Wall clock time and date at job start Wed Apr 1 2020 04:41:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30169 * 126.80255 * 2 1
4 4 O 1.20927 * 111.60582 * 180.24705 * 3 2 1
5 5 C 1.34043 * 111.56630 * 359.74721 * 4 3 2
6 6 C 1.50696 * 126.77976 * 180.02562 * 5 4 3
7 7 C 1.35455 * 106.44532 * 359.97438 * 5 4 3
8 8 C 1.50701 * 128.00900 * 179.97438 * 7 5 4
9 9 C 1.50700 * 109.46825 * 89.99745 * 8 7 5
10 10 O 1.21272 * 120.00279 * 0.02562 * 9 8 7
11 11 N 1.34777 * 119.99644 * 179.97438 * 9 8 7
12 12 C 1.47093 * 125.62509 * 0.03284 * 11 9 8
13 13 C 1.54466 * 107.29576 * 180.97845 * 12 11 9
14 14 C 1.54349 * 102.86687 * 21.47244 * 13 12 11
15 15 C 1.47582 * 125.63007 * 179.71949 * 11 9 8
16 16 C 1.52075 * 110.60422 * 207.23650 * 14 13 12
17 17 C 1.53185 * 109.67614 * 295.83097 * 16 14 13
18 18 C 1.53190 * 109.27517 * 300.04344 * 17 16 14
19 19 N 1.46933 * 108.94297 * 55.31464 * 18 17 16
20 20 C 1.36942 * 120.71819 * 125.76554 * 19 18 17
21 21 H 1.07996 * 120.00153 * 332.36699 * 20 19 18
22 22 C 1.38809 * 120.00137 * 152.36224 * 20 19 18
23 23 N 1.31626 * 120.00021 * 343.23678 * 22 20 19
24 24 Si 1.86802 * 120.00329 * 163.23489 * 22 20 19
25 25 H 1.48505 * 109.46771 * 359.97438 * 24 22 20
26 26 H 1.48497 * 109.47111 * 120.00199 * 24 22 20
27 27 H 1.48500 * 109.47032 * 240.00525 * 24 22 20
28 28 C 1.47111 * 118.56807 * 305.74930 * 19 18 17
29 29 H 1.08990 * 109.47527 * 270.16628 * 1 2 3
30 30 H 1.09001 * 109.46571 * 30.17280 * 1 2 3
31 31 H 1.09006 * 109.47192 * 150.16640 * 1 2 3
32 32 H 1.09000 * 109.46735 * 269.99949 * 6 5 4
33 33 H 1.09000 * 109.47289 * 29.99446 * 6 5 4
34 34 H 1.09002 * 109.47357 * 149.99545 * 6 5 4
35 35 H 1.08998 * 109.46561 * 330.00360 * 8 7 5
36 36 H 1.08996 * 109.47115 * 210.00391 * 8 7 5
37 37 H 1.09000 * 109.87367 * 300.39451 * 12 11 9
38 38 H 1.08992 * 109.88014 * 61.55251 * 12 11 9
39 39 H 1.08998 * 110.73477 * 139.82217 * 13 12 11
40 40 H 1.09005 * 110.73048 * 263.12724 * 13 12 11
41 41 H 1.09003 * 110.37492 * 275.55597 * 15 11 9
42 42 H 1.09004 * 110.37215 * 37.90223 * 15 11 9
43 43 H 1.09001 * 109.43798 * 55.89774 * 16 14 13
44 44 H 1.09005 * 109.43139 * 175.76962 * 16 14 13
45 45 H 1.09004 * 109.50031 * 180.10956 * 17 16 14
46 46 H 1.08994 * 109.53681 * 60.00989 * 17 16 14
47 47 H 1.09003 * 109.56081 * 295.47371 * 18 17 16
48 48 H 1.09000 * 109.56100 * 175.15082 * 18 17 16
49 49 H 0.96993 * 119.99901 * 179.97438 * 23 22 20
50 50 H 1.09003 * 109.57470 * 292.44206 * 28 19 18
51 51 H 1.08997 * 109.57568 * 172.05921 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4538 0.7253 -0.0048
5 6 3.6025 -0.6069 -0.0033
6 6 4.9021 -1.3697 -0.0075
7 6 2.3539 -1.1321 0.0039
8 6 1.9590 -2.5864 0.0079
9 6 1.8348 -3.0693 1.4300
10 8 2.0458 -2.3075 2.3497
11 7 1.4884 -4.3476 1.6798
12 6 1.2051 -5.3727 0.6636
13 6 0.8295 -6.6703 1.4127
14 6 0.3926 -6.1525 2.7995
15 6 1.3369 -4.9516 3.0178
16 6 0.6204 -7.2149 3.8635
17 6 -0.2731 -8.4269 3.5819
18 6 -1.7409 -7.9888 3.6026
19 7 -1.9235 -6.8876 2.6471
20 6 -2.8762 -6.9632 1.6663
21 1 -3.1856 -7.9260 1.2871
22 6 -3.4442 -5.8026 1.1595
23 7 -3.3298 -4.6705 1.8212
24 14 -4.3712 -5.8470 -0.4617
25 1 -4.3558 -7.2299 -1.0029
26 1 -5.7753 -5.4168 -0.2410
27 1 -3.7188 -4.9297 -1.4303
28 6 -1.0611 -5.7018 2.7671
29 1 -0.3634 0.0030 1.0275
30 1 -0.3632 0.8885 -0.5165
31 1 -0.3634 -0.8915 -0.5113
32 1 5.2111 -1.5552 -1.0362
33 1 5.6681 -0.7852 0.5021
34 1 4.7672 -2.3203 0.5085
35 1 2.7200 -3.1709 -0.5091
36 1 1.0023 -2.7045 -0.5008
37 1 0.3729 -5.0528 0.0365
38 1 2.0903 -5.5416 0.0507
39 1 0.0050 -7.1792 0.9134
40 1 1.6937 -7.3287 1.5012
41 1 2.3031 -5.2883 3.3938
42 1 0.8882 -4.2372 3.7081
43 1 1.6656 -7.5237 3.8498
44 1 0.3768 -6.8046 4.8436
45 1 -0.1090 -9.1856 4.3472
46 1 -0.0301 -8.8392 2.6027
47 1 -2.0068 -7.6508 4.6042
48 1 -2.3761 -8.8277 3.3183
49 1 -3.7264 -3.8594 1.4669
50 1 -1.2989 -5.1689 3.6877
51 1 -1.2211 -5.0458 1.9114
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001040524060.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:07
Heat of formation + Delta-G solvation = 20.569997 kcal
Electronic energy + Delta-G solvation = -32414.545107 eV
Core-core repulsion = 28316.590309 eV
Total energy + Delta-G solvation = -4097.954798 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-45.95429 -41.46227 -39.79794 -37.25839 -36.28258 -34.92141 -34.62916 -32.95121
-31.72638 -30.85512 -30.39296 -29.67673 -28.26034 -27.33448 -26.65757 -24.14460
-23.83782 -23.03189 -22.10769 -21.19408 -20.30189 -19.58149 -18.81465 -18.43566
-18.04009 -17.80469 -17.14320 -16.78828 -16.26238 -15.73193 -15.62506 -15.36885
-15.18243 -15.02050 -14.73701 -14.44114 -14.39145 -14.09979 -13.99359 -13.94121
-13.76150 -13.64306 -13.48057 -13.43633 -13.32692 -13.14607 -12.94624 -12.87990
-12.67199 -12.49468 -12.30194 -12.05182 -11.95771 -11.77550 -11.59288 -11.31257
-11.20651 -11.06525 -10.97921 -10.77572 -10.51229 -10.09240 -9.58436 -8.63852
-7.83248 -5.28385 0.47005 1.09603 1.45703 1.49855 1.58927 1.61330
2.08417 2.23462 2.53127 3.15484 3.28948 3.44981 3.50072 3.71250
3.73338 3.78897 3.92666 4.00388 4.05784 4.30488 4.35571 4.38259
4.40196 4.41536 4.50109 4.51299 4.56508 4.64454 4.66672 4.70170
4.74652 4.75667 4.84005 4.86050 4.88637 4.97496 5.04922 5.07836
5.11131 5.20319 5.23414 5.26756 5.32359 5.43834 5.48543 5.52554
5.65447 5.71915 5.81024 6.41874 6.57512 7.15540 7.18271 7.27586
7.90428 8.43138 9.22545
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011577 B = 0.003649 C = 0.003015
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2418.064806 B = 7670.475342 C = 9283.861201
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.018 3.982
3 N -0.399 5.399
4 O 0.086 5.914
5 C -0.013 4.013
6 C -0.071 4.071
7 C -0.201 4.201
8 C -0.049 4.049
9 C 0.525 3.475
10 O -0.587 6.587
11 N -0.611 5.611
12 C 0.101 3.899
13 C -0.104 4.104
14 C -0.088 4.088
15 C 0.123 3.877
16 C -0.091 4.091
17 C -0.119 4.119
18 C 0.134 3.866
19 N -0.604 5.604
20 C -0.251 4.251
21 H 0.069 0.931
22 C -0.045 4.045
23 N -0.936 5.936
24 Si 0.956 3.044
25 H -0.263 1.263
26 H -0.302 1.302
27 H -0.287 1.287
28 C 0.206 3.794
29 H 0.067 0.933
30 H 0.087 0.913
31 H 0.090 0.910
32 H 0.119 0.881
33 H 0.096 0.904
34 H 0.094 0.906
35 H 0.145 0.855
36 H 0.112 0.888
37 H 0.055 0.945
38 H 0.108 0.892
39 H 0.074 0.926
40 H 0.099 0.901
41 H 0.088 0.912
42 H 0.038 0.962
43 H 0.088 0.912
44 H 0.046 0.954
45 H 0.080 0.920
46 H 0.068 0.932
47 H 0.002 0.998
48 H 0.052 0.948
49 H 0.245 0.755
50 H -0.033 1.033
51 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.745 -2.882 -6.166 19.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.140 4.140
3 N -0.108 5.108
4 O 0.024 5.976
5 C -0.076 4.076
6 C -0.128 4.128
7 C -0.205 4.205
8 C -0.088 4.088
9 C 0.315 3.685
10 O -0.467 6.467
11 N -0.343 5.343
12 C -0.021 4.021
13 C -0.141 4.141
14 C -0.090 4.090
15 C 0.000 4.000
16 C -0.129 4.129
17 C -0.158 4.158
18 C 0.009 3.991
19 N -0.327 5.327
20 C -0.382 4.382
21 H 0.087 0.913
22 C -0.241 4.241
23 N -0.583 5.583
24 Si 0.785 3.215
25 H -0.187 1.187
26 H -0.229 1.229
27 H -0.214 1.214
28 C 0.080 3.920
29 H 0.086 0.914
30 H 0.106 0.894
31 H 0.109 0.891
32 H 0.137 0.863
33 H 0.115 0.885
34 H 0.113 0.887
35 H 0.163 0.837
36 H 0.130 0.870
37 H 0.073 0.927
38 H 0.126 0.874
39 H 0.092 0.908
40 H 0.118 0.882
41 H 0.106 0.894
42 H 0.057 0.943
43 H 0.106 0.894
44 H 0.064 0.936
45 H 0.099 0.901
46 H 0.087 0.913
47 H 0.020 0.980
48 H 0.071 0.929
49 H 0.055 0.945
50 H -0.015 1.015
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 17.585 -0.973 -5.756 18.529
hybrid contribution -1.701 0.063 -0.130 1.707
sum 15.885 -0.910 -5.887 16.965
Atomic orbital electron populations
1.20201 0.85530 1.04588 1.03127 1.23756 0.99597 0.89078 1.01601
1.73767 0.89878 1.24699 1.22471 1.84716 1.21163 1.23554 1.68161
1.24946 0.99438 0.83154 1.00101 1.20578 0.88026 0.98285 1.05946
1.20495 0.92226 0.96444 1.11359 1.19901 1.06097 0.89755 0.93078
1.20638 0.75989 0.79939 0.91952 1.90678 1.52819 1.54980 1.48246
1.48598 1.67117 1.09792 1.08841 1.22291 1.01408 0.87522 0.90910
1.22477 1.01778 0.95906 0.93954 1.21691 0.95431 0.94676 0.97183
1.22165 0.99170 0.94065 0.84627 1.21210 1.00435 0.94618 0.96610
1.21880 0.94562 0.97128 1.02190 1.21128 0.96240 0.90607 0.91169
1.44318 1.37935 1.17164 1.33299 1.19505 1.14505 0.92601 1.11545
0.91344 1.25683 0.99895 0.96370 1.02117 1.70229 1.49389 1.00041
1.38606 0.85376 0.77472 0.78044 0.80633 1.18668 1.22947 1.21362
1.20207 0.86291 0.88240 0.97274 0.91424 0.89448 0.89140 0.86289
0.88545 0.88739 0.83679 0.87029 0.92693 0.87378 0.90750 0.88225
0.89371 0.94299 0.89368 0.93558 0.90127 0.91332 0.98042 0.92901
0.94537 1.01463 0.92265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.19 10.39 71.24 0.74 -1.45 16
2 C 0.02 0.56 7.33 43.58 0.32 0.88 16
3 N -0.40 -13.07 12.07 -49.55 -0.60 -13.67 16
4 O 0.09 2.47 11.20 71.60 0.80 3.28 16
5 C -0.01 -0.30 7.49 25.04 0.19 -0.11 16
6 C -0.07 -0.92 10.25 71.23 0.73 -0.19 16
7 C -0.20 -5.45 4.82 -19.73 -0.10 -5.54 16
8 C -0.05 -1.13 5.14 29.10 0.15 -0.98 16
9 C 0.52 16.54 7.84 87.66 0.69 17.23 16
10 O -0.59 -23.74 16.30 -3.01 -0.05 -23.79 16
11 N -0.61 -18.17 3.32 -812.10 -2.69 -20.86 16
12 C 0.10 2.46 6.07 86.76 0.53 2.99 16
13 C -0.10 -2.75 4.88 31.55 0.15 -2.60 16
14 C -0.09 -2.84 0.55 -51.83 -0.03 -2.87 16
15 C 0.12 3.90 5.83 86.62 0.50 4.40 16
16 C -0.09 -2.50 4.65 30.35 0.14 -2.36 16
17 C -0.12 -3.35 5.92 30.72 0.18 -3.17 16
18 C 0.13 5.18 6.49 86.36 0.56 5.74 16
19 N -0.60 -28.37 2.60 -700.45 -1.82 -30.19 16
20 C -0.25 -12.98 9.60 84.03 0.81 -12.17 16
21 H 0.07 3.44 7.88 -2.91 -0.02 3.42 16
22 C -0.05 -2.43 4.93 84.86 0.42 -2.01 16
23 N -0.94 -54.49 11.18 21.65 0.24 -54.25 16
24 Si 0.96 42.85 29.59 68.60 2.03 44.88 16
25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16
27 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16
28 C 0.21 9.41 3.93 86.01 0.34 9.75 16
29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
31 H 0.09 2.33 7.65 -2.38 -0.02 2.32 16
32 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16
33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
34 H 0.09 1.16 8.05 -2.39 -0.02 1.15 16
35 H 0.15 2.07 8.08 -2.39 -0.02 2.05 16
36 H 0.11 2.52 7.65 -2.39 -0.02 2.50 16
37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16
39 H 0.07 2.39 7.67 -2.39 -0.02 2.37 16
40 H 0.10 1.96 7.98 -2.38 -0.02 1.94 16
41 H 0.09 2.32 8.00 -2.39 -0.02 2.30 16
42 H 0.04 1.50 7.94 -2.38 -0.02 1.49 16
43 H 0.09 1.82 8.10 -2.39 -0.02 1.81 16
44 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16
45 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16
46 H 0.07 1.86 7.40 -2.39 -0.02 1.84 16
47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16
48 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16
49 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16
50 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16
51 H 0.06 3.08 5.70 -2.39 -0.01 3.07 16
Total: -1.00 -75.54 403.44 5.14 -70.39
By element:
Atomic # 1 Polarization: 15.74 SS G_CDS: 0.91 Total: 16.66 kcal
Atomic # 6 Polarization: 1.24 SS G_CDS: 6.32 Total: 7.56 kcal
Atomic # 7 Polarization: -114.10 SS G_CDS: -4.87 Total: -118.97 kcal
Atomic # 8 Polarization: -21.27 SS G_CDS: 0.75 Total: -20.52 kcal
Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal
Total: -75.54 5.14 -70.39 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040524060.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.965 kcal
(2) G-P(sol) polarization free energy of solvation -75.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.427 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds