.88 2.75 -67.60 -0.19 2.69 16 13 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 14 C -0.12 -2.40 2.07 -88.78 -0.18 -2.58 16 15 H 0.11 2.33 5.79 -52.62 -0.30 2.03 16 16 C -0.12 -2.55 5.37 -24.58 -0.13 -2.68 16 17 C 0.14 3.18 7.23 -2.53 -0.02 3.17 16 18 N -0.61 -16.57 3.39 -170.07 -0.58 -17.15 16 19 C -0.22 -6.47 10.27 -15.06 -0.15 -6.63 16 20 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.33 5.48 -17.43 -0.10 -0.43 16 22 N -0.92 -27.86 10.34 55.49 0.57 -27.29 16 23 Si 0.91 22.94 29.56 -169.99 -5.02 17.92 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.18 4.60 4.79 -3.06 -0.01 4.58 16 28 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 29 C -0.08 -0.77 9.95 36.01 0.36 -0.41 16 30 O -0.20 -2.14 10.73 6.51 0.07 -2.07 16 31 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.15 1.80 3.70 -75.30 -0.28 1.52 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.73 6.40 -51.93 -0.33 1.40 16 41 H 0.07 1.26 5.70 -51.93 -0.30 0.97 16 42 H 0.05 1.11 5.48 -51.93 -0.28 0.83 16 43 H 0.07 1.39 5.58 -51.93 -0.29 1.10 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.05 1.38 5.03 -51.93 -0.26 1.11 16 48 H 0.03 0.92 7.65 -51.93 -0.40 0.52 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.12 1.39 6.37 -51.93 -0.33 1.06 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -33.89 378.87 -9.10 -42.99 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.82 Total: 1.48 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.53 Total: 2.58 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.55 Total: -59.60 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.11 Total: -11.08 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.89 -9.10 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039236617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.742 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds