Wall clock time and date at job start Wed Apr 1 2020 04:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30173 * 126.80138 * 2 1 4 4 O 1.20922 * 111.60232 * 180.25808 * 3 2 1 5 5 C 1.34038 * 111.56915 * 359.74145 * 4 3 2 6 6 C 1.50698 * 126.77935 * 179.97438 * 5 4 3 7 7 C 1.35455 * 106.44500 * 0.02562 * 5 4 3 8 8 C 1.50696 * 128.00728 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47116 * 5.30802 * 8 7 5 10 10 C 1.53005 * 109.47032 * 245.31133 * 8 7 5 11 11 C 1.50700 * 109.47376 * 125.30915 * 8 7 5 12 12 O 1.21277 * 119.99835 * 8.36972 * 11 8 7 13 13 N 1.34779 * 120.00097 * 188.36633 * 11 8 7 14 14 C 1.46942 * 120.44097 * 354.50973 * 13 11 8 15 15 C 1.53596 * 108.54554 * 126.03844 * 14 13 11 16 16 H 1.09006 * 110.60202 * 172.13483 * 15 14 13 17 17 C 1.53371 * 108.68082 * 294.33020 * 15 14 13 18 18 C 1.53007 * 109.25765 * 60.26625 * 17 15 14 19 19 C 1.53013 * 109.79166 * 60.58082 * 18 17 15 20 20 C 1.53367 * 109.26870 * 299.42575 * 19 18 17 21 21 H 1.08997 * 111.08695 * 177.80791 * 20 19 18 22 22 C 1.46948 * 120.44373 * 174.78627 * 13 11 8 23 23 N 1.47564 * 107.98409 * 56.35606 * 20 19 18 24 24 C 1.36938 * 121.61235 * 122.25267 * 23 20 19 25 25 H 1.08000 * 119.99707 * 29.16727 * 24 23 20 26 26 C 1.38812 * 120.00136 * 209.16815 * 24 23 20 27 27 N 1.31615 * 120.00040 * 17.49539 * 26 24 23 28 28 Si 1.86802 * 120.00133 * 197.49138 * 26 24 23 29 29 H 1.48501 * 109.46865 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.47120 * 120.00116 * 28 26 24 31 31 H 1.48502 * 109.47033 * 240.00163 * 28 26 24 32 32 H 1.08993 * 109.46544 * 272.94477 * 1 2 3 33 33 H 1.08998 * 109.46960 * 32.94635 * 1 2 3 34 34 H 1.08995 * 109.46874 * 152.94525 * 1 2 3 35 35 H 1.08998 * 109.47620 * 270.00815 * 6 5 4 36 36 H 1.09002 * 109.46905 * 30.00853 * 6 5 4 37 37 H 1.09003 * 109.46829 * 150.00176 * 6 5 4 38 38 H 1.09002 * 109.46494 * 293.19985 * 10 8 7 39 39 H 1.09001 * 109.47135 * 53.20182 * 10 8 7 40 40 H 1.09001 * 109.47124 * 173.20557 * 10 8 7 41 41 H 1.09000 * 109.62599 * 245.74871 * 14 13 11 42 42 H 1.09001 * 109.62930 * 6.31978 * 14 13 11 43 43 H 1.09003 * 109.50422 * 180.20519 * 17 15 14 44 44 H 1.09007 * 109.50835 * 300.28410 * 17 15 14 45 45 H 1.08995 * 109.41657 * 180.67445 * 18 17 15 46 46 H 1.08994 * 109.41756 * 300.54701 * 18 17 15 47 47 H 1.09008 * 109.50262 * 179.49323 * 19 18 17 48 48 H 1.08996 * 109.51159 * 59.37010 * 19 18 17 49 49 H 1.08997 * 109.62408 * 353.68962 * 22 13 11 50 50 H 1.09000 * 109.62301 * 114.26274 * 22 13 11 51 51 H 0.97003 * 120.00524 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0051 5 6 3.6025 -0.6068 -0.0036 6 6 4.9022 -1.3696 -0.0091 7 6 2.3540 -1.1320 0.0027 8 6 1.9591 -2.5863 0.0062 9 1 2.8518 -3.2050 0.0980 10 6 1.2381 -2.9222 -1.3008 11 6 1.0402 -2.8546 1.1701 12 8 0.6144 -1.9317 1.8318 13 7 0.6915 -4.1201 1.4757 14 6 1.1025 -5.2350 0.6113 15 6 1.8306 -6.2780 1.4722 16 1 2.0285 -7.1812 0.8949 17 6 3.1338 -5.6605 1.9945 18 6 2.8048 -4.4295 2.8416 19 6 1.9359 -4.8376 4.0332 20 6 0.6282 -5.4521 3.5190 21 1 0.0019 -5.7892 4.3449 22 6 -0.1100 -4.4028 2.6745 23 7 0.9725 -6.5814 2.6337 24 6 0.5182 -7.8497 2.8785 25 1 -0.4223 -7.9973 3.3887 26 6 1.2663 -8.9457 2.4711 27 7 2.5391 -8.7986 2.1704 28 14 0.4665 -10.6295 2.3495 29 1 -0.9630 -10.5277 2.7387 30 1 0.5647 -11.1245 0.9530 31 1 1.1617 -11.5746 3.2598 32 1 -0.3632 0.0528 1.0263 33 1 -0.3633 0.8624 -0.5589 34 1 -0.3633 -0.9152 -0.4674 35 1 5.2103 -1.5552 -1.0380 36 1 5.6686 -0.7851 0.4999 37 1 4.7677 -2.3202 0.5071 38 1 0.2855 -2.3935 -1.3364 39 1 1.8554 -2.6160 -2.1454 40 1 1.0596 -3.9963 -1.3517 41 1 0.2225 -5.6876 0.1542 42 1 1.7739 -4.8681 -0.1651 43 1 3.6637 -6.3916 2.6051 44 1 3.7606 -5.3668 1.1525 45 1 3.7299 -3.9816 3.2044 46 1 2.2654 -3.7042 2.2326 47 1 1.7120 -3.9589 4.6381 48 1 2.4692 -5.5706 4.6385 49 1 -0.2359 -3.4886 3.2546 50 1 -1.0853 -4.7901 2.3799 51 1 3.0621 -9.5645 1.8861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039943654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:21 Heat of formation + Delta-G solvation = 74.558161 kcal Electronic energy + Delta-G solvation = -33947.489314 eV Core-core repulsion = 29851.875619 eV Total energy + Delta-G solvation = -4095.613696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.83338 -40.85553 -38.04782 -35.58811 -34.21420 -33.62806 -32.96209 -32.20421 -31.33425 -30.39491 -28.61704 -27.64785 -27.03262 -25.61481 -24.82708 -23.61701 -22.15963 -21.50056 -21.08563 -20.12753 -19.18256 -18.34529 -17.62445 -17.30660 -16.72428 -16.13677 -15.54764 -15.21547 -14.74848 -14.24546 -14.17174 -14.02861 -13.62408 -13.57850 -13.46378 -13.33673 -13.15646 -12.98520 -12.92529 -12.66771 -12.50895 -12.41088 -12.20830 -12.05526 -11.98931 -11.72883 -11.51556 -11.34395 -11.23293 -10.92568 -10.77063 -10.73720 -10.31949 -10.20496 -10.13425 -10.07412 -9.72398 -9.64144 -9.42756 -9.32098 -9.01792 -8.59310 -7.90875 -6.66767 -5.90695 -3.34597 1.50601 2.30272 2.89085 3.13942 3.29081 3.38328 3.39071 3.41929 4.25872 4.38375 4.49828 4.57912 4.79618 4.95482 5.04856 5.14910 5.17087 5.25124 5.28581 5.32727 5.48264 5.58362 5.61399 5.67719 5.70708 5.72885 5.73210 5.76517 5.82591 5.86469 5.88130 5.95110 6.01483 6.02853 6.12536 6.21980 6.32124 6.35961 6.40596 6.44417 6.54397 6.66591 6.79667 6.95807 7.00947 7.06528 7.38572 7.48535 7.68718 7.85631 8.29919 8.38713 8.49090 9.06265 9.67735 10.30382 11.16166 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.003485 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.919319 B = 8032.561712 C = 8294.926882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.058 3.942 3 N -0.378 5.378 4 O 0.090 5.910 5 C -0.031 4.031 6 C -0.075 4.075 7 C -0.177 4.177 8 C -0.034 4.034 9 H 0.107 0.893 10 C -0.151 4.151 11 C 0.521 3.479 12 O -0.545 6.545 13 N -0.587 5.587 14 C 0.078 3.922 15 C 0.178 3.822 16 H 0.114 0.886 17 C -0.114 4.114 18 C -0.139 4.139 19 C -0.121 4.121 20 C 0.152 3.848 21 H 0.077 0.923 22 C 0.103 3.897 23 N -0.578 5.578 24 C -0.251 4.251 25 H 0.067 0.933 26 C 0.007 3.993 27 N -0.896 5.896 28 Si 0.900 3.100 29 H -0.278 1.278 30 H -0.289 1.289 31 H -0.291 1.291 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.078 0.922 47 H 0.040 0.960 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.061 0.939 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 11.144 -7.151 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 N -0.086 5.086 4 O 0.028 5.972 5 C -0.095 4.095 6 C -0.133 4.133 7 C -0.182 4.182 8 C -0.056 4.056 9 H 0.125 0.875 10 C -0.208 4.208 11 C 0.309 3.691 12 O -0.424 6.424 13 N -0.319 5.319 14 C -0.046 4.046 15 C 0.070 3.930 16 H 0.132 0.868 17 C -0.153 4.153 18 C -0.177 4.177 19 C -0.160 4.160 20 C 0.044 3.956 21 H 0.095 0.905 22 C -0.021 4.021 23 N -0.299 5.299 24 C -0.380 4.380 25 H 0.085 0.915 26 C -0.192 4.192 27 N -0.540 5.540 28 Si 0.730 3.270 29 H -0.203 1.203 30 H -0.216 1.216 31 H -0.218 1.218 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.225 12.767 -6.833 14.532 hybrid contribution -0.216 -1.870 0.089 1.884 sum 1.009 10.898 -6.743 12.855 Atomic orbital electron populations 1.20183 0.86136 1.02207 1.03943 1.23261 0.98827 0.87900 1.00126 1.73787 0.89215 1.23926 1.21691 1.84770 1.21799 1.22174 1.68441 1.24159 0.97934 0.84070 1.03294 1.20362 0.90100 0.98810 1.03985 1.20322 0.91719 0.96027 1.10092 1.19589 0.99635 0.90854 0.95497 0.87502 1.22028 1.00795 1.03098 0.94854 1.19993 0.81330 0.82620 0.85115 1.90654 1.55793 1.43087 1.52848 1.48093 1.52289 1.05715 1.25811 1.22903 0.99803 0.88505 0.93424 1.21122 0.88051 0.95194 0.88626 0.86812 1.21841 0.98555 0.96676 0.98242 1.22128 0.98197 0.99214 0.98201 1.21892 0.98083 0.98777 0.97244 1.21241 0.93876 0.88166 0.92325 0.90470 1.22220 0.93774 0.99703 0.86401 1.44383 1.58183 1.03588 1.23712 1.19178 1.00975 0.81712 1.36127 0.91545 1.25028 0.94701 0.97719 1.01776 1.69980 1.05146 1.29781 1.49099 0.86260 0.78936 0.84375 0.77393 1.20304 1.21567 1.21788 0.89179 0.91707 0.90723 0.89392 0.89822 0.88954 0.91809 0.91382 0.90191 0.91664 0.90518 0.90581 0.94762 0.95147 0.90466 0.94114 0.92371 0.90138 0.92069 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 8.84 36.01 0.32 -0.57 16 2 C 0.06 0.87 6.71 -82.10 -0.55 0.32 16 3 N -0.38 -5.94 12.07 33.42 0.40 -5.53 16 4 O 0.09 1.29 11.20 17.18 0.19 1.48 16 5 C -0.03 -0.39 7.49 -35.30 -0.26 -0.65 16 6 C -0.08 -0.63 10.20 36.00 0.37 -0.27 16 7 C -0.18 -2.45 4.64 -104.42 -0.48 -2.93 16 8 C -0.03 -0.44 2.09 -92.92 -0.19 -0.63 16 9 H 0.11 1.28 6.32 -51.93 -0.33 0.95 16 10 C -0.15 -1.60 8.70 37.16 0.32 -1.28 16 11 C 0.52 8.19 4.30 -10.98 -0.05 8.15 16 12 O -0.55 -9.94 12.61 5.56 0.07 -9.87 16 13 N -0.59 -9.51 1.64 -172.25 -0.28 -9.79 16 14 C 0.08 1.24 4.76 -3.49 -0.02 1.23 16 15 C 0.18 3.54 2.65 -66.85 -0.18 3.36 16 16 H 0.11 2.61 5.97 -51.93 -0.31 2.30 16 17 C -0.11 -2.17 5.55 -26.54 -0.15 -2.31 16 18 C -0.14 -2.50 5.55 -26.72 -0.15 -2.65 16 19 C -0.12 -2.29 5.58 -26.53 -0.15 -2.43 16 20 C 0.15 2.94 3.62 -66.85 -0.24 2.70 16 21 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 22 C 0.10 1.78 5.87 -3.49 -0.02 1.76 16 23 N -0.58 -12.69 2.53 -155.43 -0.39 -13.08 16 24 C -0.25 -6.21 9.70 -15.06 -0.15 -6.35 16 25 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 26 C 0.01 0.17 4.98 -17.43 -0.09 0.08 16 27 N -0.90 -23.21 10.95 55.49 0.61 -22.61 16 28 Si 0.90 20.14 29.59 -169.99 -5.03 15.11 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 31 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 32 H 0.09 1.31 7.30 -51.93 -0.38 0.93 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.92 5.98 -51.93 -0.31 0.61 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.78 7.33 -51.93 -0.38 0.40 16 38 H 0.06 0.69 6.03 -51.93 -0.31 0.38 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.81 5.44 -51.93 -0.28 0.53 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.02 4.31 -51.93 -0.22 0.80 16 43 H 0.08 1.72 7.90 -51.93 -0.41 1.31 16 44 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 1.34 2.29 -52.50 -0.12 1.22 16 47 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.25 6.44 8.31 -40.82 -0.34 6.11 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -28.89 374.62 -8.06 -36.96 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.61 Total: 4.16 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.66 Total: -2.48 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.34 Total: -51.01 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.26 Total: -8.39 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.89 -8.06 -36.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039943654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.515 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds