Wall clock time and date at job start Wed Apr 1 2020 04:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30173 * 126.80155 * 2 1 4 4 O 1.20920 * 111.60383 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56750 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.77840 * 180.26497 * 5 4 3 7 7 C 1.35450 * 106.44607 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.00659 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47581 * 89.99790 * 8 7 5 10 10 O 1.21283 * 119.99997 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00230 * 180.02562 * 9 8 7 12 12 C 1.47087 * 125.62614 * 0.02562 * 11 9 8 13 13 C 1.54468 * 107.30090 * 180.95938 * 12 11 9 14 14 C 1.54352 * 102.86112 * 21.47725 * 13 12 11 15 15 C 1.47579 * 125.62858 * 179.71871 * 11 9 8 16 16 C 1.52067 * 110.60615 * 83.53627 * 14 13 12 17 17 C 1.53190 * 109.67715 * 64.19092 * 16 14 13 18 18 C 1.53185 * 109.27898 * 59.95142 * 17 16 14 19 19 N 1.46933 * 108.93480 * 304.68587 * 18 17 16 20 20 C 1.36943 * 120.70974 * 234.27354 * 19 18 17 21 21 H 1.07996 * 120.00042 * 27.15937 * 20 19 18 22 22 C 1.38814 * 119.99495 * 207.15706 * 20 19 18 23 23 N 1.31620 * 120.00213 * 17.17931 * 22 20 19 24 24 Si 1.86795 * 119.99762 * 197.17957 * 22 20 19 25 25 H 1.48505 * 109.47296 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47181 * 119.99846 * 24 22 20 27 27 H 1.48500 * 109.47454 * 240.00136 * 24 22 20 28 28 C 1.47099 * 118.57477 * 54.25603 * 19 18 17 29 29 H 1.08993 * 109.47920 * 269.96203 * 1 2 3 30 30 H 1.09001 * 109.47138 * 29.96258 * 1 2 3 31 31 H 1.09001 * 109.47429 * 149.95460 * 1 2 3 32 32 H 1.09000 * 109.46696 * 269.68502 * 6 5 4 33 33 H 1.09004 * 109.46988 * 29.67869 * 6 5 4 34 34 H 1.08990 * 109.47355 * 149.68343 * 6 5 4 35 35 H 1.09001 * 109.46761 * 210.00087 * 8 7 5 36 36 H 1.09003 * 109.47205 * 329.99159 * 8 7 5 37 37 H 1.09000 * 109.87544 * 300.38345 * 12 11 9 38 38 H 1.08999 * 109.87804 * 61.53081 * 12 11 9 39 39 H 1.08995 * 110.73003 * 139.82026 * 13 12 11 40 40 H 1.08994 * 110.73103 * 263.13508 * 13 12 11 41 41 H 1.08997 * 110.37300 * 275.56774 * 15 11 9 42 42 H 1.09002 * 110.37842 * 37.91356 * 15 11 9 43 43 H 1.09004 * 109.43954 * 184.25002 * 16 14 13 44 44 H 1.08995 * 109.44021 * 304.16478 * 16 14 13 45 45 H 1.09011 * 109.50213 * 179.89578 * 17 16 14 46 46 H 1.08998 * 109.50387 * 299.96506 * 17 16 14 47 47 H 1.08998 * 109.55747 * 64.52641 * 18 17 16 48 48 H 1.09005 * 109.55621 * 184.74141 * 18 17 16 49 49 H 0.97002 * 119.99781 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58017 * 187.94203 * 28 19 18 51 51 H 1.08999 * 109.57606 * 67.55406 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 -0.0015 6 6 4.9021 -1.3696 0.0033 7 6 2.3539 -1.1320 -0.0010 8 6 1.9590 -2.5863 -0.0011 9 6 1.8281 -3.0716 1.4196 10 8 2.0347 -2.3112 2.3416 11 7 1.4815 -4.3506 1.6657 12 6 1.2041 -5.3743 0.6467 13 6 0.8265 -6.6737 1.3918 14 6 0.3824 -6.1585 2.7773 15 6 1.3240 -4.9567 3.0020 16 6 -1.0709 -5.7123 2.7419 17 6 -1.9727 -6.9151 2.4475 18 6 -1.7873 -7.9670 3.5455 19 7 -0.3616 -8.3092 3.6421 20 6 0.0530 -9.6110 3.5488 21 1 -0.5341 -10.3261 2.9917 22 6 1.2279 -10.0114 4.1703 23 7 1.7632 -9.2623 5.1109 24 14 2.0492 -11.6133 3.6716 25 1 1.2536 -12.2650 2.6003 26 1 3.4186 -11.3324 3.1705 27 1 2.1280 -12.5163 4.8478 28 6 0.6107 -7.2234 3.8408 29 1 -0.3635 -0.0007 1.0275 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 5.2170 -1.5571 -1.0233 33 1 5.6652 -0.7841 0.5162 34 1 4.7643 -2.3192 0.5202 35 1 1.0046 -2.7036 -0.5145 36 1 2.7224 -3.1701 -0.5156 37 1 0.3747 -5.0543 0.0160 38 1 2.0925 -5.5412 0.0375 39 1 0.0049 -7.1825 0.8877 40 1 1.6910 -7.3311 1.4834 41 1 2.2885 -5.2929 3.3823 42 1 0.8710 -4.2439 3.6911 43 1 -1.3422 -5.2830 3.7064 44 1 -1.2012 -4.9624 1.9617 45 1 -3.0137 -6.5924 2.4246 46 1 -1.7035 -7.3442 1.4824 47 1 -2.1314 -7.5645 4.4983 48 1 -2.3624 -8.8590 3.2971 49 1 2.5840 -9.5423 5.5453 50 1 1.6226 -7.6183 3.7509 51 1 0.4736 -6.7869 4.8301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040524059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:05 Heat of formation + Delta-G solvation = 39.848908 kcal Electronic energy + Delta-G solvation = -31858.229250 eV Core-core repulsion = 27761.110448 eV Total energy + Delta-G solvation = -4097.118802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.01480 -40.28722 -38.52806 -35.90670 -35.33179 -33.79545 -33.09311 -31.62186 -30.09556 -29.90644 -29.34344 -28.79235 -27.43547 -25.42243 -25.36710 -23.05897 -22.20173 -21.97117 -20.71480 -20.31941 -19.18560 -18.16384 -17.77241 -17.07119 -16.86599 -16.63088 -16.04871 -15.26439 -14.87524 -14.66960 -14.31781 -14.12611 -13.94249 -13.64702 -13.50878 -13.40625 -13.29450 -13.17122 -13.15200 -12.84201 -12.70691 -12.56690 -12.44181 -12.39714 -12.18750 -12.03974 -11.72930 -11.21867 -11.09522 -11.04898 -10.79413 -10.62203 -10.45081 -10.22170 -10.14311 -10.07257 -9.88374 -9.78766 -9.61537 -9.48065 -9.21061 -8.53573 -8.47053 -6.72828 -5.84529 -3.25771 1.33554 2.04505 2.66928 2.95454 3.17348 3.32140 3.41103 3.42348 4.03005 4.28918 4.43520 4.51783 4.56642 4.71778 4.90403 4.99368 5.03266 5.13183 5.14850 5.19535 5.25012 5.33237 5.34669 5.41175 5.45369 5.47700 5.55038 5.55875 5.58136 5.62746 5.75847 5.78105 5.98215 6.00658 6.01326 6.12181 6.16063 6.29089 6.30479 6.40419 6.44543 6.62526 6.70163 6.75842 6.84769 6.96331 7.25814 7.55042 7.64463 7.74627 8.17836 8.22966 8.37975 9.15065 9.78733 10.35946 11.24107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.002628 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.828114 B =10652.751873 C =11531.858880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.017 4.017 6 C -0.074 4.074 7 C -0.183 4.183 8 C -0.058 4.058 9 C 0.525 3.475 10 O -0.538 6.538 11 N -0.612 5.612 12 C 0.097 3.903 13 C -0.108 4.108 14 C -0.091 4.091 15 C 0.119 3.881 16 C -0.091 4.091 17 C -0.134 4.134 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.190 3.810 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.091 0.909 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 12.793 -13.714 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.081 4.081 6 C -0.132 4.132 7 C -0.187 4.187 8 C -0.098 4.098 9 C 0.313 3.687 10 O -0.415 6.415 11 N -0.347 5.347 12 C -0.026 4.026 13 C -0.145 4.145 14 C -0.093 4.093 15 C -0.004 4.004 16 C -0.129 4.129 17 C -0.173 4.173 18 C 0.017 3.983 19 N -0.311 5.311 20 C -0.378 4.378 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.729 3.271 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.063 3.937 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.545 14.539 -13.133 19.600 hybrid contribution 0.373 -1.648 -0.149 1.696 sum 0.918 12.892 -13.282 18.532 Atomic orbital electron populations 1.20161 0.86122 1.03406 1.03639 1.23335 0.98798 0.88391 1.01939 1.73799 0.89236 1.23851 1.20787 1.84772 1.21678 1.22375 1.68045 1.24168 0.98085 0.83829 1.02004 1.20347 0.90164 0.98853 1.03811 1.20237 0.91905 0.95991 1.10555 1.19860 1.04297 0.90250 0.95376 1.20049 0.77226 0.80529 0.90907 1.90722 1.50339 1.54177 1.46303 1.48642 1.67778 1.09170 1.09064 1.22228 0.99844 0.89273 0.91251 1.22529 1.02356 0.94398 0.95263 1.21880 0.93985 0.95453 0.97996 1.22285 0.99841 0.94499 0.83740 1.21166 0.94234 0.96972 1.00502 1.22076 0.97485 0.97007 1.00768 1.20908 0.87242 0.95512 0.94630 1.44019 0.99416 1.02927 1.84746 1.19189 1.06757 0.86081 1.25810 0.91616 1.25014 1.00607 0.97790 0.96210 1.70033 1.21391 1.38950 1.24255 0.86278 0.79406 0.83444 0.77983 1.20286 1.21586 1.21782 1.20542 0.96029 0.85429 0.91671 0.89963 0.90566 0.90247 0.89369 0.89641 0.89157 0.87740 0.87740 0.91906 0.91838 0.89753 0.90289 0.91141 0.90922 0.92661 0.93649 0.93233 0.92151 0.96562 0.92925 0.93646 0.89122 0.96232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 36.01 0.37 -0.36 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16 3 N -0.37 -5.23 12.07 33.42 0.40 -4.82 16 4 O 0.09 1.24 11.20 17.18 0.19 1.43 16 5 C -0.02 -0.19 7.49 -35.30 -0.26 -0.46 16 6 C -0.07 -0.56 10.25 36.01 0.37 -0.19 16 7 C -0.18 -2.17 4.81 -104.43 -0.50 -2.67 16 8 C -0.06 -0.58 5.14 -29.04 -0.15 -0.73 16 9 C 0.53 7.33 7.84 -10.99 -0.09 7.24 16 10 O -0.54 -9.76 16.30 5.56 0.09 -9.67 16 11 N -0.61 -8.40 3.32 -170.63 -0.57 -8.97 16 12 C 0.10 1.11 6.12 -2.95 -0.02 1.10 16 13 C -0.11 -1.59 5.67 -25.25 -0.14 -1.74 16 14 C -0.09 -1.51 0.55 -153.98 -0.08 -1.59 16 15 C 0.12 1.91 5.83 -2.76 -0.02 1.90 16 16 C -0.09 -1.42 4.68 -27.11 -0.13 -1.54 16 17 C -0.13 -2.11 5.91 -26.54 -0.16 -2.27 16 18 C 0.14 2.80 6.49 -3.71 -0.02 2.78 16 19 N -0.59 -13.54 2.89 -172.76 -0.50 -14.03 16 20 C -0.25 -6.35 9.60 -15.06 -0.14 -6.50 16 21 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -24.91 11.17 55.49 0.62 -24.29 16 24 Si 0.90 20.64 29.59 -169.99 -5.03 15.61 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C 0.19 4.11 3.96 -4.11 -0.02 4.09 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.61 7.66 -51.93 -0.40 0.22 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 35 H 0.10 0.84 7.66 -51.93 -0.40 0.44 16 36 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.25 6.09 -51.93 -0.32 0.93 16 40 H 0.08 1.30 7.87 -51.93 -0.41 0.89 16 41 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 42 H 0.07 1.24 7.95 -51.93 -0.41 0.83 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.64 7.83 -51.93 -0.41 0.24 16 45 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.06 0.94 6.31 -51.93 -0.33 0.61 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 49 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 50 H 0.09 2.22 5.90 -51.93 -0.31 1.91 16 51 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 401.81 15.07 6.06 6.06 Total: -1.00 -31.77 401.81 -8.83 -40.59 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.42 Total: -0.80 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.68 Total: -1.12 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.04 Total: -52.11 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.28 Total: -8.24 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.77 -8.83 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.443 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds