Wall clock time and date at job start Wed Apr 1 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29935 * 125.38036 * 2 1 4 4 C 1.36069 * 108.47427 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44412 * 179.97438 * 4 3 2 6 6 O 1.21606 * 119.99932 * 186.59947 * 5 4 3 7 7 N 1.34778 * 120.00052 * 6.60066 * 5 4 3 8 8 C 1.46919 * 120.63220 * 7.01614 * 7 5 4 9 9 C 1.53197 * 108.77725 * 233.58891 * 8 7 5 10 10 C 1.53045 * 109.30852 * 305.36231 * 9 8 7 11 11 C 1.53069 * 109.65774 * 61.29925 * 10 9 8 12 12 C 1.46933 * 120.62878 * 186.99286 * 7 5 4 13 13 H 1.08996 * 109.58491 * 246.34252 * 12 7 5 14 14 C 1.52996 * 109.58703 * 6.62689 * 12 7 5 15 15 H 1.08997 * 110.64248 * 303.42734 * 14 12 7 16 16 C 1.55163 * 110.71997 * 66.56841 * 14 12 7 17 17 C 1.54907 * 101.57918 * 153.86423 * 16 14 12 18 18 N 1.47422 * 104.83566 * 322.99371 * 17 16 14 19 19 C 1.36935 * 125.64737 * 204.09924 * 18 17 16 20 20 H 1.07993 * 120.00257 * 354.98373 * 19 18 17 21 21 C 1.38823 * 119.99928 * 174.98855 * 19 18 17 22 22 N 1.31620 * 119.99816 * 5.08795 * 21 19 18 23 23 Si 1.86793 * 119.99952 * 185.09378 * 21 19 18 24 24 H 1.48505 * 109.47510 * 94.99670 * 23 21 19 25 25 H 1.48501 * 109.47016 * 214.99506 * 23 21 19 26 26 H 1.48501 * 109.47394 * 334.99801 * 23 21 19 27 27 C 1.47024 * 108.70487 * 24.12397 * 18 17 16 28 28 C 1.36091 * 107.10614 * 0.25737 * 4 3 2 29 29 C 1.50700 * 126.52350 * 179.74218 * 28 4 3 30 30 O 1.34054 * 125.37713 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46356 * 90.00612 * 1 2 3 32 32 H 1.09002 * 109.47301 * 210.00419 * 1 2 3 33 33 H 1.08998 * 109.47118 * 330.01104 * 1 2 3 34 34 H 1.09007 * 109.58835 * 353.37361 * 8 7 5 35 35 H 1.09005 * 109.59130 * 113.65267 * 8 7 5 36 36 H 1.08998 * 109.49780 * 65.31734 * 9 8 7 37 37 H 1.08997 * 109.49576 * 185.38339 * 9 8 7 38 38 H 1.08995 * 109.45547 * 181.38748 * 10 9 8 39 39 H 1.09000 * 109.46019 * 301.35697 * 10 9 8 40 40 H 1.09007 * 109.62104 * 178.82802 * 11 10 9 41 41 H 1.09004 * 109.39155 * 58.72141 * 11 10 9 42 42 H 1.09000 * 111.00206 * 35.79238 * 16 14 12 43 43 H 1.08998 * 111.00240 * 271.93984 * 16 14 12 44 44 H 1.09003 * 110.36553 * 81.83039 * 17 16 14 45 45 H 1.09001 * 110.36574 * 204.15105 * 17 16 14 46 46 H 0.96996 * 119.99809 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88739 * 239.53279 * 27 18 17 48 48 H 1.09002 * 109.88062 * 118.36297 * 27 18 17 49 49 H 1.08993 * 109.46931 * 89.99828 * 29 28 4 50 50 H 1.08999 * 109.46789 * 210.00113 * 29 28 4 51 51 H 1.09003 * 109.47038 * 329.99476 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6637 0.0006 5 6 4.7440 1.5437 0.0003 6 8 5.8563 1.0672 -0.1202 7 7 4.5925 2.8763 0.1335 8 6 3.2751 3.4537 0.4328 9 6 2.9571 4.5256 -0.6145 10 6 4.0963 5.5468 -0.6556 11 6 5.3983 4.8497 -1.0578 12 6 5.7419 3.7791 -0.0174 13 1 5.9604 4.2553 0.9384 14 6 6.9618 2.9827 -0.4844 15 1 7.1789 2.1704 0.2091 16 6 6.7435 2.4354 -1.9198 17 6 8.2010 2.3072 -2.4287 18 7 8.9046 3.4689 -1.8555 19 6 10.0391 4.0445 -2.3620 20 1 10.5388 3.5987 -3.2093 21 6 10.5471 5.2011 -1.7864 22 7 9.9979 5.6886 -0.6941 23 14 12.0100 6.0656 -2.5621 24 1 11.5279 7.1473 -3.4581 25 1 12.8625 6.6497 -1.4955 26 1 12.8028 5.0874 -3.3493 27 6 8.1867 3.9069 -0.6494 28 6 3.5660 -0.6972 -0.0049 29 6 4.7801 -1.5898 -0.0119 30 8 2.2831 -1.0930 0.0005 31 1 -0.3632 -0.0001 -1.0278 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8901 0.5137 34 1 2.5166 2.6717 0.3971 35 1 3.2901 3.9031 1.4258 36 1 2.8521 4.0580 -1.5934 37 1 2.0268 5.0282 -0.3497 38 1 3.8610 6.3241 -1.3825 39 1 4.2170 5.9960 0.3302 40 1 6.2050 5.5812 -1.1071 41 1 5.2714 4.3811 -2.0338 42 1 6.1788 3.1436 -2.5262 43 1 6.2508 1.4634 -1.8966 44 1 8.6473 1.3792 -2.0713 45 1 8.2274 2.3471 -3.5177 46 1 10.3526 6.4969 -0.2921 47 1 7.8585 4.9396 -0.7677 48 1 8.8368 3.8197 0.2211 49 1 5.0757 -1.8091 1.0140 50 1 4.5442 -2.5200 -0.5289 51 1 5.5986 -1.0859 -0.5262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039236617.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:56 Heat of formation + Delta-G solvation = 29.109971 kcal Electronic energy + Delta-G solvation = -32933.703099 eV Core-core repulsion = 28836.118623 eV Total energy + Delta-G solvation = -4097.584477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.50163 -41.81509 -38.90727 -38.20134 -36.14162 -34.73200 -33.97006 -33.74480 -32.78668 -30.90344 -30.25353 -29.09541 -27.77441 -26.42211 -25.58342 -24.77367 -23.80236 -22.65027 -22.25284 -21.61161 -20.80739 -19.96405 -18.85380 -18.20647 -18.02269 -17.17289 -16.89428 -16.66737 -16.36125 -16.11815 -15.69144 -15.35799 -15.21476 -15.12095 -14.67517 -14.57975 -14.46376 -14.27687 -14.15533 -14.10207 -13.57647 -13.51881 -13.42902 -13.30321 -13.16759 -13.03706 -12.84273 -12.73465 -12.44198 -12.32049 -12.29742 -12.03917 -11.88954 -11.77691 -11.65382 -11.61572 -11.28980 -11.18890 -10.73453 -10.65225 -9.97585 -9.77706 -9.41677 -8.84385 -7.82016 -5.17392 0.06938 0.96349 1.43878 1.46537 1.48354 1.55492 1.95807 2.24884 2.50418 2.88432 3.33590 3.49914 3.62755 3.73748 3.84898 3.90873 4.03685 4.08925 4.18734 4.23566 4.30758 4.32625 4.36603 4.42116 4.57782 4.59199 4.62897 4.69623 4.71562 4.73683 4.82770 4.86368 4.88735 4.97478 5.01260 5.07722 5.09155 5.14008 5.14744 5.21732 5.26974 5.30365 5.42705 5.46506 5.50073 5.54673 5.74060 5.80978 5.94758 6.23361 6.38416 6.58907 7.12938 7.19094 7.80245 8.48552 9.27880 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.003184 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.056301 B = 8790.847132 C = 9904.843377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.201 3.799 3 N -0.475 5.475 4 C -0.093 4.093 5 C 0.586 3.414 6 O -0.536 6.536 7 N -0.586 5.586 8 C 0.062 3.938 9 C -0.116 4.116 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.170 3.830 13 H 0.064 0.936 14 C -0.097 4.097 15 H 0.094 0.906 16 C -0.103 4.103 17 C 0.132 3.868 18 N -0.626 5.626 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.066 4.066 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.192 3.808 28 C 0.040 3.960 29 C -0.077 4.077 30 O -0.198 6.198 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.013 0.987 45 H 0.036 0.964 46 H 0.246 0.754 47 H 0.031 0.969 48 H -0.012 1.012 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.165 -11.889 3.302 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.007 4.007 3 N -0.205 5.205 4 C -0.212 4.212 5 C 0.374 3.626 6 O -0.415 6.415 7 N -0.317 5.317 8 C -0.059 4.059 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.164 4.164 12 C 0.067 3.933 13 H 0.082 0.918 14 C -0.117 4.117 15 H 0.112 0.888 16 C -0.141 4.141 17 C 0.007 3.993 18 N -0.353 5.353 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.259 4.259 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.195 1.195 27 C 0.067 3.933 28 C -0.016 4.016 29 C -0.133 4.133 30 O -0.086 6.086 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.172 0.828 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.031 0.969 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.006 0.994 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.689 -11.368 3.278 28.283 hybrid contribution 1.777 0.307 -0.208 1.816 sum -23.912 -11.061 3.071 26.525 Atomic orbital electron populations 1.20661 0.77292 1.07008 1.06504 1.27452 0.98043 0.77681 0.97536 1.70201 1.00502 1.29390 1.20423 1.21465 0.92116 0.92748 1.14833 1.17121 0.86420 0.81969 0.77046 1.90764 1.24359 1.75517 1.50898 1.47928 1.10459 1.04701 1.68609 1.23059 0.84792 1.00274 0.97799 1.21765 0.98630 0.95933 0.99101 1.21556 0.93729 0.98116 1.01985 1.21973 0.98589 0.97363 0.98470 1.20956 0.84478 0.89774 0.98142 0.91813 1.22800 0.93430 0.97229 0.98204 0.88798 1.22974 0.95337 1.00738 0.95056 1.21674 0.92356 0.89355 0.95952 1.44798 1.28421 1.33594 1.28445 1.19470 1.01319 1.05275 1.11284 0.90423 1.25668 1.02777 0.98955 0.98458 1.70217 1.44302 1.23487 1.21636 0.85048 0.78548 0.78487 0.77176 1.21198 1.21977 1.19489 1.21060 0.89751 0.95352 0.87171 1.23976 0.84602 0.94234 0.98832 1.20662 0.89115 0.98159 1.05343 1.84353 1.16055 1.38173 1.69983 0.86988 0.87111 0.86525 0.82775 0.91949 0.92677 0.88317 0.90986 0.91591 0.92600 0.92163 0.92627 0.89685 0.96950 0.94554 0.94455 0.95108 0.99402 0.88134 0.87854 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 71.24 0.75 0.47 16 2 C 0.20 3.26 8.30 88.39 0.73 3.99 16 3 N -0.47 -10.42 7.75 -293.03 -2.27 -12.69 16 4 C -0.09 -2.49 6.72 40.41 0.27 -2.22 16 5 C 0.59 18.88 6.79 86.66 0.59 19.46 16 6 O -0.54 -19.63 8.38 -4.05 -0.03 -19.66 16 7 N -0.59 -18.23 2.95 -798.87 -2.36 -20.59 16 8 C 0.06 1.50 6.32 86.37 0.55 2.05 16 9 C -0.12 -2.53 6.09 30.68 0.19 -2.34 16 10 C -0.12 -3.02 5.88 30.63 0.18 -2.84 16 11 C -0.13 -4.39 4.79 30.68 0.15 -4.24 16 12 C 0.17 6.20 2.75 44.97 0.12 6.33 16 13 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.10 -4.25 2.07 -9.60 -0.02 -4.27 16 15 H 0.09 4.38 5.79 -13.28 -0.08 4.30 16 16 C -0.10 -4.32 5.37 31.99 0.17 -4.15 16 17 C 0.13 6.34 7.23 86.85 0.63 6.96 16 18 N -0.63 -35.77 3.39 -691.98 -2.35 -38.12 16 19 C -0.24 -14.81 10.27 84.04 0.86 -13.94 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.07 -3.95 5.48 84.86 0.47 -3.48 16 22 N -0.95 -59.63 10.34 21.66 0.22 -59.41 16 23 Si 0.98 48.09 29.56 68.60 2.03 50.12 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 27 C 0.19 10.46 4.79 86.73 0.42 10.87 16 28 C 0.04 0.91 7.44 25.19 0.19 1.09 16 29 C -0.08 -1.44 9.95 71.24 0.71 -0.73 16 30 O -0.20 -3.75 10.73 0.37 0.00 -3.74 16 31 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.16 3.53 3.70 -48.53 -0.18 3.35 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 2.31 6.40 -2.38 -0.02 2.29 16 41 H 0.06 2.20 5.70 -2.39 -0.01 2.19 16 42 H 0.06 2.31 5.48 -2.39 -0.01 2.30 16 43 H 0.09 3.37 5.58 -2.39 -0.01 3.36 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 47 H 0.03 1.79 5.03 -2.39 -0.01 1.78 16 48 H -0.01 -0.76 7.65 -2.39 -0.02 -0.78 16 49 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.10 2.31 6.37 -2.39 -0.02 2.29 16 Total: -1.00 -76.94 378.87 2.90 -74.04 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.72 Total: 17.04 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.95 Total: 13.02 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.76 Total: -130.81 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.03 Total: -23.41 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -76.94 2.90 -74.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039236617.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.149 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds