Wall clock time and date at job start Wed Apr 1 2020 04:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30173 * 126.80155 * 2 1 4 4 O 1.20920 * 111.60383 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56750 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.77840 * 180.26497 * 5 4 3 7 7 C 1.35450 * 106.44607 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.00659 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47581 * 89.99790 * 8 7 5 10 10 O 1.21283 * 119.99997 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00230 * 180.02562 * 9 8 7 12 12 C 1.47087 * 125.62614 * 0.02562 * 11 9 8 13 13 C 1.54468 * 107.30090 * 180.95938 * 12 11 9 14 14 C 1.54352 * 102.86112 * 21.47725 * 13 12 11 15 15 C 1.47579 * 125.62858 * 179.71871 * 11 9 8 16 16 C 1.52067 * 110.60615 * 83.53627 * 14 13 12 17 17 C 1.53190 * 109.67715 * 64.19092 * 16 14 13 18 18 C 1.53185 * 109.27898 * 59.95142 * 17 16 14 19 19 N 1.46933 * 108.93480 * 304.68587 * 18 17 16 20 20 C 1.36943 * 120.70974 * 234.27354 * 19 18 17 21 21 H 1.07996 * 120.00042 * 27.15937 * 20 19 18 22 22 C 1.38814 * 119.99495 * 207.15706 * 20 19 18 23 23 N 1.31620 * 120.00213 * 17.17931 * 22 20 19 24 24 Si 1.86795 * 119.99762 * 197.17957 * 22 20 19 25 25 H 1.48505 * 109.47296 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47181 * 119.99846 * 24 22 20 27 27 H 1.48500 * 109.47454 * 240.00136 * 24 22 20 28 28 C 1.47099 * 118.57477 * 54.25603 * 19 18 17 29 29 H 1.08993 * 109.47920 * 269.96203 * 1 2 3 30 30 H 1.09001 * 109.47138 * 29.96258 * 1 2 3 31 31 H 1.09001 * 109.47429 * 149.95460 * 1 2 3 32 32 H 1.09000 * 109.46696 * 269.68502 * 6 5 4 33 33 H 1.09004 * 109.46988 * 29.67869 * 6 5 4 34 34 H 1.08990 * 109.47355 * 149.68343 * 6 5 4 35 35 H 1.09001 * 109.46761 * 210.00087 * 8 7 5 36 36 H 1.09003 * 109.47205 * 329.99159 * 8 7 5 37 37 H 1.09000 * 109.87544 * 300.38345 * 12 11 9 38 38 H 1.08999 * 109.87804 * 61.53081 * 12 11 9 39 39 H 1.08995 * 110.73003 * 139.82026 * 13 12 11 40 40 H 1.08994 * 110.73103 * 263.13508 * 13 12 11 41 41 H 1.08997 * 110.37300 * 275.56774 * 15 11 9 42 42 H 1.09002 * 110.37842 * 37.91356 * 15 11 9 43 43 H 1.09004 * 109.43954 * 184.25002 * 16 14 13 44 44 H 1.08995 * 109.44021 * 304.16478 * 16 14 13 45 45 H 1.09011 * 109.50213 * 179.89578 * 17 16 14 46 46 H 1.08998 * 109.50387 * 299.96506 * 17 16 14 47 47 H 1.08998 * 109.55747 * 64.52641 * 18 17 16 48 48 H 1.09005 * 109.55621 * 184.74141 * 18 17 16 49 49 H 0.97002 * 119.99781 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.58017 * 187.94203 * 28 19 18 51 51 H 1.08999 * 109.57606 * 67.55406 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 -0.0015 6 6 4.9021 -1.3696 0.0033 7 6 2.3539 -1.1320 -0.0010 8 6 1.9590 -2.5863 -0.0011 9 6 1.8281 -3.0716 1.4196 10 8 2.0347 -2.3112 2.3416 11 7 1.4815 -4.3506 1.6657 12 6 1.2041 -5.3743 0.6467 13 6 0.8265 -6.6737 1.3918 14 6 0.3824 -6.1585 2.7773 15 6 1.3240 -4.9567 3.0020 16 6 -1.0709 -5.7123 2.7419 17 6 -1.9727 -6.9151 2.4475 18 6 -1.7873 -7.9670 3.5455 19 7 -0.3616 -8.3092 3.6421 20 6 0.0530 -9.6110 3.5488 21 1 -0.5341 -10.3261 2.9917 22 6 1.2279 -10.0114 4.1703 23 7 1.7632 -9.2623 5.1109 24 14 2.0492 -11.6133 3.6716 25 1 1.2536 -12.2650 2.6003 26 1 3.4186 -11.3324 3.1705 27 1 2.1280 -12.5163 4.8478 28 6 0.6107 -7.2234 3.8408 29 1 -0.3635 -0.0007 1.0275 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3634 -0.8896 -0.5145 32 1 5.2170 -1.5571 -1.0233 33 1 5.6652 -0.7841 0.5162 34 1 4.7643 -2.3192 0.5202 35 1 1.0046 -2.7036 -0.5145 36 1 2.7224 -3.1701 -0.5156 37 1 0.3747 -5.0543 0.0160 38 1 2.0925 -5.5412 0.0375 39 1 0.0049 -7.1825 0.8877 40 1 1.6910 -7.3311 1.4834 41 1 2.2885 -5.2929 3.3823 42 1 0.8710 -4.2439 3.6911 43 1 -1.3422 -5.2830 3.7064 44 1 -1.2012 -4.9624 1.9617 45 1 -3.0137 -6.5924 2.4246 46 1 -1.7035 -7.3442 1.4824 47 1 -2.1314 -7.5645 4.4983 48 1 -2.3624 -8.8590 3.2971 49 1 2.5840 -9.5423 5.5453 50 1 1.6226 -7.6183 3.7509 51 1 0.4736 -6.7869 4.8301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040524059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:03 Heat of formation + Delta-G solvation = 21.745089 kcal Electronic energy + Delta-G solvation = -31859.014290 eV Core-core repulsion = 27761.110448 eV Total energy + Delta-G solvation = -4097.903842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.90428 -41.49632 -39.80784 -37.31566 -36.24427 -34.78817 -34.58903 -32.99318 -31.75243 -30.85207 -30.50539 -29.60114 -28.25603 -27.20711 -26.70174 -24.27320 -23.70912 -22.99304 -22.14659 -21.17980 -20.26841 -19.56030 -18.78239 -18.44804 -17.99718 -17.80524 -17.18856 -16.69884 -16.28141 -15.73400 -15.71510 -15.27236 -15.22462 -14.82059 -14.70847 -14.57416 -14.32328 -14.16072 -14.02816 -13.94151 -13.87352 -13.63517 -13.42984 -13.36390 -13.31554 -13.13606 -12.92826 -12.86421 -12.68613 -12.49148 -12.12114 -12.03786 -11.90903 -11.81533 -11.63927 -11.37870 -11.15841 -11.06499 -11.02198 -10.75478 -10.50593 -10.07321 -9.60317 -8.63506 -7.83134 -5.26905 0.48590 1.15227 1.48045 1.51343 1.60634 1.63418 2.05993 2.23032 2.54624 3.22848 3.29874 3.43597 3.53290 3.71803 3.75832 3.81740 3.89643 3.99608 4.06654 4.29167 4.33276 4.34500 4.43948 4.47536 4.55707 4.56833 4.62578 4.64628 4.67216 4.69939 4.74426 4.77617 4.81196 4.85982 4.88049 4.96381 5.00754 5.12300 5.16305 5.17066 5.23364 5.27292 5.33533 5.37199 5.41552 5.51432 5.63955 5.72776 5.78451 6.42361 6.59474 7.16510 7.18876 7.30328 7.90380 8.42956 9.23314 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.002628 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.828114 B =10652.751873 C =11531.858880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.023 3.977 3 N -0.403 5.403 4 O 0.078 5.922 5 C -0.018 4.018 6 C -0.074 4.074 7 C -0.200 4.200 8 C -0.046 4.046 9 C 0.525 3.475 10 O -0.588 6.588 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.104 4.104 14 C -0.083 4.083 15 C 0.125 3.875 16 C -0.086 4.086 17 C -0.120 4.120 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.249 4.249 21 H 0.070 0.930 22 C -0.051 4.051 23 N -0.937 5.937 24 Si 0.961 3.039 25 H -0.263 1.263 26 H -0.291 1.291 27 H -0.300 1.300 28 C 0.203 3.797 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.003 0.997 48 H 0.054 0.946 49 H 0.247 0.753 50 H 0.057 0.943 51 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 12.577 -17.474 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.113 5.113 4 O 0.017 5.983 5 C -0.082 4.082 6 C -0.131 4.131 7 C -0.204 4.204 8 C -0.086 4.086 9 C 0.315 3.685 10 O -0.469 6.469 11 N -0.342 5.342 12 C -0.019 4.019 13 C -0.142 4.142 14 C -0.085 4.085 15 C 0.001 3.999 16 C -0.123 4.123 17 C -0.159 4.159 18 C 0.010 3.990 19 N -0.327 5.327 20 C -0.379 4.379 21 H 0.087 0.913 22 C -0.246 4.246 23 N -0.584 5.584 24 Si 0.790 3.210 25 H -0.187 1.187 26 H -0.217 1.217 27 H -0.227 1.227 28 C 0.076 3.924 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.075 0.925 51 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges -0.360 14.314 -16.941 22.181 hybrid contribution 0.619 -1.595 1.127 2.049 sum 0.259 12.718 -15.814 20.295 Atomic orbital electron populations 1.20286 0.84423 1.05132 1.03521 1.23923 1.00155 0.88546 1.00944 1.73783 0.89813 1.25105 1.22647 1.84726 1.21511 1.23522 1.68526 1.24901 0.99623 0.83301 1.00381 1.20538 0.88597 0.98210 1.05781 1.20543 0.91883 0.96813 1.11190 1.19942 1.07011 0.89123 0.92490 1.20792 0.75777 0.79727 0.92196 1.90712 1.52445 1.55434 1.48285 1.48649 1.67625 1.09747 1.08212 1.22373 1.02634 0.86496 0.90388 1.22434 1.01590 0.96005 0.94129 1.21605 0.95361 0.93970 0.97587 1.21963 0.98505 0.94081 0.85353 1.21130 0.92797 0.97549 1.00834 1.21939 0.99263 0.95437 0.99250 1.21103 0.85157 0.97005 0.95696 1.44273 1.01142 1.02512 1.84750 1.19500 1.06510 0.87233 1.24673 0.91279 1.25716 1.01541 1.00798 0.96538 1.70203 1.21621 1.40740 1.25825 0.85302 0.78364 0.79927 0.77446 1.18750 1.21743 1.22740 1.20228 0.94158 0.86314 0.91673 0.90838 0.89780 0.87661 0.86371 0.89022 0.89184 0.84656 0.84472 0.88201 0.88923 0.88994 0.92713 0.93286 0.92524 0.94049 0.90737 0.90266 0.91024 0.97882 0.92726 0.94382 0.92482 1.00205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.39 71.24 0.74 -0.59 16 2 C 0.02 0.56 7.33 43.58 0.32 0.88 16 3 N -0.40 -11.30 12.07 -49.57 -0.60 -11.90 16 4 O 0.08 2.01 11.20 71.65 0.80 2.81 16 5 C -0.02 -0.39 7.49 25.04 0.19 -0.20 16 6 C -0.07 -0.93 10.25 71.24 0.73 -0.20 16 7 C -0.20 -4.27 4.81 -19.74 -0.10 -4.37 16 8 C -0.05 -0.73 5.14 29.10 0.15 -0.58 16 9 C 0.52 13.34 7.84 87.66 0.69 14.03 16 10 O -0.59 -21.05 16.30 -3.04 -0.05 -21.10 16 11 N -0.61 -15.16 3.32 -812.13 -2.70 -17.85 16 12 C 0.10 1.89 6.12 86.77 0.53 2.42 16 13 C -0.10 -2.82 5.67 31.55 0.18 -2.65 16 14 C -0.08 -2.73 0.55 -51.84 -0.03 -2.76 16 15 C 0.12 4.06 5.83 86.62 0.50 4.57 16 16 C -0.09 -2.47 4.68 30.35 0.14 -2.33 16 17 C -0.12 -3.42 5.91 30.72 0.18 -3.24 16 18 C 0.14 5.22 6.49 86.36 0.56 5.78 16 19 N -0.60 -28.21 2.89 -700.50 -2.02 -30.23 16 20 C -0.25 -12.83 9.60 84.03 0.81 -12.03 16 21 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 22 C -0.05 -2.72 4.92 84.86 0.42 -2.31 16 23 N -0.94 -54.12 11.17 21.65 0.24 -53.88 16 24 Si 0.96 43.07 29.59 68.60 2.03 45.10 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 28 C 0.20 9.18 3.96 86.01 0.34 9.52 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.23 7.66 -2.39 -0.02 1.21 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.14 1.35 7.66 -2.39 -0.02 1.33 16 36 H 0.14 1.30 8.08 -2.39 -0.02 1.29 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 2.38 6.09 -2.39 -0.01 2.37 16 40 H 0.05 1.76 7.87 -2.39 -0.02 1.74 16 41 H 0.05 1.78 8.01 -2.39 -0.02 1.76 16 42 H 0.06 2.01 7.95 -2.39 -0.02 1.99 16 43 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.07 1.78 7.83 -2.39 -0.02 1.76 16 45 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.07 1.93 6.31 -2.39 -0.02 1.91 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.05 2.04 7.94 -2.38 -0.02 2.03 16 49 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 50 H 0.06 2.96 5.90 -2.39 -0.01 2.95 16 51 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 Total: -1.00 -74.60 401.81 4.98 -69.62 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.92 Total: 11.49 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.35 Total: 5.95 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -5.07 Total: -113.87 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.75 Total: -18.29 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.60 4.98 -69.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.364 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds