Wall clock time and date at job start Wed Apr 1 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30175 * 126.80390 * 2 1 4 4 O 1.20917 * 111.60336 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.57122 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.77981 * 179.97438 * 5 4 3 7 7 C 1.35456 * 106.44532 * 0.23942 * 5 4 3 8 8 C 1.50701 * 128.00822 * 179.73544 * 7 5 4 9 9 C 1.53001 * 109.46749 * 90.00362 * 8 7 5 10 10 C 1.50701 * 109.46749 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00560 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99792 * 179.97438 * 10 9 8 13 13 C 1.47571 * 125.67762 * 359.69730 * 12 10 9 14 14 C 1.55431 * 104.92410 * 156.10847 * 13 12 10 15 15 C 1.53503 * 101.29538 * 35.61798 * 14 13 12 16 16 C 1.53476 * 111.80586 * 88.09243 * 15 14 13 17 17 C 1.54625 * 102.74244 * 154.35439 * 16 15 14 18 18 N 1.47147 * 107.34579 * 339.34611 * 17 16 15 19 19 C 1.36946 * 125.60346 * 179.10862 * 18 17 16 20 20 H 1.08000 * 120.00359 * 174.74215 * 19 18 17 21 21 C 1.38819 * 119.99419 * 354.73628 * 19 18 17 22 22 N 1.31620 * 120.00090 * 7.05613 * 21 19 18 23 23 Si 1.86801 * 119.99686 * 187.05370 * 21 19 18 24 24 H 1.48499 * 109.46976 * 94.99077 * 23 21 19 25 25 H 1.48496 * 109.47167 * 214.98980 * 23 21 19 26 26 H 1.48501 * 109.46968 * 334.98858 * 23 21 19 27 27 C 1.47753 * 108.80406 * 359.08555 * 18 17 16 28 28 C 1.47445 * 125.67520 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.46983 * 89.97298 * 1 2 3 30 30 H 1.09001 * 109.47321 * 209.97085 * 1 2 3 31 31 H 1.08998 * 109.46972 * 329.97677 * 1 2 3 32 32 H 1.08995 * 109.46607 * 0.02610 * 6 5 4 33 33 H 1.09001 * 109.46801 * 120.02576 * 6 5 4 34 34 H 1.09001 * 109.46594 * 240.02515 * 6 5 4 35 35 H 1.08990 * 109.47106 * 210.00204 * 8 7 5 36 36 H 1.09001 * 109.47013 * 330.00437 * 8 7 5 37 37 H 1.09001 * 109.47556 * 299.99573 * 9 8 7 38 38 H 1.09001 * 109.47302 * 60.00252 * 9 8 7 39 39 H 1.08997 * 110.33510 * 275.09558 * 13 12 10 40 40 H 1.09012 * 110.32893 * 37.31420 * 13 12 10 41 41 H 1.08998 * 111.23280 * 277.56366 * 14 13 12 42 42 H 1.09000 * 110.97420 * 153.56409 * 14 13 12 43 43 H 1.09000 * 110.76058 * 272.67017 * 16 15 14 44 44 H 1.08996 * 110.75790 * 35.86038 * 16 15 14 45 45 H 1.09003 * 109.87022 * 98.78759 * 17 16 15 46 46 H 1.09004 * 109.87233 * 219.90976 * 17 16 15 47 47 H 0.96996 * 119.99655 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.40095 * 263.54149 * 27 18 17 49 49 H 1.08998 * 110.40000 * 141.13693 * 27 18 17 50 50 H 1.09007 * 109.99595 * 301.51630 * 28 12 10 51 51 H 1.09003 * 109.99849 * 62.80725 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6068 -0.0015 6 6 4.9022 -1.3696 -0.0029 7 6 2.3539 -1.1321 -0.0070 8 6 1.9590 -2.5864 -0.0157 9 6 1.8222 -3.0863 1.4239 10 6 1.4279 -4.5408 1.4152 11 8 1.2721 -5.1206 0.3614 12 7 1.2494 -5.1975 2.5785 13 6 1.4120 -4.6199 3.9267 14 6 0.5372 -5.5111 4.8521 15 6 0.7316 -6.8921 4.2109 16 6 1.9580 -7.6178 4.7809 17 6 1.6075 -9.1071 4.5572 18 7 0.1476 -9.1948 4.3957 19 6 -0.5610 -10.3428 4.1606 20 1 -1.6405 -10.3167 4.1411 21 6 0.1084 -11.5401 3.9472 22 7 1.4133 -11.6021 4.1073 23 14 -0.8430 -13.0631 3.4327 24 1 -0.8108 -13.1906 1.9535 25 1 -0.2233 -14.2648 4.0467 26 1 -2.2513 -12.9446 3.8888 27 6 -0.4285 -7.8408 4.5295 28 6 0.8647 -6.6143 2.7159 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 5.7356 -0.6672 -0.0025 33 1 4.9558 -1.9976 0.8865 34 1 4.9549 -1.9958 -0.8935 35 1 1.0061 -2.7010 -0.5322 36 1 2.7238 -3.1675 -0.5310 37 1 2.7752 -2.9717 1.9404 38 1 1.0574 -2.5052 1.9392 39 1 2.4570 -4.6625 4.2335 40 1 1.0533 -3.5906 3.9435 41 1 -0.5091 -5.2077 4.8182 42 1 0.9132 -5.4982 5.8752 43 1 2.8584 -7.3459 4.2300 44 1 2.0763 -7.4012 5.8425 45 1 2.1024 -9.4731 3.6576 46 1 1.9208 -9.6951 5.4199 47 1 1.8809 -12.4388 3.9586 48 1 -0.7839 -7.6779 5.5470 49 1 -1.2404 -7.7011 3.8158 50 1 -0.0882 -6.7918 2.2173 51 1 1.6354 -7.2533 2.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041824637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:26 Heat of formation + Delta-G solvation = 20.960152 kcal Electronic energy + Delta-G solvation = -30796.250335 eV Core-core repulsion = 26698.312455 eV Total energy + Delta-G solvation = -4097.937880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.90409 -41.48862 -39.85024 -37.23858 -36.77934 -34.73046 -34.49075 -32.85346 -32.00674 -30.62769 -29.86435 -29.59224 -28.70728 -27.54408 -26.25181 -24.93202 -23.63326 -22.31119 -22.11833 -21.02796 -20.24506 -20.09790 -18.83481 -18.62652 -18.16574 -17.58664 -17.17256 -16.76295 -16.53340 -15.93721 -15.76585 -15.60418 -15.08333 -14.84320 -14.52993 -14.38145 -14.30306 -14.02600 -13.90583 -13.85515 -13.79468 -13.54313 -13.44792 -13.21496 -13.17321 -13.13181 -12.98204 -12.88715 -12.80205 -12.52993 -12.45954 -12.29012 -12.01412 -11.87053 -11.70150 -11.53455 -11.40679 -11.20341 -10.94960 -10.75928 -10.68371 -10.05004 -9.64872 -8.87590 -7.86542 -5.19638 0.50505 1.19310 1.43535 1.46160 1.54187 1.64753 1.99719 2.24117 2.48648 3.22739 3.30568 3.44696 3.54460 3.56519 3.67170 3.77010 3.83296 3.88442 4.02329 4.23654 4.28902 4.32098 4.34716 4.43336 4.47667 4.55011 4.64749 4.64818 4.70101 4.72220 4.72864 4.78962 4.82697 4.84872 4.93141 4.94407 5.00420 5.03812 5.05922 5.07050 5.10546 5.19230 5.26811 5.33814 5.36265 5.40358 5.47260 5.69320 5.78901 6.20381 6.59486 7.10831 7.17116 7.32639 7.78574 8.42635 9.24258 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.002027 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.041329 B =13810.820901 C =13876.448951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.400 5.400 4 O 0.082 5.918 5 C -0.021 4.021 6 C -0.078 4.078 7 C -0.208 4.208 8 C -0.018 4.018 9 C -0.115 4.115 10 C 0.520 3.480 11 O -0.593 6.593 12 N -0.617 5.617 13 C 0.100 3.900 14 C -0.108 4.108 15 C -0.072 4.072 16 C -0.111 4.111 17 C 0.184 3.816 18 N -0.629 5.629 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.973 3.027 24 H -0.291 1.291 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.145 3.855 28 C 0.139 3.861 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.003 0.997 46 H 0.005 0.995 47 H 0.246 0.754 48 H 0.040 0.960 49 H 0.035 0.965 50 H 0.044 0.956 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 26.400 -1.906 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 N -0.110 5.110 4 O 0.020 5.980 5 C -0.084 4.084 6 C -0.135 4.135 7 C -0.212 4.212 8 C -0.056 4.056 9 C -0.154 4.154 10 C 0.310 3.690 11 O -0.474 6.474 12 N -0.350 5.350 13 C -0.022 4.022 14 C -0.146 4.146 15 C -0.073 4.073 16 C -0.149 4.149 17 C 0.059 3.941 18 N -0.355 5.355 19 C -0.369 4.369 20 H 0.099 0.901 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.802 3.198 24 H -0.219 1.219 25 H -0.220 1.220 26 H -0.190 1.190 27 C 0.020 3.980 28 C 0.016 3.984 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.330 27.266 -2.545 27.725 hybrid contribution -0.499 -2.451 -0.609 2.574 sum 3.832 24.816 -3.154 25.307 Atomic orbital electron populations 1.20299 0.84564 1.04629 1.04144 1.23928 1.00035 0.88449 1.01602 1.73838 0.89866 1.25030 1.22220 1.84767 1.21390 1.23572 1.68267 1.24898 0.99441 0.83131 1.00931 1.20580 0.88693 0.98797 1.05389 1.20956 0.91825 0.97149 1.11305 1.19472 1.03029 0.87183 0.95926 1.21589 1.05503 0.89241 0.99084 1.21078 0.76179 0.90123 0.81580 1.90712 1.53770 1.70782 1.32114 1.48873 1.67776 1.11028 1.07360 1.22753 1.01313 0.98713 0.79375 1.22675 1.01432 0.90599 0.99938 1.21422 0.96338 0.96368 0.93219 1.22583 0.96628 0.94246 1.01488 1.20980 0.83688 0.92550 0.96916 1.44908 1.03311 1.02739 1.84560 1.19440 0.90789 0.86347 1.40302 0.90114 1.25637 0.96795 1.00888 1.02683 1.70195 1.07915 1.25672 1.56071 0.85133 0.78201 0.78979 0.77524 1.21883 1.22042 1.19044 1.21532 0.94382 0.83760 0.98292 1.21366 0.98637 0.82203 0.96195 0.89581 0.88695 0.90043 0.88456 0.87538 0.88280 0.90720 0.90189 0.86371 0.86671 0.89306 0.87174 0.89473 0.87152 0.90894 0.89285 0.97918 0.97685 0.94517 0.94218 0.94652 0.93792 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.39 71.24 0.74 -0.28 16 2 C 0.02 0.34 7.33 43.58 0.32 0.66 16 3 N -0.40 -8.80 12.07 -49.57 -0.60 -9.40 16 4 O 0.08 1.60 11.20 71.68 0.80 2.40 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.12 16 6 C -0.08 -0.57 10.23 71.24 0.73 0.16 16 7 C -0.21 -3.38 5.58 -19.73 -0.11 -3.49 16 8 C -0.02 -0.29 4.83 29.85 0.14 -0.15 16 9 C -0.11 -1.64 4.69 29.85 0.14 -1.50 16 10 C 0.52 12.95 7.85 87.66 0.69 13.64 16 11 O -0.59 -20.87 16.31 -3.03 -0.05 -20.92 16 12 N -0.62 -14.99 3.34 -812.51 -2.72 -17.71 16 13 C 0.10 1.47 6.67 87.01 0.58 2.05 16 14 C -0.11 -1.96 6.07 31.60 0.19 -1.76 16 15 C -0.07 -2.15 0.61 -51.90 -0.03 -2.18 16 16 C -0.11 -3.68 5.79 31.31 0.18 -3.50 16 17 C 0.18 8.95 5.37 86.81 0.47 9.41 16 18 N -0.63 -31.99 3.41 -693.53 -2.36 -34.35 16 19 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 20 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 21 C -0.07 -3.89 5.48 84.86 0.46 -3.42 16 22 N -0.95 -58.09 10.35 21.65 0.22 -57.86 16 23 Si 0.97 46.70 29.56 68.60 2.03 48.73 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.15 5.58 6.26 86.21 0.54 6.12 16 28 C 0.14 4.63 6.07 86.08 0.52 5.16 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.08 1.40 8.03 -2.39 -0.02 1.38 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.12 1.19 7.86 -2.39 -0.02 1.17 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 0.90 7.49 -2.38 -0.02 0.88 16 41 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 42 H 0.11 1.54 7.76 -2.39 -0.02 1.52 16 43 H 0.07 2.24 7.94 -2.39 -0.02 2.22 16 44 H 0.09 2.49 7.80 -2.39 -0.02 2.47 16 45 H 0.00 0.14 7.30 -2.39 -0.02 0.13 16 46 H 0.00 0.27 7.60 -2.38 -0.02 0.25 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.04 1.43 8.05 -2.39 -0.02 1.41 16 49 H 0.04 1.38 7.66 -2.39 -0.02 1.36 16 50 H 0.04 1.67 7.58 -2.38 -0.02 1.65 16 51 H 0.04 1.46 7.79 -2.39 -0.02 1.44 16 Total: -1.00 -80.29 408.87 4.85 -75.44 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 0.91 Total: 5.58 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.62 Total: 8.08 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -5.45 Total: -119.32 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.75 Total: -18.51 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -80.29 4.85 -75.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041824637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.400 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds