Wall clock time and date at job start Wed Apr 1 2020 04:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30169 * 126.80255 * 2 1 4 4 O 1.20927 * 111.60582 * 180.24705 * 3 2 1 5 5 C 1.34043 * 111.56630 * 359.74721 * 4 3 2 6 6 C 1.50696 * 126.77976 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.44532 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00900 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46825 * 89.99745 * 8 7 5 10 10 O 1.21272 * 120.00279 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99644 * 179.97438 * 9 8 7 12 12 C 1.47093 * 125.62509 * 0.03284 * 11 9 8 13 13 C 1.54466 * 107.29576 * 180.97845 * 12 11 9 14 14 C 1.54349 * 102.86687 * 21.47244 * 13 12 11 15 15 C 1.47582 * 125.63007 * 179.71949 * 11 9 8 16 16 C 1.52075 * 110.60422 * 207.23650 * 14 13 12 17 17 C 1.53185 * 109.67614 * 295.83097 * 16 14 13 18 18 C 1.53190 * 109.27517 * 300.04344 * 17 16 14 19 19 N 1.46933 * 108.94297 * 55.31464 * 18 17 16 20 20 C 1.36942 * 120.71819 * 125.76554 * 19 18 17 21 21 H 1.07996 * 120.00153 * 332.36699 * 20 19 18 22 22 C 1.38809 * 120.00137 * 152.36224 * 20 19 18 23 23 N 1.31626 * 120.00021 * 343.23678 * 22 20 19 24 24 Si 1.86802 * 120.00329 * 163.23489 * 22 20 19 25 25 H 1.48505 * 109.46771 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47111 * 120.00199 * 24 22 20 27 27 H 1.48500 * 109.47032 * 240.00525 * 24 22 20 28 28 C 1.47111 * 118.56807 * 305.74930 * 19 18 17 29 29 H 1.08990 * 109.47527 * 270.16628 * 1 2 3 30 30 H 1.09001 * 109.46571 * 30.17280 * 1 2 3 31 31 H 1.09006 * 109.47192 * 150.16640 * 1 2 3 32 32 H 1.09000 * 109.46735 * 269.99949 * 6 5 4 33 33 H 1.09000 * 109.47289 * 29.99446 * 6 5 4 34 34 H 1.09002 * 109.47357 * 149.99545 * 6 5 4 35 35 H 1.08998 * 109.46561 * 330.00360 * 8 7 5 36 36 H 1.08996 * 109.47115 * 210.00391 * 8 7 5 37 37 H 1.09000 * 109.87367 * 300.39451 * 12 11 9 38 38 H 1.08992 * 109.88014 * 61.55251 * 12 11 9 39 39 H 1.08998 * 110.73477 * 139.82217 * 13 12 11 40 40 H 1.09005 * 110.73048 * 263.12724 * 13 12 11 41 41 H 1.09003 * 110.37492 * 275.55597 * 15 11 9 42 42 H 1.09004 * 110.37215 * 37.90223 * 15 11 9 43 43 H 1.09001 * 109.43798 * 55.89774 * 16 14 13 44 44 H 1.09005 * 109.43139 * 175.76962 * 16 14 13 45 45 H 1.09004 * 109.50031 * 180.10956 * 17 16 14 46 46 H 1.08994 * 109.53681 * 60.00989 * 17 16 14 47 47 H 1.09003 * 109.56081 * 295.47371 * 18 17 16 48 48 H 1.09000 * 109.56100 * 175.15082 * 18 17 16 49 49 H 0.96993 * 119.99901 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.57470 * 292.44206 * 28 19 18 51 51 H 1.08997 * 109.57568 * 172.05921 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0048 5 6 3.6025 -0.6069 -0.0033 6 6 4.9021 -1.3697 -0.0075 7 6 2.3539 -1.1321 0.0039 8 6 1.9590 -2.5864 0.0079 9 6 1.8348 -3.0693 1.4300 10 8 2.0458 -2.3075 2.3497 11 7 1.4884 -4.3476 1.6798 12 6 1.2051 -5.3727 0.6636 13 6 0.8295 -6.6703 1.4127 14 6 0.3926 -6.1525 2.7995 15 6 1.3369 -4.9516 3.0178 16 6 0.6204 -7.2149 3.8635 17 6 -0.2731 -8.4269 3.5819 18 6 -1.7409 -7.9888 3.6026 19 7 -1.9235 -6.8876 2.6471 20 6 -2.8762 -6.9632 1.6663 21 1 -3.1856 -7.9260 1.2871 22 6 -3.4442 -5.8026 1.1595 23 7 -3.3298 -4.6705 1.8212 24 14 -4.3712 -5.8470 -0.4617 25 1 -4.3558 -7.2299 -1.0029 26 1 -5.7753 -5.4168 -0.2410 27 1 -3.7188 -4.9297 -1.4303 28 6 -1.0611 -5.7018 2.7671 29 1 -0.3634 0.0030 1.0275 30 1 -0.3632 0.8885 -0.5165 31 1 -0.3634 -0.8915 -0.5113 32 1 5.2111 -1.5552 -1.0362 33 1 5.6681 -0.7852 0.5021 34 1 4.7672 -2.3203 0.5085 35 1 2.7200 -3.1709 -0.5091 36 1 1.0023 -2.7045 -0.5008 37 1 0.3729 -5.0528 0.0365 38 1 2.0903 -5.5416 0.0507 39 1 0.0050 -7.1792 0.9134 40 1 1.6937 -7.3287 1.5012 41 1 2.3031 -5.2883 3.3938 42 1 0.8882 -4.2372 3.7081 43 1 1.6656 -7.5237 3.8498 44 1 0.3768 -6.8046 4.8436 45 1 -0.1090 -9.1856 4.3472 46 1 -0.0301 -8.8392 2.6027 47 1 -2.0068 -7.6508 4.6042 48 1 -2.3761 -8.8277 3.3183 49 1 -3.7264 -3.8594 1.4669 50 1 -1.2989 -5.1689 3.6877 51 1 -1.2211 -5.0458 1.9114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040524060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:08 Heat of formation + Delta-G solvation = 38.699610 kcal Electronic energy + Delta-G solvation = -32413.758948 eV Core-core repulsion = 28316.590309 eV Total energy + Delta-G solvation = -4097.168639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.86415 -40.16623 -38.43080 -35.80877 -35.16784 -33.65609 -33.22034 -31.49249 -30.10286 -29.77746 -29.15105 -28.57681 -27.31149 -25.54641 -25.25723 -22.88898 -22.25383 -21.86692 -20.66580 -20.16098 -19.07309 -18.13154 -17.64338 -16.92539 -16.78467 -16.53474 -15.88791 -15.25248 -14.78377 -14.52114 -14.20468 -14.11187 -13.72558 -13.70896 -13.50426 -13.44867 -13.14179 -13.02070 -12.96915 -12.62952 -12.52694 -12.50588 -12.31544 -12.20118 -12.04447 -11.94033 -11.75652 -11.24778 -11.03171 -10.94170 -10.92027 -10.69027 -10.42436 -10.17148 -10.09999 -9.93248 -9.86543 -9.69465 -9.54033 -9.44757 -9.07665 -8.54158 -8.33742 -6.72647 -5.84328 -3.26819 1.47345 2.21608 2.83511 3.09049 3.29601 3.31771 3.39493 3.40617 4.21132 4.42420 4.44485 4.67459 4.71005 4.86005 4.96019 5.06302 5.20026 5.21810 5.23576 5.28125 5.35998 5.40144 5.50749 5.53120 5.60825 5.61355 5.64182 5.67462 5.70915 5.78278 5.81859 5.93398 5.97051 5.98604 6.16597 6.20088 6.21415 6.23494 6.33650 6.43384 6.49042 6.61646 6.73294 6.78777 6.86008 6.96409 7.27955 7.60563 7.74553 7.77673 8.33470 8.38183 8.38584 9.15037 9.78785 10.36373 11.23779 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.003649 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.064806 B = 7670.475342 C = 9283.861201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.039 3.961 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.023 4.023 6 C -0.072 4.072 7 C -0.178 4.178 8 C -0.059 4.059 9 C 0.530 3.470 10 O -0.540 6.540 11 N -0.609 5.609 12 C 0.101 3.899 13 C -0.112 4.112 14 C -0.093 4.093 15 C 0.120 3.880 16 C -0.093 4.093 17 C -0.132 4.132 18 C 0.142 3.858 19 N -0.590 5.590 20 C -0.252 4.252 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.191 3.809 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.253 0.747 50 H 0.017 0.983 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.709 -0.170 -4.439 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 N -0.078 5.078 4 O 0.030 5.970 5 C -0.087 4.087 6 C -0.129 4.129 7 C -0.182 4.182 8 C -0.099 4.099 9 C 0.318 3.682 10 O -0.417 6.417 11 N -0.343 5.343 12 C -0.022 4.022 13 C -0.150 4.150 14 C -0.095 4.095 15 C -0.003 4.003 16 C -0.131 4.131 17 C -0.172 4.172 18 C 0.016 3.984 19 N -0.312 5.312 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.194 4.194 23 N -0.543 5.543 24 Si 0.725 3.275 25 H -0.202 1.202 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.065 3.935 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.536 1.797 -4.019 15.188 hybrid contribution -0.703 -0.744 -0.777 1.285 sum 13.833 1.053 -4.796 14.678 Atomic orbital electron populations 1.20200 0.85851 1.03567 1.03977 1.23390 0.98921 0.88291 1.01444 1.73792 0.89189 1.23839 1.20997 1.84762 1.21759 1.22294 1.68166 1.24110 0.97961 0.83939 1.02698 1.20304 0.90196 0.98736 1.03659 1.20255 0.91861 0.96051 1.10071 1.19871 1.04503 0.90168 0.95405 1.19987 0.76993 0.80361 0.90882 1.90701 1.50600 1.53872 1.46523 1.48485 1.67750 1.09363 1.08702 1.22153 0.99851 0.88835 0.91375 1.22530 1.01267 0.95058 0.96123 1.21922 0.99333 0.93705 0.94543 1.22232 0.98386 0.95192 0.84468 1.21183 0.98282 0.95628 0.98002 1.22019 0.98150 0.96377 1.00608 1.20923 0.92821 0.91805 0.92849 1.44063 1.37957 1.16293 1.32873 1.19192 1.14811 0.92629 1.11492 0.91629 1.25017 0.98457 0.96646 0.99265 1.70046 1.47665 0.99602 1.37021 0.86330 0.79522 0.77552 0.84055 1.20225 1.21732 1.21589 1.20543 0.82691 0.89073 1.01230 0.89713 0.90621 0.89968 0.89508 0.89799 0.89334 0.87894 0.87396 0.90993 0.92166 0.88409 0.92033 0.92270 0.90650 0.93313 0.92497 0.93163 0.92200 0.96590 0.92923 0.93685 0.96540 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.39 36.01 0.37 -0.69 16 2 C 0.04 0.59 7.33 -82.10 -0.60 -0.01 16 3 N -0.37 -5.95 12.07 33.42 0.40 -5.55 16 4 O 0.09 1.36 11.20 17.17 0.19 1.55 16 5 C -0.02 -0.30 7.49 -35.30 -0.26 -0.56 16 6 C -0.07 -0.58 10.25 36.00 0.37 -0.21 16 7 C -0.18 -2.49 4.82 -104.42 -0.50 -2.99 16 8 C -0.06 -0.74 5.14 -29.03 -0.15 -0.89 16 9 C 0.53 8.54 7.84 -10.98 -0.09 8.45 16 10 O -0.54 -10.72 16.30 5.56 0.09 -10.63 16 11 N -0.61 -9.47 3.32 -170.62 -0.57 -10.04 16 12 C 0.10 1.38 6.07 -2.95 -0.02 1.36 16 13 C -0.11 -1.66 4.88 -25.26 -0.12 -1.79 16 14 C -0.09 -1.55 0.55 -153.97 -0.09 -1.64 16 15 C 0.12 1.95 5.83 -2.75 -0.02 1.93 16 16 C -0.09 -1.41 4.65 -27.11 -0.13 -1.53 16 17 C -0.13 -2.06 5.92 -26.54 -0.16 -2.22 16 18 C 0.14 2.78 6.49 -3.71 -0.02 2.76 16 19 N -0.59 -13.57 2.60 -172.75 -0.45 -14.02 16 20 C -0.25 -6.41 9.60 -15.06 -0.14 -6.55 16 21 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 22 C 0.01 0.13 4.93 -17.43 -0.09 0.04 16 23 N -0.90 -24.93 11.18 55.49 0.62 -24.30 16 24 Si 0.90 20.50 29.59 -169.99 -5.03 15.47 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.19 4.19 3.93 -4.10 -0.02 4.17 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.02 7.65 -51.93 -0.40 0.62 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.11 1.29 7.65 -51.93 -0.40 0.89 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.68 7.67 -51.93 -0.40 1.29 16 40 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 41 H 0.06 0.86 8.00 -51.93 -0.42 0.45 16 42 H 0.08 1.39 7.94 -51.93 -0.41 0.98 16 43 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.93 7.40 -51.93 -0.38 0.55 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 49 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.09 2.25 5.70 -51.93 -0.30 1.96 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -31.88 403.44 -8.88 -40.75 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.56 Total: 1.07 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.66 Total: -0.37 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.01 Total: -53.92 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.28 Total: -9.08 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.88 -8.88 -40.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.453 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds