Wall clock time and date at job start Wed Apr 1 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30169 * 126.80255 * 2 1 4 4 O 1.20927 * 111.60582 * 180.24705 * 3 2 1 5 5 C 1.34043 * 111.56630 * 359.74721 * 4 3 2 6 6 C 1.50696 * 126.77976 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.44532 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00900 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46825 * 89.99745 * 8 7 5 10 10 O 1.21272 * 120.00279 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99644 * 179.97438 * 9 8 7 12 12 C 1.47093 * 125.62509 * 0.03284 * 11 9 8 13 13 C 1.54466 * 107.29576 * 180.97845 * 12 11 9 14 14 C 1.54349 * 102.86687 * 21.47244 * 13 12 11 15 15 C 1.47582 * 125.63007 * 179.71949 * 11 9 8 16 16 C 1.52075 * 110.60422 * 207.23650 * 14 13 12 17 17 C 1.53185 * 109.67614 * 295.83097 * 16 14 13 18 18 C 1.53190 * 109.27517 * 300.04344 * 17 16 14 19 19 N 1.46933 * 108.94297 * 55.31464 * 18 17 16 20 20 C 1.36942 * 120.71819 * 125.76554 * 19 18 17 21 21 H 1.07996 * 120.00153 * 332.36699 * 20 19 18 22 22 C 1.38809 * 120.00137 * 152.36224 * 20 19 18 23 23 N 1.31626 * 120.00021 * 343.23678 * 22 20 19 24 24 Si 1.86802 * 120.00329 * 163.23489 * 22 20 19 25 25 H 1.48505 * 109.46771 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47111 * 120.00199 * 24 22 20 27 27 H 1.48500 * 109.47032 * 240.00525 * 24 22 20 28 28 C 1.47111 * 118.56807 * 305.74930 * 19 18 17 29 29 H 1.08990 * 109.47527 * 270.16628 * 1 2 3 30 30 H 1.09001 * 109.46571 * 30.17280 * 1 2 3 31 31 H 1.09006 * 109.47192 * 150.16640 * 1 2 3 32 32 H 1.09000 * 109.46735 * 269.99949 * 6 5 4 33 33 H 1.09000 * 109.47289 * 29.99446 * 6 5 4 34 34 H 1.09002 * 109.47357 * 149.99545 * 6 5 4 35 35 H 1.08998 * 109.46561 * 330.00360 * 8 7 5 36 36 H 1.08996 * 109.47115 * 210.00391 * 8 7 5 37 37 H 1.09000 * 109.87367 * 300.39451 * 12 11 9 38 38 H 1.08992 * 109.88014 * 61.55251 * 12 11 9 39 39 H 1.08998 * 110.73477 * 139.82217 * 13 12 11 40 40 H 1.09005 * 110.73048 * 263.12724 * 13 12 11 41 41 H 1.09003 * 110.37492 * 275.55597 * 15 11 9 42 42 H 1.09004 * 110.37215 * 37.90223 * 15 11 9 43 43 H 1.09001 * 109.43798 * 55.89774 * 16 14 13 44 44 H 1.09005 * 109.43139 * 175.76962 * 16 14 13 45 45 H 1.09004 * 109.50031 * 180.10956 * 17 16 14 46 46 H 1.08994 * 109.53681 * 60.00989 * 17 16 14 47 47 H 1.09003 * 109.56081 * 295.47371 * 18 17 16 48 48 H 1.09000 * 109.56100 * 175.15082 * 18 17 16 49 49 H 0.96993 * 119.99901 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.57470 * 292.44206 * 28 19 18 51 51 H 1.08997 * 109.57568 * 172.05921 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0048 5 6 3.6025 -0.6069 -0.0033 6 6 4.9021 -1.3697 -0.0075 7 6 2.3539 -1.1321 0.0039 8 6 1.9590 -2.5864 0.0079 9 6 1.8348 -3.0693 1.4300 10 8 2.0458 -2.3075 2.3497 11 7 1.4884 -4.3476 1.6798 12 6 1.2051 -5.3727 0.6636 13 6 0.8295 -6.6703 1.4127 14 6 0.3926 -6.1525 2.7995 15 6 1.3369 -4.9516 3.0178 16 6 0.6204 -7.2149 3.8635 17 6 -0.2731 -8.4269 3.5819 18 6 -1.7409 -7.9888 3.6026 19 7 -1.9235 -6.8876 2.6471 20 6 -2.8762 -6.9632 1.6663 21 1 -3.1856 -7.9260 1.2871 22 6 -3.4442 -5.8026 1.1595 23 7 -3.3298 -4.6705 1.8212 24 14 -4.3712 -5.8470 -0.4617 25 1 -4.3558 -7.2299 -1.0029 26 1 -5.7753 -5.4168 -0.2410 27 1 -3.7188 -4.9297 -1.4303 28 6 -1.0611 -5.7018 2.7671 29 1 -0.3634 0.0030 1.0275 30 1 -0.3632 0.8885 -0.5165 31 1 -0.3634 -0.8915 -0.5113 32 1 5.2111 -1.5552 -1.0362 33 1 5.6681 -0.7852 0.5021 34 1 4.7672 -2.3203 0.5085 35 1 2.7200 -3.1709 -0.5091 36 1 1.0023 -2.7045 -0.5008 37 1 0.3729 -5.0528 0.0365 38 1 2.0903 -5.5416 0.0507 39 1 0.0050 -7.1792 0.9134 40 1 1.6937 -7.3287 1.5012 41 1 2.3031 -5.2883 3.3938 42 1 0.8882 -4.2372 3.7081 43 1 1.6656 -7.5237 3.8498 44 1 0.3768 -6.8046 4.8436 45 1 -0.1090 -9.1856 4.3472 46 1 -0.0301 -8.8392 2.6027 47 1 -2.0068 -7.6508 4.6042 48 1 -2.3761 -8.8277 3.3183 49 1 -3.7264 -3.8594 1.4669 50 1 -1.2989 -5.1689 3.6877 51 1 -1.2211 -5.0458 1.9114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040524060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:07 Heat of formation + Delta-G solvation = 20.569997 kcal Electronic energy + Delta-G solvation = -32414.545107 eV Core-core repulsion = 28316.590309 eV Total energy + Delta-G solvation = -4097.954798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.95429 -41.46227 -39.79794 -37.25839 -36.28258 -34.92141 -34.62916 -32.95121 -31.72638 -30.85512 -30.39296 -29.67673 -28.26034 -27.33448 -26.65757 -24.14460 -23.83782 -23.03189 -22.10769 -21.19408 -20.30189 -19.58149 -18.81465 -18.43566 -18.04009 -17.80469 -17.14320 -16.78828 -16.26238 -15.73193 -15.62506 -15.36885 -15.18243 -15.02050 -14.73701 -14.44114 -14.39145 -14.09979 -13.99359 -13.94121 -13.76150 -13.64306 -13.48057 -13.43633 -13.32692 -13.14607 -12.94624 -12.87990 -12.67199 -12.49468 -12.30194 -12.05182 -11.95771 -11.77550 -11.59288 -11.31257 -11.20651 -11.06525 -10.97921 -10.77572 -10.51229 -10.09240 -9.58436 -8.63852 -7.83248 -5.28385 0.47005 1.09603 1.45703 1.49855 1.58927 1.61330 2.08417 2.23462 2.53127 3.15484 3.28948 3.44981 3.50072 3.71250 3.73338 3.78897 3.92666 4.00388 4.05784 4.30488 4.35571 4.38259 4.40196 4.41536 4.50109 4.51299 4.56508 4.64454 4.66672 4.70170 4.74652 4.75667 4.84005 4.86050 4.88637 4.97496 5.04922 5.07836 5.11131 5.20319 5.23414 5.26756 5.32359 5.43834 5.48543 5.52554 5.65447 5.71915 5.81024 6.41874 6.57512 7.15540 7.18271 7.27586 7.90428 8.43138 9.22545 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.003649 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.064806 B = 7670.475342 C = 9283.861201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.018 3.982 3 N -0.399 5.399 4 O 0.086 5.914 5 C -0.013 4.013 6 C -0.071 4.071 7 C -0.201 4.201 8 C -0.049 4.049 9 C 0.525 3.475 10 O -0.587 6.587 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.104 4.104 14 C -0.088 4.088 15 C 0.123 3.877 16 C -0.091 4.091 17 C -0.119 4.119 18 C 0.134 3.866 19 N -0.604 5.604 20 C -0.251 4.251 21 H 0.069 0.931 22 C -0.045 4.045 23 N -0.936 5.936 24 Si 0.956 3.044 25 H -0.263 1.263 26 H -0.302 1.302 27 H -0.287 1.287 28 C 0.206 3.794 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.002 0.998 48 H 0.052 0.948 49 H 0.245 0.755 50 H -0.033 1.033 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.745 -2.882 -6.166 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 N -0.108 5.108 4 O 0.024 5.976 5 C -0.076 4.076 6 C -0.128 4.128 7 C -0.205 4.205 8 C -0.088 4.088 9 C 0.315 3.685 10 O -0.467 6.467 11 N -0.343 5.343 12 C -0.021 4.021 13 C -0.141 4.141 14 C -0.090 4.090 15 C 0.000 4.000 16 C -0.129 4.129 17 C -0.158 4.158 18 C 0.009 3.991 19 N -0.327 5.327 20 C -0.382 4.382 21 H 0.087 0.913 22 C -0.241 4.241 23 N -0.583 5.583 24 Si 0.785 3.215 25 H -0.187 1.187 26 H -0.229 1.229 27 H -0.214 1.214 28 C 0.080 3.920 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.163 0.837 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.020 0.980 48 H 0.071 0.929 49 H 0.055 0.945 50 H -0.015 1.015 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.585 -0.973 -5.756 18.529 hybrid contribution -1.701 0.063 -0.130 1.707 sum 15.885 -0.910 -5.887 16.965 Atomic orbital electron populations 1.20201 0.85530 1.04588 1.03127 1.23756 0.99597 0.89078 1.01601 1.73767 0.89878 1.24699 1.22471 1.84716 1.21163 1.23554 1.68161 1.24946 0.99438 0.83154 1.00101 1.20578 0.88026 0.98285 1.05946 1.20495 0.92226 0.96444 1.11359 1.19901 1.06097 0.89755 0.93078 1.20638 0.75989 0.79939 0.91952 1.90678 1.52819 1.54980 1.48246 1.48598 1.67117 1.09792 1.08841 1.22291 1.01408 0.87522 0.90910 1.22477 1.01778 0.95906 0.93954 1.21691 0.95431 0.94676 0.97183 1.22165 0.99170 0.94065 0.84627 1.21210 1.00435 0.94618 0.96610 1.21880 0.94562 0.97128 1.02190 1.21128 0.96240 0.90607 0.91169 1.44318 1.37935 1.17164 1.33299 1.19505 1.14505 0.92601 1.11545 0.91344 1.25683 0.99895 0.96370 1.02117 1.70229 1.49389 1.00041 1.38606 0.85376 0.77472 0.78044 0.80633 1.18668 1.22947 1.21362 1.20207 0.86291 0.88240 0.97274 0.91424 0.89448 0.89140 0.86289 0.88545 0.88739 0.83679 0.87029 0.92693 0.87378 0.90750 0.88225 0.89371 0.94299 0.89368 0.93558 0.90127 0.91332 0.98042 0.92901 0.94537 1.01463 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.19 10.39 71.24 0.74 -1.45 16 2 C 0.02 0.56 7.33 43.58 0.32 0.88 16 3 N -0.40 -13.07 12.07 -49.55 -0.60 -13.67 16 4 O 0.09 2.47 11.20 71.60 0.80 3.28 16 5 C -0.01 -0.30 7.49 25.04 0.19 -0.11 16 6 C -0.07 -0.92 10.25 71.23 0.73 -0.19 16 7 C -0.20 -5.45 4.82 -19.73 -0.10 -5.54 16 8 C -0.05 -1.13 5.14 29.10 0.15 -0.98 16 9 C 0.52 16.54 7.84 87.66 0.69 17.23 16 10 O -0.59 -23.74 16.30 -3.01 -0.05 -23.79 16 11 N -0.61 -18.17 3.32 -812.10 -2.69 -20.86 16 12 C 0.10 2.46 6.07 86.76 0.53 2.99 16 13 C -0.10 -2.75 4.88 31.55 0.15 -2.60 16 14 C -0.09 -2.84 0.55 -51.83 -0.03 -2.87 16 15 C 0.12 3.90 5.83 86.62 0.50 4.40 16 16 C -0.09 -2.50 4.65 30.35 0.14 -2.36 16 17 C -0.12 -3.35 5.92 30.72 0.18 -3.17 16 18 C 0.13 5.18 6.49 86.36 0.56 5.74 16 19 N -0.60 -28.37 2.60 -700.45 -1.82 -30.19 16 20 C -0.25 -12.98 9.60 84.03 0.81 -12.17 16 21 H 0.07 3.44 7.88 -2.91 -0.02 3.42 16 22 C -0.05 -2.43 4.93 84.86 0.42 -2.01 16 23 N -0.94 -54.49 11.18 21.65 0.24 -54.25 16 24 Si 0.96 42.85 29.59 68.60 2.03 44.88 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 28 C 0.21 9.41 3.93 86.01 0.34 9.75 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.09 2.33 7.65 -2.38 -0.02 2.32 16 32 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.16 8.05 -2.39 -0.02 1.15 16 35 H 0.15 2.07 8.08 -2.39 -0.02 2.05 16 36 H 0.11 2.52 7.65 -2.39 -0.02 2.50 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 2.39 7.67 -2.39 -0.02 2.37 16 40 H 0.10 1.96 7.98 -2.38 -0.02 1.94 16 41 H 0.09 2.32 8.00 -2.39 -0.02 2.30 16 42 H 0.04 1.50 7.94 -2.38 -0.02 1.49 16 43 H 0.09 1.82 8.10 -2.39 -0.02 1.81 16 44 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.07 1.86 7.40 -2.39 -0.02 1.84 16 47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 49 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 50 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 51 H 0.06 3.08 5.70 -2.39 -0.01 3.07 16 Total: -1.00 -75.54 403.44 5.14 -70.39 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.91 Total: 16.66 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.32 Total: 7.56 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -4.87 Total: -118.97 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.75 Total: -20.52 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -75.54 5.14 -70.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.965 kcal (2) G-P(sol) polarization free energy of solvation -75.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds