Wall clock time and date at job start Wed Apr 1 2020 04:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30175 * 126.80390 * 2 1 4 4 O 1.20917 * 111.60336 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.57122 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.77981 * 179.97438 * 5 4 3 7 7 C 1.35456 * 106.44532 * 0.23942 * 5 4 3 8 8 C 1.50701 * 128.00822 * 179.73544 * 7 5 4 9 9 C 1.53001 * 109.46749 * 90.00362 * 8 7 5 10 10 C 1.50701 * 109.46749 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00560 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.47571 * 125.67762 * 359.69730 * 12 10 9 14 14 C 1.55431 * 104.92410 * 156.10847 * 13 12 10 15 15 C 1.53503 * 101.29538 * 35.61798 * 14 13 12 16 16 C 1.53476 * 111.80586 * 88.09243 * 15 14 13 17 17 C 1.54625 * 102.74244 * 154.35439 * 16 15 14 18 18 N 1.47147 * 107.34579 * 339.34611 * 17 16 15 19 19 C 1.36946 * 125.60346 * 179.10862 * 18 17 16 20 20 H 1.08000 * 120.00359 * 174.74215 * 19 18 17 21 21 C 1.38819 * 119.99419 * 354.73628 * 19 18 17 22 22 N 1.31620 * 120.00090 * 7.05613 * 21 19 18 23 23 Si 1.86801 * 119.99686 * 187.05370 * 21 19 18 24 24 H 1.48499 * 109.46976 * 94.99077 * 23 21 19 25 25 H 1.48496 * 109.47167 * 214.98980 * 23 21 19 26 26 H 1.48501 * 109.46968 * 334.98858 * 23 21 19 27 27 C 1.47753 * 108.80406 * 359.08555 * 18 17 16 28 28 C 1.47445 * 125.67520 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.46983 * 89.97298 * 1 2 3 30 30 H 1.09001 * 109.47321 * 209.97085 * 1 2 3 31 31 H 1.08998 * 109.46972 * 329.97677 * 1 2 3 32 32 H 1.08995 * 109.46607 * 0.02610 * 6 5 4 33 33 H 1.09001 * 109.46801 * 120.02576 * 6 5 4 34 34 H 1.09001 * 109.46594 * 240.02515 * 6 5 4 35 35 H 1.08990 * 109.47106 * 210.00204 * 8 7 5 36 36 H 1.09001 * 109.47013 * 330.00437 * 8 7 5 37 37 H 1.09001 * 109.47556 * 299.99573 * 9 8 7 38 38 H 1.09001 * 109.47302 * 60.00252 * 9 8 7 39 39 H 1.08997 * 110.33510 * 275.09558 * 13 12 10 40 40 H 1.09012 * 110.32893 * 37.31420 * 13 12 10 41 41 H 1.08998 * 111.23280 * 277.56366 * 14 13 12 42 42 H 1.09000 * 110.97420 * 153.56409 * 14 13 12 43 43 H 1.09000 * 110.76058 * 272.67017 * 16 15 14 44 44 H 1.08996 * 110.75790 * 35.86038 * 16 15 14 45 45 H 1.09003 * 109.87022 * 98.78759 * 17 16 15 46 46 H 1.09004 * 109.87233 * 219.90976 * 17 16 15 47 47 H 0.96996 * 119.99655 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.40095 * 263.54149 * 27 18 17 49 49 H 1.08998 * 110.40000 * 141.13693 * 27 18 17 50 50 H 1.09007 * 109.99595 * 301.51630 * 28 12 10 51 51 H 1.09003 * 109.99849 * 62.80725 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 -0.0015 6 6 4.9022 -1.3696 -0.0029 7 6 2.3539 -1.1321 -0.0070 8 6 1.9590 -2.5864 -0.0157 9 6 1.8222 -3.0863 1.4239 10 6 1.4279 -4.5408 1.4152 11 8 1.2721 -5.1206 0.3614 12 7 1.2494 -5.1975 2.5785 13 6 1.4120 -4.6199 3.9267 14 6 0.5372 -5.5111 4.8521 15 6 0.7316 -6.8921 4.2109 16 6 1.9580 -7.6178 4.7809 17 6 1.6075 -9.1071 4.5572 18 7 0.1476 -9.1948 4.3957 19 6 -0.5610 -10.3428 4.1606 20 1 -1.6405 -10.3167 4.1411 21 6 0.1084 -11.5401 3.9472 22 7 1.4133 -11.6021 4.1073 23 14 -0.8430 -13.0631 3.4327 24 1 -0.8108 -13.1906 1.9535 25 1 -0.2233 -14.2648 4.0467 26 1 -2.2513 -12.9446 3.8888 27 6 -0.4285 -7.8408 4.5295 28 6 0.8647 -6.6143 2.7159 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 5.7356 -0.6672 -0.0025 33 1 4.9558 -1.9976 0.8865 34 1 4.9549 -1.9958 -0.8935 35 1 1.0061 -2.7010 -0.5322 36 1 2.7238 -3.1675 -0.5310 37 1 2.7752 -2.9717 1.9404 38 1 1.0574 -2.5052 1.9392 39 1 2.4570 -4.6625 4.2335 40 1 1.0533 -3.5906 3.9435 41 1 -0.5091 -5.2077 4.8182 42 1 0.9132 -5.4982 5.8752 43 1 2.8584 -7.3459 4.2300 44 1 2.0763 -7.4012 5.8425 45 1 2.1024 -9.4731 3.6576 46 1 1.9208 -9.6951 5.4199 47 1 1.8809 -12.4388 3.9586 48 1 -0.7839 -7.6779 5.5470 49 1 -1.2404 -7.7011 3.8158 50 1 -0.0882 -6.7918 2.2173 51 1 1.6354 -7.2533 2.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041824637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:27 Heat of formation + Delta-G solvation = 41.231593 kcal Electronic energy + Delta-G solvation = -30795.371299 eV Core-core repulsion = 26698.312455 eV Total energy + Delta-G solvation = -4097.058844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.19693 -40.33002 -38.59249 -36.15630 -35.66034 -34.07837 -32.78775 -31.99056 -30.58295 -29.11687 -28.98911 -28.58175 -27.98858 -26.23114 -24.81071 -23.67561 -22.54501 -21.58354 -20.39264 -20.26039 -19.18445 -18.84026 -17.91935 -17.37899 -16.92747 -16.61205 -16.18120 -15.50088 -14.99261 -14.74406 -14.44193 -14.34574 -13.97304 -13.85337 -13.79122 -13.52542 -13.28674 -13.21573 -13.01815 -12.95314 -12.84869 -12.62760 -12.53460 -12.25196 -12.05399 -11.91549 -11.69601 -11.58429 -11.38527 -11.24209 -11.02804 -10.88523 -10.78933 -10.24959 -10.14334 -10.05537 -10.01598 -9.82988 -9.74919 -9.64478 -9.36544 -8.58908 -8.53198 -6.83654 -5.72831 -3.04993 1.16237 1.88703 2.65840 2.80526 3.04451 3.40818 3.46251 3.47786 3.88279 4.14303 4.33471 4.48751 4.50999 4.62845 4.70658 4.78190 4.85100 4.93198 4.97165 5.02557 5.06904 5.16651 5.18372 5.22568 5.29247 5.36296 5.40200 5.44275 5.46690 5.50326 5.59585 5.71010 5.77492 5.79007 5.84041 5.92336 5.97061 5.98504 6.14110 6.21788 6.27855 6.32823 6.48087 6.54052 6.69934 6.77693 7.53972 7.59363 7.61290 7.81707 8.00597 8.19753 8.24711 9.21235 9.81543 10.47396 11.39309 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.002027 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.041329 B =13810.820901 C =13876.448951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.029 4.029 6 C -0.075 4.075 7 C -0.198 4.198 8 C -0.025 4.025 9 C -0.129 4.129 10 C 0.524 3.476 11 O -0.541 6.541 12 N -0.618 5.618 13 C 0.101 3.899 14 C -0.118 4.118 15 C -0.083 4.083 16 C -0.131 4.131 17 C 0.177 3.823 18 N -0.606 5.606 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.151 3.849 28 C 0.133 3.867 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.252 0.748 48 H 0.024 0.976 49 H 0.040 0.960 50 H 0.070 0.930 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 23.748 -3.313 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.063 4.063 9 C -0.169 4.169 10 C 0.312 3.688 11 O -0.419 6.419 12 N -0.352 5.352 13 C -0.022 4.022 14 C -0.157 4.157 15 C -0.085 4.085 16 C -0.169 4.169 17 C 0.053 3.947 18 N -0.332 5.332 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.024 3.976 28 C 0.011 3.989 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.375 24.558 -3.987 25.261 hybrid contribution -0.489 -1.610 -0.133 1.688 sum 3.887 22.948 -4.120 23.636 Atomic orbital electron populations 1.20190 0.85952 1.03823 1.03548 1.23486 0.98951 0.88485 1.02566 1.73839 0.89318 1.23989 1.20421 1.84798 1.21635 1.22581 1.67917 1.24307 0.98311 0.83743 1.02890 1.20371 0.89915 0.98597 1.04394 1.20989 0.91595 0.97533 1.10112 1.19602 1.03766 0.87254 0.95719 1.21597 1.03624 0.92904 0.98802 1.20215 0.77442 0.88605 0.82503 1.90730 1.51626 1.69353 1.30175 1.48792 1.68227 1.12625 1.05566 1.22452 1.00222 0.97383 0.82189 1.22634 1.00007 0.94331 0.98695 1.21580 0.99011 0.94415 0.93448 1.22752 0.95579 0.99088 0.99474 1.21231 0.84366 0.88569 1.00577 1.44585 1.02551 1.01300 1.84781 1.19047 0.90232 0.85028 1.41389 0.90444 1.24813 0.95823 0.97859 1.01820 1.69971 1.06518 1.25539 1.54694 0.86136 0.78775 0.82655 0.78442 1.21592 1.21809 1.20647 1.21302 0.93113 0.85424 0.97730 1.21720 1.01147 0.80067 0.95921 0.90072 0.89889 0.90516 0.89859 0.89070 0.88976 0.89584 0.89592 0.89005 0.89000 0.91239 0.91030 0.90579 0.89696 0.92196 0.92047 0.93461 0.94092 0.93770 0.95861 0.94145 0.91169 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.39 36.01 0.37 -0.20 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.26 12.07 33.42 0.40 -3.85 16 4 O 0.10 0.99 11.20 17.19 0.19 1.19 16 5 C -0.03 -0.25 7.49 -35.30 -0.26 -0.51 16 6 C -0.08 -0.38 10.23 36.01 0.37 -0.01 16 7 C -0.20 -1.81 5.58 -104.42 -0.58 -2.40 16 8 C -0.03 -0.23 4.83 -27.88 -0.13 -0.36 16 9 C -0.13 -1.15 4.69 -27.88 -0.13 -1.28 16 10 C 0.52 7.00 7.85 -10.98 -0.09 6.92 16 11 O -0.54 -9.46 16.31 5.56 0.09 -9.37 16 12 N -0.62 -8.24 3.34 -170.75 -0.57 -8.81 16 13 C 0.10 1.00 6.67 -2.16 -0.01 0.99 16 14 C -0.12 -1.35 6.07 -25.18 -0.15 -1.50 16 15 C -0.08 -1.31 0.61 -154.07 -0.09 -1.41 16 16 C -0.13 -2.25 5.79 -25.63 -0.15 -2.39 16 17 C 0.18 4.16 5.37 -2.83 -0.02 4.14 16 18 N -0.61 -15.01 3.41 -170.56 -0.58 -15.59 16 19 C -0.23 -6.30 10.27 -15.05 -0.15 -6.46 16 20 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 21 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 22 N -0.92 -26.87 10.35 55.49 0.57 -26.29 16 23 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 27 C 0.15 2.94 6.26 -3.25 -0.02 2.92 16 28 C 0.13 2.21 6.07 -3.70 -0.02 2.19 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.70 7.86 -51.93 -0.41 0.29 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.54 7.49 -51.92 -0.39 0.15 16 41 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 43 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 44 H 0.06 0.96 7.80 -51.93 -0.40 0.56 16 45 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 46 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 49 H 0.04 0.79 7.66 -51.93 -0.40 0.39 16 50 H 0.07 1.28 7.58 -51.92 -0.39 0.89 16 51 H 0.07 1.39 7.79 -51.93 -0.40 0.99 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -33.85 408.87 -9.12 -42.97 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.59 Total: -3.49 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.77 Total: -0.02 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.17 Total: -54.55 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.28 Total: -8.18 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.85 -9.12 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041824637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.206 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds