Wall clock time and date at job start Wed Apr 1 2020 04:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30184 * 126.79900 * 2 1 4 4 O 1.20920 * 111.60051 * 180.25567 * 3 2 1 5 5 C 1.34042 * 111.57002 * 359.74404 * 4 3 2 6 6 C 1.50703 * 126.77500 * 180.02562 * 5 4 3 7 7 C 1.35452 * 106.44640 * 0.02562 * 5 4 3 8 8 C 1.50688 * 128.00503 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47438 * 90.00498 * 8 7 5 10 10 C 1.50697 * 109.47439 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99972 * 180.02562 * 10 9 8 13 13 C 1.47618 * 126.91887 * 0.02562 * 12 10 9 14 14 C 1.54343 * 107.05172 * 204.98444 * 13 12 10 15 15 C 1.53093 * 104.72930 * 357.71199 * 14 13 12 16 16 C 1.53640 * 111.77973 * 218.76906 * 15 14 13 17 17 C 1.55195 * 101.41408 * 272.09087 * 16 15 14 18 18 N 1.47566 * 105.00085 * 324.51011 * 17 16 15 19 19 C 1.36938 * 125.66949 * 203.83397 * 18 17 16 20 20 H 1.07998 * 119.99909 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00222 * 0.03273 * 19 18 17 22 22 N 1.31621 * 119.99506 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47134 * 89.99743 * 23 21 19 25 25 H 1.48499 * 109.46882 * 210.00116 * 23 21 19 26 26 H 1.48498 * 109.46975 * 329.99915 * 23 21 19 27 27 C 1.47405 * 108.65549 * 23.86300 * 18 17 16 28 28 C 1.48409 * 126.91988 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47358 * 270.15935 * 1 2 3 30 30 H 1.09000 * 109.47756 * 30.16425 * 1 2 3 31 31 H 1.09001 * 109.46727 * 150.16308 * 1 2 3 32 32 H 1.08996 * 109.46451 * 269.99980 * 6 5 4 33 33 H 1.08999 * 109.47484 * 29.99699 * 6 5 4 34 34 H 1.08996 * 109.47054 * 150.00183 * 6 5 4 35 35 H 1.09001 * 109.47435 * 330.00277 * 8 7 5 36 36 H 1.09005 * 109.47469 * 210.00322 * 8 7 5 37 37 H 1.09001 * 109.46988 * 59.99505 * 9 8 7 38 38 H 1.09005 * 109.46822 * 299.99801 * 9 8 7 39 39 H 1.09002 * 109.91435 * 85.62905 * 13 12 10 40 40 H 1.09001 * 109.91854 * 324.33731 * 13 12 10 41 41 H 1.09002 * 110.40541 * 116.55967 * 14 13 12 42 42 H 1.08998 * 110.40672 * 238.86652 * 14 13 12 43 43 H 1.09001 * 111.03286 * 30.11429 * 16 15 14 44 44 H 1.08997 * 111.03929 * 154.05271 * 16 15 14 45 45 H 1.08999 * 110.32886 * 205.63343 * 17 16 15 46 46 H 1.08996 * 110.42474 * 83.43608 * 17 16 15 47 47 H 0.97000 * 119.99151 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.98284 * 238.53908 * 27 18 17 49 49 H 1.08995 * 110.02197 * 117.24788 * 27 18 17 50 50 H 1.09000 * 110.68222 * 260.85401 * 28 12 10 51 51 H 1.08997 * 110.67922 * 24.02597 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6024 -0.6067 -0.0035 6 6 4.9022 -1.3694 -0.0079 7 6 2.3539 -1.1320 0.0027 8 6 1.9592 -2.5863 0.0061 9 6 1.8319 -3.0768 1.4498 10 6 1.4377 -4.5313 1.4533 11 8 1.2742 -5.1178 0.4044 12 7 1.2659 -5.1801 2.6220 13 6 1.4220 -4.6196 3.9787 14 6 1.7520 -5.7975 4.9199 15 6 1.7109 -7.0366 4.0218 16 6 1.0799 -8.2399 4.7391 17 6 2.3170 -8.8644 5.4378 18 7 3.4336 -8.6554 4.4959 19 6 4.5814 -9.4001 4.4404 20 1 5.3426 -9.1653 3.7112 21 6 4.7664 -10.4569 5.3212 22 7 3.8388 -10.7428 6.2102 23 14 6.3319 -11.4733 5.2449 24 1 7.3552 -10.8741 6.1389 25 1 6.0425 -12.8618 5.6846 26 1 6.8425 -11.4919 3.8506 27 6 3.1082 -7.5112 3.6254 28 6 0.8808 -6.6018 2.8043 29 1 -0.3634 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5113 32 1 5.2110 -1.5548 -1.0366 33 1 5.6682 -0.7849 0.5016 34 1 4.7674 -2.3200 0.5080 35 1 2.7206 -3.1707 -0.5104 36 1 1.0028 -2.7044 -0.5033 37 1 1.0705 -2.4924 1.9663 38 1 2.7883 -2.9587 1.9593 39 1 0.4935 -4.1424 4.2923 40 1 2.2368 -3.8957 3.9900 41 1 2.7455 -5.6730 5.3506 42 1 1.0037 -5.8749 5.7087 43 1 0.3399 -7.9153 5.4706 44 1 0.6415 -8.9360 4.0239 45 1 2.1587 -9.9294 5.6072 46 1 2.5174 -8.3570 6.3814 47 1 3.9683 -11.4810 6.8259 48 1 3.1131 -7.8243 2.5813 49 1 3.8310 -6.7095 3.7771 50 1 -0.1850 -6.6877 3.0160 51 1 1.1485 -7.1887 1.9257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041824638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:30 Heat of formation + Delta-G solvation = 43.784549 kcal Electronic energy + Delta-G solvation = -30876.598469 eV Core-core repulsion = 26779.650329 eV Total energy + Delta-G solvation = -4096.948140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.17685 -40.31036 -38.56953 -36.15300 -35.66584 -34.06742 -32.80306 -31.97999 -30.43249 -29.33331 -28.98748 -28.55516 -27.91528 -26.11392 -25.00162 -23.47207 -22.64893 -21.54523 -20.40230 -20.31597 -19.25562 -18.67795 -17.89390 -17.39716 -16.95842 -16.66236 -16.09197 -15.44237 -15.13591 -14.75217 -14.43043 -14.25136 -14.15002 -13.81144 -13.76590 -13.53876 -13.39749 -13.15291 -13.03941 -12.91564 -12.77499 -12.61410 -12.53121 -12.29207 -12.07705 -11.83345 -11.56771 -11.52827 -11.32123 -11.19618 -11.04612 -10.88216 -10.81732 -10.23712 -10.14751 -10.07842 -9.98042 -9.88330 -9.77530 -9.52999 -9.34109 -8.69555 -8.59692 -6.84642 -5.67034 -3.08040 1.18059 1.90011 2.62186 2.81906 2.99440 3.38764 3.44097 3.45955 3.89227 4.15973 4.33173 4.46748 4.51232 4.69807 4.72439 4.77984 4.88317 4.95254 5.01246 5.06490 5.09618 5.15655 5.21579 5.24349 5.26156 5.38177 5.40909 5.46103 5.47118 5.54833 5.62336 5.71223 5.74187 5.78087 5.81251 5.92411 5.93750 5.98197 6.04794 6.19884 6.33391 6.35351 6.52929 6.60783 6.75054 6.84228 7.48539 7.57008 7.61131 7.83683 8.02001 8.14713 8.34174 9.20769 9.81318 10.46514 11.37093 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002222 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.880960 B =12596.256524 C =13594.046868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.027 4.027 6 C -0.077 4.077 7 C -0.200 4.200 8 C -0.025 4.025 9 C -0.130 4.130 10 C 0.531 3.469 11 O -0.544 6.544 12 N -0.619 5.619 13 C 0.102 3.898 14 C -0.116 4.116 15 C -0.082 4.082 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.604 5.604 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.155 3.845 28 C 0.120 3.880 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.012 0.988 47 H 0.252 0.748 48 H 0.024 0.976 49 H 0.020 0.980 50 H 0.070 0.930 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 19.983 -8.131 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.203 4.203 8 C -0.063 4.063 9 C -0.170 4.170 10 C 0.320 3.680 11 O -0.422 6.422 12 N -0.353 5.353 13 C -0.021 4.021 14 C -0.154 4.154 15 C -0.084 4.084 16 C -0.170 4.170 17 C 0.030 3.970 18 N -0.331 5.331 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.029 3.971 28 C -0.002 4.002 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.030 0.970 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.038 0.962 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.768 20.873 -8.683 23.598 hybrid contribution 0.772 -1.137 0.204 1.390 sum -5.996 19.735 -8.478 22.300 Atomic orbital electron populations 1.20182 0.86003 1.03831 1.03441 1.23469 0.98921 0.88519 1.02660 1.73848 0.89320 1.23986 1.20412 1.84797 1.21613 1.22611 1.67910 1.24329 0.98344 0.83703 1.02629 1.20393 0.89957 0.98759 1.04336 1.20972 0.91592 0.97510 1.10270 1.19603 1.03686 0.87365 0.95633 1.21607 1.03817 0.92806 0.98810 1.20177 0.76957 0.88643 0.82224 1.90713 1.51951 1.68977 1.30574 1.48963 1.68101 1.12722 1.05492 1.22242 1.00877 0.97116 0.81899 1.22371 1.03210 0.92762 0.97030 1.21623 0.97200 0.95263 0.94282 1.22874 0.99406 0.95691 0.99073 1.21959 0.82829 1.02321 0.89898 1.44642 1.18613 1.32475 1.37330 1.19072 0.93907 1.07703 1.14239 0.90603 1.24776 0.98572 0.99168 0.98183 1.69799 1.33116 1.31631 1.22616 0.86082 0.82397 0.79562 0.77533 1.21669 1.21644 1.20709 1.21068 0.91399 0.90419 0.94201 1.22425 0.98265 0.80799 0.98690 0.90126 0.90579 0.89866 0.89232 0.89683 0.88793 0.89557 0.89649 0.88969 0.88847 0.91621 0.91049 0.90058 0.90427 0.91979 0.91835 0.87744 0.96962 0.93762 0.95851 0.96227 0.91136 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.39 36.00 0.37 -0.18 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 N -0.37 -4.33 12.07 33.42 0.40 -3.93 16 4 O 0.10 1.03 11.20 17.17 0.19 1.22 16 5 C -0.03 -0.24 7.49 -35.30 -0.26 -0.50 16 6 C -0.08 -0.45 10.25 36.01 0.37 -0.08 16 7 C -0.20 -1.87 5.57 -104.43 -0.58 -2.45 16 8 C -0.02 -0.23 4.76 -27.89 -0.13 -0.36 16 9 C -0.13 -1.19 4.76 -27.88 -0.13 -1.32 16 10 C 0.53 6.89 7.89 -10.99 -0.09 6.81 16 11 O -0.54 -9.01 16.21 5.56 0.09 -8.92 16 12 N -0.62 -7.94 3.31 -170.01 -0.56 -8.50 16 13 C 0.10 1.06 6.77 -2.73 -0.02 1.04 16 14 C -0.12 -1.51 6.04 -25.98 -0.16 -1.66 16 15 C -0.08 -1.32 0.68 -153.89 -0.11 -1.42 16 16 C -0.13 -2.30 6.05 -25.24 -0.15 -2.45 16 17 C 0.15 3.59 5.84 -2.30 -0.01 3.58 16 18 N -0.60 -15.13 3.41 -170.41 -0.58 -15.71 16 19 C -0.22 -6.10 10.28 -15.06 -0.15 -6.25 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -26.48 10.10 55.49 0.56 -25.92 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.17 6.46 -3.65 -0.02 3.14 16 28 C 0.12 1.74 6.04 -2.65 -0.02 1.72 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.51 7.65 -51.93 -0.40 0.12 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 36 H 0.08 0.81 7.61 -51.93 -0.40 0.41 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.76 7.91 -51.93 -0.41 0.35 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.64 7.55 -51.93 -0.39 0.25 16 41 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 42 H 0.08 0.91 7.56 -51.93 -0.39 0.52 16 43 H 0.06 0.93 7.63 -51.93 -0.40 0.54 16 44 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 45 H 0.10 2.77 5.89 -51.93 -0.31 2.47 16 46 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 49 H 0.02 0.41 7.60 -51.93 -0.39 0.01 16 50 H 0.07 0.91 8.07 -51.93 -0.42 0.50 16 51 H 0.08 1.40 7.40 -51.93 -0.38 1.01 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -33.23 406.60 -9.02 -42.25 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.44 Total: -2.31 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.79 Total: -1.18 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.18 Total: -54.07 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.28 Total: -7.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.23 -9.02 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041824638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.034 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds